>gb|AY104623.1| Zea mays PCO143240 mRNA sequence
          Length = 1360

 Score =  103 bits (52), Expect = 7e-19
 Identities = 64/68 (94%)
 Strand = Plus / Minus

                                                                       
Query: 400 gccgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggc 459
           |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 989 gccgccttgtccagaaaccataccagcttcccgtccgttggctggaccattctagcaggc 930

                   
Query: 460 agggatgt 467
           || |||||
Sbjct: 929 agcgatgt 922

>ref|XM_479082.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1350

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 405 cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 464
           |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 981 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 922

             
Query: 465 tg 466
           ||
Sbjct: 921 tg 920

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 405      cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 464
                |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 24688095 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 24688036

                  
Query: 465      tg 466
                ||
Sbjct: 24688035 tg 24688034

>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0040H10
          Length = 132919

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                         
Query: 405   cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 464
             |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 44032 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 43973

               
Query: 465   tg 466
             ||
Sbjct: 43972 tg 43971

>dbj|AK070405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052F08, full
           insert sequence
          Length = 1350

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 405 cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 464
           |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 981 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 922

             
Query: 465 tg 466
           ||
Sbjct: 921 tg 920

>dbj|AK059691.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B03, full
           insert sequence
          Length = 950

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 405 cttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcaggcaggga 464
           |||||||| ||||||||||||||| ||||| |||||||| ||||| || || ||||| ||
Sbjct: 577 cttgtccaaaaaccacaccagcttgccgtctgttggctgaaccattcttgctggcagcga 518

             
Query: 465 tg 466
           ||
Sbjct: 517 tg 516

>ref|XM_506916.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0059G13.23
            mRNA
          Length = 2926

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 402  cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 458
            ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 2692 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 2636

>ref|XM_468698.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1349

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 402  cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 458
            ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 1012 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 956

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 402      cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 458
                ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 17100672 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 17100728

>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete
              sequence
          Length = 157662

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 402    cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 458
              ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 131418 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 131474

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                         
Query: 402      cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 458
                ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 17094241 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 17094297

>dbj|AK103024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117B06, full
            insert sequence
          Length = 1349

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 402  cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 458
            ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 1012 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 956

>dbj|AK073878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072G18, full
            insert sequence
          Length = 2924

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 402  cgccttgtccagaaaccacaccagcttcccgtccgttggctggaccatcctggcagg 458
            ||||||||||| |||||| |||| ||| |||||||||||||| ||||| || |||||
Sbjct: 2690 cgccttgtccaaaaaccaaaccaacttaccgtccgttggctgaaccattcttgcagg 2634

>gb|AY178865.1| Rattus norvegicus retinol dehydrogenase 10 mRNA, complete cds
          Length = 1061

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 tgtccagaaaccacaccagc 426
           ||||||||||||||||||||
Sbjct: 469 tgtccagaaaccacaccagc 450

>gb|AC166289.4| Mus musculus chromosome 7, clone RP24-132A16, complete sequence
          Length = 172931

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    gagagctaaccttcttccag 271
              ||||||||||||||||||||
Sbjct: 134268 gagagctaaccttcttccag 134287

>ref|NM_189245.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 591

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 tgctgctgctcgtaggcgtcgtcc 375
           ||||||||||||||| ||||||||
Sbjct: 71  tgctgctgctcgtagtcgtcgtcc 48

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 372     gtccgacagcgcctcgagcg 391
               ||||||||||||||||||||
Sbjct: 2357197 gtccgacagcgcctcgagcg 2357178

>gb|BC019796.1| Mus musculus retinol dehydrogenase 10 (all-trans), mRNA (cDNA clone
           MGC:30527 IMAGE:4923005), complete cds
          Length = 2310

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 tgtccagaaaccacaccagc 426
           ||||||||||||||||||||
Sbjct: 591 tgtccagaaaccacaccagc 572

>gb|AC101762.7| Mus musculus chromosome 7, clone RP24-315G8, complete sequence
          Length = 185445

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    gagagctaaccttcttccag 271
              ||||||||||||||||||||
Sbjct: 139488 gagagctaaccttcttccag 139507

>gb|BC038334.1| Mus musculus retinol dehydrogenase 10 (all-trans), mRNA (cDNA clone
           IMAGE:1395365)
          Length = 1400

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 407 tgtccagaaaccacaccagc 426
           ||||||||||||||||||||
Sbjct: 711 tgtccagaaaccacaccagc 730

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 368     cgtcgtccgacagcgcctcg 387
               ||||||||||||||||||||
Sbjct: 3594603 cgtcgtccgacagcgcctcg 3594584

