ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26m17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1COX20_YEAST (Q04935) Cytochrome c oxidase protein 20, mitochondr... 29 9.3

>COX20_YEAST (Q04935) Cytochrome c oxidase protein 20, mitochondrial precursor|
          Length = 205

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 545 DSSIQVQPLGKVDGYRAVFRKEANVKTISKDEYPKFA 435
           D   Q QP GK DG R +       K + +D  PKFA
Sbjct: 12  DQKQQQQPQGKADGDRVLTNYSRGQKILLEDTPPKFA 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,802,164
Number of Sequences: 219361
Number of extensions: 1825764
Number of successful extensions: 3844
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3844
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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