ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26m17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
2dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic D... 196 6e-47
3dbj|AK070898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
4dbj|AK059642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 6e-47
5gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, comp... 48 0.034
6gb|AC119848.8| Mus musculus chromosome 7, clone RP23-73B20, comp... 46 0.13
7gb|AC120854.15| Mus musculus chromosome 7, clone RP23-329B6, com... 46 0.13
8emb|AL159169.14| Human DNA sequence from clone RP11-408A13 on ch... 44 0.53
9gb|AC147076.3| Pan troglodytes BAC clone RP43-172O18 from 7, com... 42 2.1
10gb|AC146376.4| Pan troglodytes BAC clone RP43-76K24 from 7, comp... 42 2.1
11gb|AC102652.9| Mus musculus chromosome 6, clone RP23-20L3, compl... 42 2.1
12gb|AC146221.3| Pan troglodytes BAC clone RP43-33B24 from 7, comp... 42 2.1
13gb|AC009333.12| Homo sapiens chromosome 7 clone RP11-356G1, comp... 42 2.1
14gb|AC018558.6| Homo sapiens chromosome 16 clone RP11-80F22, comp... 42 2.1
15gb|AC016778.3|AC016778 Homo sapiens BAC clone CTD-3055C21 from 7... 42 2.1
16gb|AC007652.1|AC007652 Homo sapiens clone RP11-23B6 from 7p14-15... 42 2.1
17gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.10... 42 2.1
18gb|AC102597.22| Mus musculus chromosome 18, clone RP23-361H2, co... 40 8.2
19gb|AC158499.5| Mus musculus chromosome 18, clone RP23-466O5, com... 40 8.2
20gb|AC108853.7| Mus musculus chromosome 8, clone RP24-87L12, comp... 40 8.2
21gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, co... 40 8.2
22gb|AC164399.4| Mus musculus chromosome 8, clone RP23-338K3, comp... 40 8.2
23gb|AC102449.7| Mus musculus chromosome 5, clone RP24-216G12, com... 40 8.2
24gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, comp... 40 8.2
25gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, comp... 40 8.2
26gb|AC127689.4| Mus musculus BAC clone RP24-206I5 from chromosome... 40 8.2
27ref|XM_808578.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.2
28gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome ... 40 8.2
29emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chro... 40 8.2
30gb|AC161939.4| Mus musculus 10 BAC RP24-364P6 (Roswell Park Canc... 40 8.2
31gb|AC108082.3| Homo sapiens chromosome 5 clone CTD-2011G17, comp... 40 8.2
32gb|AC157773.6| Mus musculus chromosome 8, clone RP24-161L20, com... 40 8.2
33gb|AC160408.6| Mus musculus 10 BAC RP23-116I16 (Roswell Park Can... 40 8.2
34gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31,... 40 8.2
35gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, ... 40 8.2
36emb|CT010440.18| Mouse DNA sequence from clone RP23-35N23 on chr... 40 8.2
37emb|AL133316.5|CNS01DUR Human chromosome 14 DNA sequence Partial... 40 8.2
38gb|AC091260.10| Mus musculus chromosome 9, clone RP23-208K9, com... 40 8.2
39gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, com... 40 8.2
40gb|AC124490.4| Mus musculus BAC clone RP23-453I1 from 16, comple... 40 8.2
41emb|AL132716.6|CNS01DTF Human chromosome 14 DNA sequence BAC R-1... 40 8.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  196 bits (99), Expect = 6e-47
 Identities = 236/283 (83%), Gaps = 9/283 (3%)
 Strand = Plus / Plus

                                                                            
Query: 333      ggtgaagagaaacacctctggcactgaataaggatcgagctcgacacagcctcgaagctt 392
                |||||| ||||||| ||||||||||||  ||||||||||||| | | | |||||||||||
Sbjct: 19687761 ggtgaaaagaaacatctctggcactgacaaaggatcgagctccaaaaaacctcgaagctt 19687820

                                                                            
Query: 393      gcctgctttctcatttgtcagatggaagcaagggacgtggtgagcgaactttgggtactc 452
                |||| || | ||||||||||||||||||||||| |  ||||||| |||||||||||||||
Sbjct: 19687821 gcctcctctttcatttgtcagatggaagcaaggaatctggtgagagaactttgggtactc 19687880

