ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26m21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YDFI_ECOLI (P77260) Hypothetical oxidoreductase ydfI (EC 1.-.-.-) 28 6.6

>YDFI_ECOLI (P77260) Hypothetical oxidoreductase ydfI (EC 1.-.-.-)|
          Length = 486

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 40  NITYPSQQVDMFVPQFGKSTPTKIKASEMTG-RFNRGILSSPLEE 171
           N+T+PS  VD  VP   + T  KI+  ++TG R   G+   P  +
Sbjct: 214 NVTFPSTMVDRIVPAVTEDTLAKIE--QLTGVRDPAGVACEPFRQ 256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,848,245
Number of Sequences: 219361
Number of extensions: 423931
Number of successful extensions: 1027
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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