ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE006156.1| Pasteurella multocida subsp. multocida str. Pm70 ... 38 8.1
2ref|XM_451435.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A09955g ... 38 8.1
3emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 38 8.1

>gb|AE006156.1| Pasteurella multocida subsp. multocida str. Pm70 section 123 of 204
            of the complete genome
          Length = 13495

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 134  tgattttcatgcgaataaa 152
            |||||||||||||||||||
Sbjct: 5071 tgattttcatgcgaataaa 5089



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>ref|XM_451435.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A09955g predicted mRNA
          Length = 1668

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 40  atgtcattgttgccgacga 58
           |||||||||||||||||||
Sbjct: 686 atgtcattgttgccgacga 704



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>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1062590

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     atgtcattgttgccgacga 58
              |||||||||||||||||||
Sbjct: 874670 atgtcattgttgccgacga 874652


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 711,714
Number of Sequences: 3902068
Number of extensions: 711714
Number of successful extensions: 32263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32257
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 144
effective length of database: 17,147,199,772
effective search space: 2469196767168
effective search space used: 2469196767168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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