                                                                            
Query: 453      atccttgcttattgttttcacatttgcctcttttct---------aaatactgccctgta 503
                ||| || |||||||| ||||||  | ||||| ||||         |||||||||||| ||
Sbjct: 19687881 atctttccttattgtcttcacagctccctctcttctgtctggcataaatactgccctata 19687940

                                                                            
Query: 504      gccatccacctttcctaaaggctgaacttgtatggacgaatcagtctggccaacaatctc 563
                 ||||||||||||| |||| |||||||||||||||| |||||||| |||||||  |||||
Sbjct: 19687941 accatccacctttcttaaaagctgaacttgtatggatgaatcagtgtggccaaatatctc 19688000

                                                           
Query: 564      cacaaattcatactcacagtttttaaagtcttctgcagtccat 606
                ||| |||||||| ||||| || ||| | |||| ||| ||||||
Sbjct: 19688001 caccaattcatagtcacatttcttataatcttttgcggtccat 19688043
to top
>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0001B21
          Length = 143722

 Score =  196 bits (99), Expect = 6e-47
 Identities = 236/283 (83%), Gaps = 9/283 (3%)
 Strand = Plus / Plus

                                                                         
Query: 333   ggtgaagagaaacacctctggcactgaataaggatcgagctcgacacagcctcgaagctt 392
             |||||| ||||||| ||||||||||||  ||||||||||||| | | | |||||||||||
Sbjct: 72217 ggtgaaaagaaacatctctggcactgacaaaggatcgagctccaaaaaacctcgaagctt 72276

                                                                         
Query: 393   gcctgctttctcatttgtcagatggaagcaagggacgtggtgagcgaactttgggtactc 452
             |||| || | ||||||||||||||||||||||| |  ||||||| |||||||||||||||
Sbjct: 72277 gcctcctctttcatttgtcagatggaagcaaggaatctggtgagagaactttgggtactc 72336

                                                                         
Query: 453   atccttgcttattgttttcacatttgcctcttttct---------aaatactgccctgta 503
             ||| || |||||||| ||||||  | ||||| ||||         |||||||||||| ||
Sbjct: 72337 atctttccttattgtcttcacagctccctctcttctgtctggcataaatactgccctata 72396

                                                                         
Query: 504   gccatccacctttcctaaaggctgaacttgtatggacgaatcagtctggccaacaatctc 563
              ||||||||||||| |||| |||||||||||||||| |||||||| |||||||  |||||
Sbjct: 72397 accatccacctttcttaaaagctgaacttgtatggatgaatcagtgtggccaaatatctc 72456

                                                        
Query: 564   cacaaattcatactcacagtttttaaagtcttctgcagtccat 606
             ||| |||||||| ||||| || ||| | |||| ||| ||||||
Sbjct: 72457 caccaattcatagtcacatttcttataatcttttgcggtccat 72499
to top
>dbj|AK070898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023071K08, full
            insert sequence
          Length = 4268

 Score =  196 bits (99), Expect = 6e-47
 Identities = 236/283 (83%), Gaps = 9/283 (3%)
 Strand = Plus / Minus

                                                                        
Query: 333  ggtgaagagaaacacctctggcactgaataaggatcgagctcgacacagcctcgaagctt 392
            |||||| ||||||| ||||||||||||  ||||||||||||| | | | |||||||||||
Sbjct: 3789 ggtgaaaagaaacatctctggcactgacaaaggatcgagctccaaaaaacctcgaagctt 3730

                                                                        
Query: 393  gcctgctttctcatttgtcagatggaagcaagggacgtggtgagcgaactttgggtactc 452
            |||| || | ||||||||||||||||||||||| |  ||||||| |||||||||||||||
Sbjct: 3729 gcctcctctttcatttgtcagatggaagcaaggaatctggtgagagaactttgggtactc 3670

                                                                        
Query: 453  atccttgcttattgttttcacatttgcctcttttct---------aaatactgccctgta 503
            ||| || |||||||| ||||||  | ||||| ||||         |||||||||||| ||
Sbjct: 3669 atctttccttattgtcttcacagctccctctcttctgtctggcataaatactgccctata 3610

                                                                        
Query: 504  gccatccacctttcctaaaggctgaacttgtatggacgaatcagtctggccaacaatctc 563
             ||||||||||||| |||| |||||||||||||||| |||||||| |||||||  |||||
Sbjct: 3609 accatccacctttcttaaaagctgaacttgtatggatgaatcagtgtggccaaatatctc 3550

