Clone Information

BLAST Search Result

Clone Name	rbasd26m13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RNF4_RAT (O88846) RING finger protein 4 (SNURF)	39	0.003
2	RNF4_MOUSE (Q9QZS2) RING finger protein 4	39	0.003
3	RNF4_HUMAN (P78317) RING finger protein 4	39	0.003
4	RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein li...	31	0.72
5	PEX10_PICAN (Q00940) Peroxisome assembly protein 10 (Peroxin-10)...	31	0.94
6	BRE1_CANAL (Q5A4X0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	30	1.2
7	AMFR2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform...	30	1.2
8	BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	30	1.6
9	BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	30	1.6
10	BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	30	1.6
11	YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in...	30	2.1
12	RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 ...	30	2.1
13	RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 ...	30	2.1
14	PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10)...	29	2.7
15	PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10)...	29	2.7
16	COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Co...	29	2.7
17	BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (...	29	2.7
18	BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	29	2.7
19	BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (...	29	2.7
20	AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2...	29	2.7
21	RAD18_CANGA (Q6FPI4) Postreplication repair ubiquitin-protein li...	29	3.6
22	BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	29	3.6
23	BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	29	3.6
24	BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-)...	29	3.6
25	BRE1_CANGA (Q6FWF3) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	29	3.6
26	RN125_MOUSE (Q9D9R0) RING finger protein 125 (EC 6.3.2.-)	29	3.6
27	RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2....	28	4.7
28	RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger p...	28	4.7
29	RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger...	28	4.7
30	RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger...	28	4.7
31	RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-)...	28	4.7
32	RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger...	28	4.7
33	RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-)...	28	4.7
34	ZP2_MOUSE (P20239) Zona pellucida sperm-binding protein 2 precur...	28	4.7
35	RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2....	28	4.7
36	RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein li...	28	4.7
37	RN141_CHICK (Q5ZM74) RING finger protein 141	28	4.7
38	RN125_MACFA (Q95KF1) RING finger protein 125 (EC 6.3.2.-)	28	6.1
39	RN125_HUMAN (Q96EQ8) RING finger protein 125 (EC 6.3.2.-) (T-cel...	28	6.1
40	BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) ...	28	6.1
41	RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (...	28	6.1
42	CM007_PONPY (Q5RD97) Protein C13orf7 homolog	28	6.1
43	CM007_HUMAN (Q5W0B1) Protein C13orf7	28	6.1
44	BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) ...	28	6.1
45	RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	28	6.1
46	RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	28	6.1
47	RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	28	6.1
48	RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-)...	28	6.1
49	PEX12_DROME (Q9VPT5) Putative peroxisome assembly protein 12 (Pe...	28	6.1
50	BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	28	6.1
51	BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	28	6.1
52	PEX10_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10)...	28	7.9
53	BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)	28	7.9

>RNF4_RAT (O88846) RING finger protein 4 (SNURF)|
          Length = 194

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVYL 157
           GH+FC + ++ S++    CPTCR+K+    +  +Y+
Sbjct: 159 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

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>RNF4_MOUSE (Q9QZS2) RING finger protein 4|
          Length = 194

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVYL 157
           GH+FC + ++ S++    CPTCR+K+    +  +Y+
Sbjct: 159 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

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>RNF4_HUMAN (P78317) RING finger protein 4|
          Length = 190

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVYL 157
           GH+FC + ++ S++    CPTCR+K+    +  +Y+
Sbjct: 155 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 190

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>RAD18_KLULA (Q6CTZ8) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 427

 Score = 31.2 bits (69), Expect = 0.72
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVYL 157
           GH FC   I+  +Q   KCP C   LT S   + +L
Sbjct: 48  GHSFCSICIRKYLQKESKCPLCLSDLTESMLQKEFL 83

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>PEX10_PICAN (Q00940) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome|
           biogenesis factor 10) (Peroxisome assembly protein PER8)
          Length = 295

 Score = 30.8 bits (68), Expect = 0.94
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKL 187
           GH+FC K +   ++  ++CP CR K+
Sbjct: 261 GHVFCWKCVLDWVKERQECPLCRAKM 286

