ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26m15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLZ12_LUPPO (P16148) Protein PPLZ12 153 5e-37
2YBBK_SHIFL (P0AA56) Hypothetical protein ybbK 40 0.006
3YBBK_ECOLI (P0AA53) Hypothetical protein ybbK 40 0.006
4YBBK_ECOL6 (P0AA54) Hypothetical protein ybbK 40 0.006
5YBBK_ECO57 (P0AA55) Hypothetical protein ybbK 40 0.006
6INT2_SALTI (P62592) Integrase/recombinase (E2 protein) 31 3.8
7INT2_PSEAE (P62591) Integrase/recombinase (E2 protein) 31 3.8
8INT2_ECOLI (P62590) Integrase/recombinase (E2 protein) 31 3.8
9DHSO_BACHD (Q9Z9U1) Sorbitol dehydrogenase (EC 1.1.1.14) (L-idit... 30 5.0
10RL4_BACHD (Q9Z9L3) 50S ribosomal protein L4 30 5.0
11APAH_BORPE (Q7W041) Bis(5'-nucleosyl)-tetraphosphatase, symmetri... 30 6.6
12APAH_BORPA (Q7W3V0) Bis(5'-nucleosyl)-tetraphosphatase, symmetri... 30 6.6
13APAH_BORBR (Q7WF80) Bis(5'-nucleosyl)-tetraphosphatase, symmetri... 30 6.6
14PUR5_PSEPK (Q88MA9) Phosphoribosylformylglycinamidine cyclo-liga... 30 6.6
15PO210_MOUSE (Q9QY81) Nuclear pore membrane glycoprotein 210 prec... 30 8.6
16TIP39_HUMAN (Q96A98) Tuberoinfundibular peptide of 39 residues p... 30 8.6
17TIP39_BOVIN (P0C171) Tuberoinfundibular peptide of 39 residues p... 30 8.6

>PLZ12_LUPPO (P16148) Protein PPLZ12|
          Length = 184

 Score =  153 bits (386), Expect = 5e-37
 Identities = 72/111 (64%), Positives = 93/111 (83%)
 Frame = -2

Query: 590 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 411
           K EAEKI+Q+KRAE EAEAKYL G+G+ARQRQAI DGLR+++L F+  V GT+AK+VMD+
Sbjct: 66  KGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDL 125

Query: 410 VLITQYFDTMKEIGASSKSSAVFIPHGPGAVRDIATQIRDGLLQGQSASDN 258
           ++ITQYFDT+K++G SSK++ VFIPHGPG VRDI  QIR+GL++   A  N
Sbjct: 126 IMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMESARAGIN 176



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>YBBK_SHIFL (P0AA56) Hypothetical protein ybbK|
          Length = 305

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
 Frame = -2

Query: 590 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 411
           KAE EK  QI +AEGE ++ +L     AR+R A  +     ++  A+      A   ++ 
Sbjct: 199 KAEGEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMVSEAIASGDIQA---VNY 253

Query: 410 VLITQYFDTMKEIGASSKSSAVFIPHGP----GAVRDIATQIRD 291
            +  +Y + +++IG+SS S  V +P       G++  IA  ++D
Sbjct: 254 FVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297



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>YBBK_ECOLI (P0AA53) Hypothetical protein ybbK|
          Length = 305

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
 Frame = -2

Query: 590 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 411
           KAE EK  QI +AEGE ++ +L     AR+R A  +     ++  A+      A   ++ 
Sbjct: 199 KAEGEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMVSEAIASGDIQA---VNY 253

Query: 410 VLITQYFDTMKEIGASSKSSAVFIPHGP----GAVRDIATQIRD 291
            +  +Y + +++IG+SS S  V +P       G++  IA  ++D
Sbjct: 254 FVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297



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>YBBK_ECOL6 (P0AA54) Hypothetical protein ybbK|
          Length = 305

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
 Frame = -2

Query: 590 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 411
           KAE EK  QI +AEGE ++ +L     AR+R A  +     ++  A+      A   ++ 
Sbjct: 199 KAEGEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMVSEAIASGDIQA---VNY 253

Query: 410 VLITQYFDTMKEIGASSKSSAVFIPHGP----GAVRDIATQIRD 291
            +  +Y + +++IG+SS S  V +P       G++  IA  ++D
Sbjct: 254 FVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297



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>YBBK_ECO57 (P0AA55) Hypothetical protein ybbK|
          Length = 305

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
 Frame = -2

Query: 590 KAEAEKIVQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDM 411
           KAE EK  QI +AEGE ++ +L     AR+R A  +     ++  A+      A   ++ 
Sbjct: 199 KAEGEKQSQILKAEGERQSAFLQ--AEARERSAEAEARATKMVSEAIASGDIQA---VNY 253

Query: 410 VLITQYFDTMKEIGASSKSSAVFIPHGP----GAVRDIATQIRD 291
            +  +Y + +++IG+SS S  V +P       G++  IA  ++D
Sbjct: 254 FVAQKYTEALQQIGSSSNSKVVMMPLEASSLMGSIAGIAELVKD 297



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>INT2_SALTI (P62592) Integrase/recombinase (E2 protein)|
          Length = 337