                                                       
Query: 564  cacaaattcatactcacagtttttaaagtcttctgcagtccat 606
            ||| |||||||| ||||| || ||| | |||| ||| ||||||
Sbjct: 3549 caccaattcatagtcacatttcttataatcttttgcggtccat 3507
to top
>dbj|AK059642.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-B09, full
            insert sequence
          Length = 1518

 Score =  196 bits (99), Expect = 6e-47
 Identities = 236/283 (83%), Gaps = 9/283 (3%)
 Strand = Plus / Minus

                                                                        
Query: 333  ggtgaagagaaacacctctggcactgaataaggatcgagctcgacacagcctcgaagctt 392
            |||||| ||||||| ||||||||||||  ||||||||||||| | | | |||||||||||
Sbjct: 1094 ggtgaaaagaaacatctctggcactgacaaaggatcgagctccaaaaaacctcgaagctt 1035

                                                                        
Query: 393  gcctgctttctcatttgtcagatggaagcaagggacgtggtgagcgaactttgggtactc 452
            |||| || | ||||||||||||||||||||||| |  ||||||| |||||||||||||||
Sbjct: 1034 gcctcctctttcatttgtcagatggaagcaaggaatctggtgagagaactttgggtactc 975

                                                                        
Query: 453  atccttgcttattgttttcacatttgcctcttttct---------aaatactgccctgta 503
            ||| || |||||||| ||||||  | ||||| ||||         |||||||||||| ||
Sbjct: 974  atctttccttattgtcttcacagctccctctcttctgtctggcataaatactgccctata 915

                                                                        
Query: 504  gccatccacctttcctaaaggctgaacttgtatggacgaatcagtctggccaacaatctc 563
             ||||||||||||| |||| |||||||||||||||| |||||||| |||||||  |||||
Sbjct: 914  accatccacctttcttaaaagctgaacttgtatggatgaatcagtgtggccaaatatctc 855

                                                       
Query: 564  cacaaattcatactcacagtttttaaagtcttctgcagtccat 606
            ||| |||||||| ||||| || ||| | |||| ||| ||||||
Sbjct: 854  caccaattcatagtcacatttcttataatcttttgcggtccat 812
to top
>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence
          Length = 170999

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 30    atttttgattacacaagcaggaaatgaa 57
             |||||| |||||||||||||||||||||
Sbjct: 44406 attttttattacacaagcaggaaatgaa 44379
to top
>gb|AC119848.8| Mus musculus chromosome 7, clone RP23-73B20, complete sequence
          Length = 239297

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 382    cctcgaagcttgcctgctttctc 404
              |||||||||||||||||||||||
Sbjct: 111086 cctcgaagcttgcctgctttctc 111108
to top
>gb|AC120854.15| Mus musculus chromosome 7, clone RP23-329B6, complete sequence
          Length = 205102

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 382  cctcgaagcttgcctgctttctc 404
            |||||||||||||||||||||||
Sbjct: 6454 cctcgaagcttgcctgctttctc 6432
to top
>emb|AL159169.14| Human DNA sequence from clone RP11-408A13 on chromosome 9 Contains a
             pseudogene similar to part of cell division cycle
             associated 4 (CDCA4) (HEPP, FLJ20764) and a pseudogene
             similar to part of nuclear factor I/A (NFIA), complete
             sequence
          Length = 86155

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 34    ttgattacacaagcaggaaatg 55
             ||||||||||||||||||||||
Sbjct: 23881 ttgattacacaagcaggaaatg 23902
to top
>gb|AC147076.3| Pan troglodytes BAC clone RP43-172O18 from 7, complete sequence
          Length = 175186

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 39   tacacaagcaggaaatgaagg 59
            |||||||||||||||||||||
Sbjct: 9315 tacacaagcaggaaatgaagg 9335
to top
>gb|AC146376.4| Pan troglodytes BAC clone RP43-76K24 from 7, complete sequence
          Length = 173021

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    tacacaagcaggaaatgaagg 59
             |||||||||||||||||||||
Sbjct: 26448 tacacaagcaggaaatgaagg 26428
to top
>gb|AC102652.9| Mus musculus chromosome 6, clone RP23-20L3, complete sequence
          Length = 229752

