ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550387.1| Oryza sativa (japonica cultivar-group), mRNA 56 6e-05
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
3dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
4dbj|AK063507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
5gb|AY027935.1| Haemophilus influenzae phage HP2, complete genome 46 0.055
6gb|U24159.1|BHU24159 Bacteriophage HP1 strain HP1c1, complete ge... 46 0.055
7gb|BT017084.1| Zea mays clone EL01N0360E11.c mRNA sequence 44 0.22
8gb|AY110368.1| Zea mays CL34920_1 mRNA sequence 44 0.22
9gb|AC122279.3| Mus musculus BAC clone RP23-237J8 from chromosome... 42 0.86
10gb|AE014179.1| Mus musculus piebald deletion region section 7 of... 42 0.86
11dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 42 0.86
12gb|AC146601.3| Mus musculus BAC clone RP23-315I4 from 14, comple... 42 0.86
13ref|NM_001031071.1| Gallus gallus G protein-coupled receptor 126... 40 3.4
14gb|AC027644.9| Homo sapiens BAC clone RP11-792A8 from 7, complet... 40 3.4
15emb|Z93241.11|HS222E13 Human DNA sequence from clone RP1-222E13 ... 40 3.4
16emb|AL627303.17| Human DNA sequence from clone RP11-770B5 on chr... 40 3.4
17emb|AL592076.4| Human DNA sequence from clone RP11-306K13 on chr... 40 3.4
18gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, com... 40 3.4
19emb|AJ851754.1| Gallus gallus mRNA for hypothetical protein, clo... 40 3.4
20emb|CR352325.4| Mouse DNA sequence from clone RP23-333J5 on chro... 40 3.4
21emb|BX649484.12| Zebrafish DNA sequence from clone CH211-197H24 ... 40 3.4
22gb|AC174351.5| Medicago truncatula clone mth2-7h5, complete sequ... 40 3.4
23gb|AC145858.5| Pan troglodytes BAC clone RP43-6D19 from chromoso... 40 3.4
24ref|NG_002405.1| Homo sapiens RNA, U12 small nuclear pseudogene ... 40 3.4
25gb|AC009303.3| Homo sapiens BAC clone RP11-98C1 from 2, complete... 40 3.4
26emb|BX647805.1|HSM807951 Homo sapiens mRNA; cDNA DKFZp781K1743 (... 40 3.4
27gb|AC154661.2| Mus musculus BAC clone RP24-274N1 from 12, comple... 40 3.4
28emb|AL592404.7| Mouse DNA sequence from clone RP23-425D20 on chr... 40 3.4
29emb|CR974439.10| Mouse DNA sequence from clone RP23-298C24 on ch... 40 3.4
30gb|L43846.1|HUMUGB Homo sapiens small nuclear RNA (snRNA) gene 40 3.4
31emb|AL136158.25| Mouse DNA sequence from clone RP21-538M10 on ch... 40 3.4 
>ref|XM_550387.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3389

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 62   ttgctacatatgtacatcctcagaaactttgtttccgagagaaagaat 109
            ||||||| ||||||||  | |||||||||||||||||||| |||||||
Sbjct: 3306 ttgctacctatgtacaaacccagaaactttgtttccgagaaaaagaat 3259
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                               
Query: 62      ttgctacatatgtacatcctcagaaactttgtttccgagagaaagaat 109
               ||||||| ||||||||  | |||||||||||||||||||| |||||||
Sbjct: 4139548 ttgctacctatgtacaaacccagaaactttgtttccgagaaaaagaat 4139501
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>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0406H10
          Length = 156419

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 62    ttgctacatatgtacatcctcagaaactttgtttccgagagaaagaat 109
             ||||||| ||||||||  | |||||||||||||||||||| |||||||
Sbjct: 86519 ttgctacctatgtacaaacccagaaactttgtttccgagaaaaagaat 86472
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>dbj|AK063507.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F07, full
            insert sequence
          Length = 3389

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 62   ttgctacatatgtacatcctcagaaactttgtttccgagagaaagaat 109
            ||||||| ||||||||  | |||||||||||||||||||| |||||||
Sbjct: 3306 ttgctacctatgtacaaacccagaaactttgtttccgagaaaaagaat 3259
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>gb|AY027935.1| Haemophilus influenzae phage HP2, complete genome
          Length = 31508

