>FLGH_BUCBP (Q89AH6) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 244

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 62  LLHMYILRNFVSERKNIATNKKQKRSKC-SLPILALSTETN 181
           L+  +IL N  S  KNI  NKKQK+ K  +LPI   S ET+
Sbjct: 15  LILFFILLNGCSIDKNIILNKKQKQHKIFNLPITHTSKETH 55

>SECY_BUCBP (Q89A85) Preprotein translocase secY subunit|
          Length = 441

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -2

Query: 192 VPLTFVS-VDKASIGKLHLLRFCFLLVAIFFLS 97
           +P +F++ V+K   G LH+L FCF+ + IF ++
Sbjct: 200 LPSSFLNTVEKVRQGSLHVLLFCFIGIVIFLVT 232

>MCM5_YEAST (P29496) Minichromosome maintenance protein 5 (Cell division|
           control protein 46)
          Length = 775

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 86  NFVSERKNIATNKKQKRSKCSLPILALSTETNVRGTRNLLAKTAAP 223
           NFV+ RK +  N+ +   + S+PI     E  +R T +L     +P
Sbjct: 625 NFVTIRKQLLINELESTERSSIPITIRQLEAIIRITESLAKLELSP 670

>TTLL4_MOUSE (Q80UG8) Tubulin--tyrosine ligase-like protein 4|
          Length = 1193

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 77   ILRNFVSERKNIATNKKQKRSKCSLPILALSTETN 181
            I R  +S R N  T+K+ KRS   LP+L  S +++
Sbjct: 1138 ISRKTLSSRSNENTSKQSKRSTPGLPVLKYSGQSS 1172

>SURF1_HUMAN (Q15526) Surfeit locus protein 1|
          Length = 300

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 240 FHCTELGAAVLAKRFRVPLTFVSVDKASIGKL 145
           FHCT+LG  +L  R  VP   V+ +    G++
Sbjct: 166 FHCTDLGVTILVNRGFVPRKKVNPETRQKGQI 197


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,994,334
Number of Sequences: 219361
Number of extensions: 577302
Number of successful extensions: 1372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)