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 577   tcacagtttttaaagtcttct 597
             |||||||||||||||||||||
Sbjct: 67839 tcacagtttttaaagtcttct 67819
to top
>gb|AC146221.3| Pan troglodytes BAC clone RP43-33B24 from 7, complete sequence
          Length = 127675

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    tacacaagcaggaaatgaagg 59
             |||||||||||||||||||||
Sbjct: 26451 tacacaagcaggaaatgaagg 26431
to top
>gb|AC009333.12| Homo sapiens chromosome 7 clone RP11-356G1, complete sequence
          Length = 180019

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 39   tacacaagcaggaaatgaagg 59
            |||||||||||||||||||||
Sbjct: 9291 tacacaagcaggaaatgaagg 9311
to top
>gb|AC018558.6| Homo sapiens chromosome 16 clone RP11-80F22, complete sequence
          Length = 151051

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 473   catttgcctcttttctaaata 493
             |||||||||||||||||||||
Sbjct: 39042 catttgcctcttttctaaata 39022
to top
>gb|AC016778.3|AC016778 Homo sapiens BAC clone CTD-3055C21 from 7p15.1-p13, complete sequence
          Length = 140100

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    tacacaagcaggaaatgaagg 59
             |||||||||||||||||||||
Sbjct: 62714 tacacaagcaggaaatgaagg 62694
to top
>gb|AC007652.1|AC007652 Homo sapiens clone RP11-23B6 from 7p14-15, complete sequence
          Length = 195981

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    tacacaagcaggaaatgaagg 59
             |||||||||||||||||||||
Sbjct: 90314 tacacaagcaggaaatgaagg 90334
to top
>gb|AC005823.1|AC005823 Homo sapiens chromosome 17, clone hRPK.1018_N_14, complete sequence
          Length = 185116

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    attacacaagcaggaaatgaa 57
             |||||||||||||||||||||
Sbjct: 64812 attacacaagcaggaaatgaa 64792
to top
>gb|AC102597.22| Mus musculus chromosome 18, clone RP23-361H2, complete sequence
          Length = 204401

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 463   attgttttcacatttgcctctttt 486
             |||||||||| |||||||||||||
Sbjct: 13497 attgttttcaaatttgcctctttt 13474
to top
>gb|AC158499.5| Mus musculus chromosome 18, clone RP23-466O5, complete sequence
          Length = 164645

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 463   attgttttcacatttgcctctttt 486
             |||||||||| |||||||||||||
Sbjct: 90766 attgttttcaaatttgcctctttt 90743
to top
>gb|AC108853.7| Mus musculus chromosome 8, clone RP24-87L12, complete sequence
          Length = 171410

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 575   actcacagtttttaaagtct 594
             ||||||||||||||||||||
Sbjct: 53611 actcacagtttttaaagtct 53630
to top
>gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, complete sequence
          Length = 278715

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 281    caacttcagctcctaaagatgcac 304
              ||||||||||||||||||| ||||
Sbjct: 239146 caacttcagctcctaaagaagcac 239123
to top
>gb|AC164399.4| Mus musculus chromosome 8, clone RP23-338K3, complete sequence
          Length = 213363

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   actcacagtttttaaagtct 594
             ||||||||||||||||||||
Sbjct: 15520 actcacagtttttaaagtct 15501
to top
>gb|AC102449.7| Mus musculus chromosome 5, clone RP24-216G12, complete sequence
          Length = 172155

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 560    tctccacaaattcatactca 579
              ||||||||||||||||||||
Sbjct: 139204 tctccacaaattcatactca 139223
to top
>gb|AC146108.3| Pan troglodytes BAC clone RP43-22F10 from 7, complete sequence
          Length = 230349

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 509   ccacctttcctaaaggctga 528
             ||||||||||||||||||||
Sbjct: 61388 ccacctttcctaaaggctga 61369
to top
>gb|AC146056.2| Pan troglodytes BAC clone RP43-89N11 from 7, complete sequence
          Length = 154447

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 509    ccacctttcctaaaggctga 528
              ||||||||||||||||||||
Sbjct: 104666 ccacctttcctaaaggctga 104647
to top
>gb|AC127689.4| Mus musculus BAC clone RP24-206I5 from chromosome 5, complete sequence
          Length = 155413