>emb|AL451047.7| Human DNA sequence from clone RP11-1B20 on chromosome 1 Contains part
             of the CDC42BPA gene for CDC42 binding protein kinase
             alpha (DMPK-like), a novel gene and a CpG island, complete
             sequence
          Length = 77054

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    gaagagaatgggttcacagt 72
             ||||||||||||||||||||
Sbjct: 68394 gaagagaatgggttcacagt 68375

>emb|AL355344.20| Human DNA sequence from clone RP11-710A11 on chromosome 10 Contains
            the 3' end for a novel gene (KIAA1274), the PRF1 gene
            forperforin 1 (pore forming protein), the 5' end of the
            ADAMTS14 gene for a disintegrin-like and metalloprotease
            (reprolysin type) with thrombospondin type 1 motif 14,
            and one CpG island, complete sequence
          Length = 149490

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 444  gaccatcctggcaggcaggg 463
            ||||||||||||||||||||
Sbjct: 2826 gaccatcctggcaggcaggg 2807

>emb|AL353605.12| Human DNA sequence from clone RP11-364M22 on chromosome 9, complete
             sequence
          Length = 135153

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    aataatctaatcttagctag 46
             ||||||||||||||||||||
Sbjct: 44068 aataatctaatcttagctag 44049

>dbj|AK149656.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:G530008C05 product:retinol
           dehydrogenase 10 (all-trans), full insert sequence
          Length = 2363

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 tgtccagaaaccacaccagc 426
           ||||||||||||||||||||
Sbjct: 663 tgtccagaaaccacaccagc 644

>gb|BC052546.1| Mus musculus retinol dehydrogenase 10 (all-trans), mRNA (cDNA clone
           IMAGE:1429338)
          Length = 1413

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 407 tgtccagaaaccacaccagc 426
           ||||||||||||||||||||
Sbjct: 715 tgtccagaaaccacaccagc 734

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 352      tgctgctgctcgtaggcgtcgtcc 375
                ||||||||||||||| ||||||||
Sbjct: 16500469 tgctgctgctcgtagtcgtcgtcc 16500492

>gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, complete sequence
          Length = 185668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    gagagctaaccttcttccag 271
              ||||||||||||||||||||
Sbjct: 168206 gagagctaaccttcttccag 168187

>ref|NM_181478.2| Rattus norvegicus retinol dehydrogenase 10 (all-trans) (Rdh10),
           mRNA
          Length = 1061

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 tgtccagaaaccacaccagc 426
           ||||||||||||||||||||
Sbjct: 469 tgtccagaaaccacaccagc 450

>dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1460_H08
          Length = 113514

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 352   tgctgctgctcgtaggcgtcgtcc 375
             ||||||||||||||| ||||||||
Sbjct: 21139 tgctgctgctcgtagtcgtcgtcc 21162

>dbj|AK103881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149O18, full
           insert sequence
          Length = 900

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 352 tgctgctgctcgtaggcgtcgtcc 375
           ||||||||||||||| ||||||||
Sbjct: 172 tgctgctgctcgtagtcgtcgtcc 149

>emb|AL929455.8| Mouse DNA sequence from clone RP23-463J10 on chromosome 2, complete
             sequence
          Length = 84387

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   tctccactctgttctgagtt 340
             ||||||||||||||||||||
Sbjct: 26396 tctccactctgttctgagtt 26377

>ref|NM_133832.2| Mus musculus retinol dehydrogenase 10 (all-trans) (Rdh10), mRNA
          Length = 2310

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 tgtccagaaaccacaccagc 426
           ||||||||||||||||||||
Sbjct: 591 tgtccagaaaccacaccagc 572

>gb|AC162442.19| Mus musculus chromosome 1, clone RP24-178O17, complete sequence
          Length = 201383

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   tgtccagaaaccacaccagc 426
             ||||||||||||||||||||
Sbjct: 86407 tgtccagaaaccacaccagc 86388

>gb|AF456767.1| Mus musculus retinol dehydrogenase 10 mRNA, complete cds
          Length = 1364

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 407 tgtccagaaaccacaccagc 426
           ||||||||||||||||||||
Sbjct: 699 tgtccagaaaccacaccagc 680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,806,009
Number of Sequences: 3902068
Number of extensions: 3806009
Number of successful extensions: 57810
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57628
Number of HSP's gapped (non-prelim): 182
length of query: 618
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 595
effective length of database: 17,143,297,704
effective search space: 10200262133880
effective search space used: 10200262133880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)