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 149   ttgccaatacttgctttatctac 171
             |||||||||||||||||||||||
Sbjct: 17681 ttgccaatacttgctttatctac 17659
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>gb|U24159.1|BHU24159 Bacteriophage HP1 strain HP1c1, complete genome
          Length = 32355

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 149   ttgccaatacttgctttatctac 171
             |||||||||||||||||||||||
Sbjct: 18553 ttgccaatacttgctttatctac 18531
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>gb|BT017084.1| Zea mays clone EL01N0360E11.c mRNA sequence
          Length = 1083

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 80  ctcagaaactttgtttccgaga 101
           ||||||||||||||||||||||
Sbjct: 997 ctcagaaactttgtttccgaga 976
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>gb|AY110368.1| Zea mays CL34920_1 mRNA sequence
          Length = 820

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 80  ctcagaaactttgtttccgaga 101
           ||||||||||||||||||||||
Sbjct: 733 ctcagaaactttgtttccgaga 712
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>gb|AC122279.3| Mus musculus BAC clone RP23-237J8 from chromosome 14, complete sequence
          Length = 203640

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    tacagaaacaaatgttagggg 189
              |||||||||||||||||||||
Sbjct: 189288 tacagaaacaaatgttagggg 189268
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>gb|AE014179.1| Mus musculus piebald deletion region section 7 of 11 of the complete
              sequence
          Length = 400029

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 169    tacagaaacaaatgttagggg 189
              |||||||||||||||||||||
Sbjct: 354016 tacagaaacaaatgttagggg 354036
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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 67      acatatgtacatcctcagaaa 87
               |||||||||||||||||||||
Sbjct: 3152375 acatatgtacatcctcagaaa 3152395
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>gb|AC146601.3| Mus musculus BAC clone RP23-315I4 from 14, complete sequence
          Length = 172271

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 169   tacagaaacaaatgttagggg 189
             |||||||||||||||||||||
Sbjct: 74934 tacagaaacaaatgttagggg 74954
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>ref|NM_001031071.1| Gallus gallus G protein-coupled receptor 126 (GPR126), mRNA
          Length = 3984

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  ctgtgcaatgaaagaaaatg 247
            ||||||||||||||||||||
Sbjct: 3526 ctgtgcaatgaaagaaaatg 3545
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>gb|AC027644.9| Homo sapiens BAC clone RP11-792A8 from 7, complete sequence
          Length = 188207

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ctttatctacagaaacaaat 181
              ||||||||||||||||||||
Sbjct: 152407 ctttatctacagaaacaaat 152426
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>emb|Z93241.11|HS222E13 Human DNA sequence from clone RP1-222E13 on chromosome 22, complete
             sequence
          Length = 123360

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   ctaccaacaagaaacaaaaa 133
             ||||||||||||||||||||
Sbjct: 76856 ctaccaacaagaaacaaaaa 76837
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>emb|AL627303.17| Human DNA sequence from clone RP11-770B5 on chromosome 9 Contains
            part of the PBX3 gene for pre-B-cell leukemia
            transcription factor 3, complete sequence
          Length = 70193

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 154  aatacttgctttatctacagaaac 177
            |||||||||||||| |||||||||
Sbjct: 9440 aatacttgctttatatacagaaac 9417
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>emb|AL592076.4| Human DNA sequence from clone RP11-306K13 on chromosome 1 Contains a
             ribosomal protein L36 (RPL36) pseudogene, complete
             sequence
          Length = 100592

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    gagagaaagaatatagctac 117
             ||||||||||||||||||||
Sbjct: 55494 gagagaaagaatatagctac 55475
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>gb|AC154394.6| Mus musculus chromosome 18, clone RP23-315M1, complete sequence
          Length = 246033

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 111    tagctaccaacaagaaacaaaaac 134
              |||||||||| |||||||||||||
Sbjct: 106966 tagctaccaaaaagaaacaaaaac 106989
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>emb|AJ851754.1| Gallus gallus mRNA for hypothetical protein, clone 27d12
          Length = 3984