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 560   tctccacaaattcatactca 579
             ||||||||||||||||||||
Sbjct: 70548 tctccacaaattcatactca 70529
to top
>ref|XM_808578.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506251.30) partial mRNA
          Length = 1590

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 279  cacaacttcagctcctaaagatgc 302
            |||||||||||||||| |||||||
Sbjct: 1103 cacaacttcagctcctcaagatgc 1080
to top
>gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome 14, complete sequence
          Length = 244524

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    ttcagctcctaaagatgcac 304
              ||||||||||||||||||||
Sbjct: 202335 ttcagctcctaaagatgcac 202354
to top
>emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chromosome 10 Contains part of
              the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G),
              complete sequence
          Length = 172177

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    tttctcatttgtcagatgga 418
              ||||||||||||||||||||
Sbjct: 132908 tttctcatttgtcagatgga 132889
to top
>gb|AC161939.4| Mus musculus 10 BAC RP24-364P6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162031

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   aaatactgccctgtagccat 508
             ||||||||||||||||||||
Sbjct: 82522 aaatactgccctgtagccat 82503
to top
>gb|AC108082.3| Homo sapiens chromosome 5 clone CTD-2011G17, complete sequence
          Length = 114475

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    tacacaagcaggaaatgaag 58
             ||||||||||||||||||||
Sbjct: 71091 tacacaagcaggaaatgaag 71110
to top
>gb|AC157773.6| Mus musculus chromosome 8, clone RP24-161L20, complete sequence
          Length = 179186

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 317   tatcccacatttaactggtgaaga 340
             ||||||||||||||||| ||||||
Sbjct: 44170 tatcccacatttaactgatgaaga 44147
to top
>gb|AC160408.6| Mus musculus 10 BAC RP23-116I16 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 210970

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   aaatactgccctgtagccat 508
             ||||||||||||||||||||
Sbjct: 71817 aaatactgccctgtagccat 71836
to top
>gb|AC009542.2|AC009542 Homo sapiens clone RP11-260N14 from 7q31, complete sequence
          Length = 160367

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 509    ccacctttcctaaaggctga 528
              ||||||||||||||||||||
Sbjct: 100625 ccacctttcctaaaggctga 100644
to top
>gb|AC009330.5|AC009330 Homo sapiens clone RP11-83M17 from 7q31, complete sequence
          Length = 174768

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 509   ccacctttcctaaaggctga 528
             ||||||||||||||||||||
Sbjct: 97808 ccacctttcctaaaggctga 97827
to top
>emb|CT010440.18| Mouse DNA sequence from clone RP23-35N23 on chromosome 9, complete
             sequence
          Length = 93990

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 482   cttttctaaatactgccctgtagc 505
             |||||||||| |||||||||||||
Sbjct: 31610 cttttctaaacactgccctgtagc 31587
to top
>emb|AL133316.5|CNS01DUR Human chromosome 14 DNA sequence Partial sequence from BAC C-2577N12 of
             library CalTech-D from chromosome 14 of Homo sapiens
             (Human), complete sequence
          Length = 158473

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atttttgattacacaagcag 49
             ||||||||||||||||||||
Sbjct: 21517 atttttgattacacaagcag 21498
to top
>gb|AC091260.10| Mus musculus chromosome 9, clone RP23-208K9, complete sequence
          Length = 188754

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 482    cttttctaaatactgccctgtagc 505
              |||||||||| |||||||||||||
Sbjct: 179504 cttttctaaacactgccctgtagc 179527
to top
>gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, complete sequence
          Length = 188634

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 317    tatcccacatttaactggtgaaga 340
              ||||||||||||||||| ||||||
Sbjct: 126767 tatcccacatttaactgatgaaga 126744
to top
>gb|AC124490.4| Mus musculus BAC clone RP23-453I1 from 16, complete sequence
          Length = 189215

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    agcaggaaatgaagggggga 64
             ||||||||||||||||||||
Sbjct: 27926 agcaggaaatgaagggggga 27907
to top
>emb|AL132716.6|CNS01DTF Human chromosome 14 DNA sequence BAC R-1124A8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155619

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atttttgattacacaagcag 49
             ||||||||||||||||||||
Sbjct: 34789 atttttgattacacaagcag 34770


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,295,336
Number of Sequences: 3902068
Number of extensions: 5295336
Number of successful extensions: 111087
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110950
Number of HSP's gapped (non-prelim): 137
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top