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
 Frame = -1

Query: 480 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 322
           PE   P LR Q     AW      +GR G      + R Y R         G   PW W 
Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232

Query: 321 SARHRH-TDPR 292
            A+H H TDPR
Sbjct: 233 FAQHTHSTDPR 243



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>INT2_PSEAE (P62591) Integrase/recombinase (E2 protein)|
          Length = 337

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
 Frame = -1

Query: 480 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 322
           PE   P LR Q     AW      +GR G      + R Y R         G   PW W 
Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232

Query: 321 SARHRH-TDPR 292
            A+H H TDPR
Sbjct: 233 FAQHTHSTDPR 243



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>INT2_ECOLI (P62590) Integrase/recombinase (E2 protein)|
          Length = 337

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
 Frame = -1

Query: 480 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 322
           PE   P LR Q     AW      +GR G      + R Y R         G   PW W 
Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232

Query: 321 SARHRH-TDPR 292
            A+H H TDPR
Sbjct: 233 FAQHTHSTDPR 243



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>DHSO_BACHD (Q9Z9U1) Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol|
           2-dehydrogenase) (Glucitol dehydrogenase)
          Length = 343

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 267 GRLALKKTVADLCGDVAHCARAMGD----EHRRGLGGRADLFHSIEVLGDQHHVHHV 425
           G     +T   +CG  ++C    GD     HR+GLG + D   +  V+  Q  +HH+
Sbjct: 79  GDRVTSETTYSICGKCSYCTS--GDYNLCSHRKGLGNQQDGSFAKYVIARQESLHHL 133



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>RL4_BACHD (Q9Z9L3) 50S ribosomal protein L4|
          Length = 207

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -2

Query: 596 NEKAEAEKIVQIKRAEGEAE-----AKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTT 432
           + K +AE+IV ++    EA      A  LSGL + R+   +     D+V   A N+PG T
Sbjct: 115 SSKVKAEEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADYNDNVALSARNIPGVT 174



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>APAH_BORPE (Q7W041) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC|
           3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A
           hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate
           pyrophosphohydrolase)
          Length = 277

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  TLISHCIPTGLMGFVTAHQPKAWHATIHIWFHI 110
           T I  C P+G M F T   P AW A +  WF +
Sbjct: 182 TRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDV 214



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>APAH_BORPA (Q7W3V0) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC|
           3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A
           hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate
           pyrophosphohydrolase)
          Length = 277

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  TLISHCIPTGLMGFVTAHQPKAWHATIHIWFHI 110
           T I  C P+G M F T   P AW A +  WF +
Sbjct: 182 TRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDV 214



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>APAH_BORBR (Q7WF80) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC|
           3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A
           hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate
           pyrophosphohydrolase)
          Length = 277

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  TLISHCIPTGLMGFVTAHQPKAWHATIHIWFHI 110
           T I  C P+G M F T   P AW A +  WF +
Sbjct: 182 TRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDV 214



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>PUR5_PSEPK (Q88MA9) Phosphoribosylformylglycinamidine cyclo-ligase (EC|
           6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole
           synthetase) (AIR synthase)
          Length = 352

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 402 DQHHVHHVLCSGARHIDCEAQDAVPQAIHNGLALAGD 512
           D+H +H VL  G   + C AQD V  A+ N L  AG+
Sbjct: 291 DEHEMHRVLNCGVGMVICVAQDQVEAAL-NELRAAGE 326



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>PO210_MOUSE (Q9QY81) Nuclear pore membrane glycoprotein 210 precursor (POM210)|
            (Nuclear pore protein gp210)
          Length = 1886

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 21/89 (23%), Positives = 40/89 (44%)
 Frame = +1

Query: 289  PSRICVAMSRTAPGPWGMNTAEDLEDAPISFIVSKYWVISTMSITSFAVVPGTLTAKPRT 468
            P  +   + R  PGP+G +      D   S+ V  +   + ++ T+  ++       PR 
Sbjct: 1780 PVTVAFVLDRRGPGPYGASLLSHFLD---SYQVMFFTFFALLAGTAVTIIAYHTVCAPRE 1836

Query: 469  LSLRPSTMAWRWRAIPRPDRYLASASPSA 555
            L+   S +A   RA P+   +  ++SP+A
Sbjct: 1837 LA---SPLALTPRASPQHSPHYLASSPAA 1862



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>TIP39_HUMAN (Q96A98) Tuberoinfundibular peptide of 39 residues precursor|
           (TIP39)
          Length = 100

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +1

Query: 469 LSLRPSTMAWRWRAIPRPDRYLASASPSA 555
           LSLRP   AW   A PRP R LA A  +A
Sbjct: 42  LSLRPPGRAWADPATPRPRRSLALADDAA 70



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>TIP39_BOVIN (P0C171) Tuberoinfundibular peptide of 39 residues precursor|
           (TIP39)
          Length = 100

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +1

Query: 469 LSLRPSTMAWRWRAIPRPDRYLASASPSA 555
           LSLRP   AW   A PRP R LA A  +A
Sbjct: 42  LSLRPPGRAWADPATPRPRRSLALADDAA 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,669,599
Number of Sequences: 219361
Number of extensions: 2023917
Number of successful extensions: 5476
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5467
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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