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 228  ctgtgcaatgaaagaaaatg 247
            ||||||||||||||||||||
Sbjct: 3526 ctgtgcaatgaaagaaaatg 3545
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>emb|CR352325.4| Mouse DNA sequence from clone RP23-333J5 on chromosome 4 Contains the
             5' end of the Mpdz gene for multiple PDZ domain protein,
             complete sequence
          Length = 113675

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   tgtgcaatgaaagaaaatgg 248
             ||||||||||||||||||||
Sbjct: 38206 tgtgcaatgaaagaaaatgg 38225
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>emb|BX649484.12| Zebrafish DNA sequence from clone CH211-197H24 in linkage group 16,
             complete sequence
          Length = 196058

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 19    tacgggtgtaaatttacatctgac 42
             ||||||||||||| ||||||||||
Sbjct: 25128 tacgggtgtaaatgtacatctgac 25105
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>gb|AC174351.5| Medicago truncatula clone mth2-7h5, complete sequence
          Length = 109873

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gggaaacgctgtcctttgta 20
             ||||||||||||||||||||
Sbjct: 60179 gggaaacgctgtcctttgta 60160
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>gb|AC145858.5| Pan troglodytes BAC clone RP43-6D19 from chromosome 7, complete sequence
          Length = 196528

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ctttatctacagaaacaaat 181
              ||||||||||||||||||||
Sbjct: 164644 ctttatctacagaaacaaat 164663
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>ref|NG_002405.1| Homo sapiens RNA, U12 small nuclear pseudogene (RNU12P) on
           chromosome 22
          Length = 731

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 ctaccaacaagaaacaaaaa 133
           ||||||||||||||||||||
Sbjct: 546 ctaccaacaagaaacaaaaa 527
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>gb|AC009303.3| Homo sapiens BAC clone RP11-98C1 from 2, complete sequence
          Length = 198652

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    caatgaaagaaaatgggaaa 252
              ||||||||||||||||||||
Sbjct: 180380 caatgaaagaaaatgggaaa 180399
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>emb|BX647805.1|HSM807951 Homo sapiens mRNA; cDNA DKFZp781K1743 (from clone DKFZp781K1743)
          Length = 3169

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  caatgaaagaaaatgggaaa 252
            ||||||||||||||||||||
Sbjct: 2847 caatgaaagaaaatgggaaa 2866
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>gb|AC154661.2| Mus musculus BAC clone RP24-274N1 from 12, complete sequence
          Length = 159667

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   aaaacagcagcccctagctc 228
             ||||||||||||||||||||
Sbjct: 72247 aaaacagcagcccctagctc 72266
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>emb|AL592404.7| Mouse DNA sequence from clone RP23-425D20 on chromosome 4, complete
             sequence
          Length = 110309

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   tgtgcaatgaaagaaaatgg 248
             ||||||||||||||||||||
Sbjct: 34841 tgtgcaatgaaagaaaatgg 34860
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>emb|CR974439.10| Mouse DNA sequence from clone RP23-298C24 on chromosome 17, complete
             sequence
          Length = 235536

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   tctgtgcaatgaaagaaaat 246
             ||||||||||||||||||||
Sbjct: 79010 tctgtgcaatgaaagaaaat 78991
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>gb|L43846.1|HUMUGB Homo sapiens small nuclear RNA (snRNA) gene
          Length = 731

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 114 ctaccaacaagaaacaaaaa 133
           ||||||||||||||||||||
Sbjct: 546 ctaccaacaagaaacaaaaa 527
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>emb|AL136158.25| Mouse DNA sequence from clone RP21-538M10 on chromosome 17, complete
              sequence
          Length = 190737

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    tctgtgcaatgaaagaaaat 246
              ||||||||||||||||||||
Sbjct: 127523 tctgtgcaatgaaagaaaat 127542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,126,595
Number of Sequences: 3902068
Number of extensions: 3126595
Number of successful extensions: 62227
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62154
Number of HSP's gapped (non-prelim): 73
length of query: 262
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 240
effective length of database: 17,147,199,772
effective search space: 4115327945280
effective search space used: 4115327945280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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