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>BRE1_CANAL (Q5A4X0) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 681

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 273 TIXGHIFCXKXIKASIQX-XKKCPTCRRKLTISNFPRVYL 157
           T+ GH+FC K  +  +    ++CP+C R  + ++   ++L
Sbjct: 642 TVCGHVFCSKCTQERLAARLRRCPSCNRGFSANDLLSIHL 681

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>AMFR2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform 2 (EC 6.3.2.-)|
           (AMF receptor) (gp78)
          Length = 643

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRV 163
           GH+F    +++ ++    CPTCR  L I++  RV
Sbjct: 357 GHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRV 390

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>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 975

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261  HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
            H+FC + +K       +KCP C      ++F R+Y+
Sbjct: 939  HVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 974

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>BRE1A_CHICK (Q5ZLS3) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 984

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261  HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
            H+FC + +K       +KCP C      ++F R+Y+
Sbjct: 948  HVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 983

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>BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
            finger protein 20)
          Length = 973

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261  HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
            H+FC + +K       +KCP C      ++F R+Y+
Sbjct: 937  HVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYI 972

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>YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in chromosome II|
          Length = 269

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 264 GHIFCXKXIKASI---QXXKKCPTCRRKL 187
           GHIFC   I +++      +KCP CRRK+
Sbjct: 222 GHIFCNFCILSALGTTAATQKCPVCRRKV 250

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>RFWD2_MOUSE (Q9R1A8) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (mCOP1)
          Length = 733

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVY 160
           GH FC K I  S++   +CP C     + N   +Y
Sbjct: 154 GHSFCYKCIHQSLEDNNRCPKC--NYVVDNIDHLY 186

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>RFWD2_HUMAN (Q8NHY2) Ring finger and WD repeat domain protein 2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase COP1) (Constitutive
           photomorphogenesis protein 1 homolog) (hCOP1)
          Length = 731

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVY 160
           GH FC K I  S++   +CP C     + N   +Y
Sbjct: 152 GHSFCYKCIHQSLEDNNRCPKC--NYVVDNIDHLY 184

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>PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome|
           biogenesis factor 10)
          Length = 326

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRK 190
           GH+FC + I A      +CP CR K
Sbjct: 289 GHLFCWECITAWCSSKAECPLCREK 313

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>PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome|
           biogenesis factor 10) (RING finger protein 69)
          Length = 326

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRK 190
           GH+FC + I A      +CP CR K
Sbjct: 289 GHLFCWECITAWCSSKAECPLCREK 313

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>COP1_PEA (P93471) Ubiquitin ligase protein COP1 (EC 6.3.2.-) (Constitutive|
           photomorphogenesis protein 1)
          Length = 672

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 273 TIXGHIFCXKXIKASIQXXKKCPTCRRKLTISN-FPRVYL 157
           T  GH FC   I   ++    CP C   LT SN FP   L
Sbjct: 60  TACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLL 99

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>BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40) (Syntaxin-1-interacting RING finger
            protein) (Protein staring)
          Length = 1002

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261  HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
            H+FC + ++   +   +KCP C       +F RVY+
Sbjct: 966  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1001

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>BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261  HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
            H+FC + ++   +   +KCP C       +F RVY+
Sbjct: 965  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRVYI 1000

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>BRE1_YEAST (Q07457) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-) (Brefeldin|
           A-sensitivity protein 1)
          Length = 700

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
           GH+FC    K  +    +KCPTC +  + ++   V+L
Sbjct: 664 GHVFCENCCKERLAARMRKCPTCNKAFSSNDLLTVHL 700

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>AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2.19) (AMF|
           receptor)
          Length = 643

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPR 166
           GH+F    +++ ++    CPTCR  L I++  R
Sbjct: 357 GHLFHNSCLRSWLEQDTSCPTCRMSLNIADGSR 389

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>RAD18_CANGA (Q6FPI4) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 411

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVYL 157
           GH FC   I+  +    KCP C  +L  S     YL
Sbjct: 43  GHTFCSLCIRGYLSNEPKCPLCLHELRESMLRSEYL 78

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>BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261  HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
            H+FC + ++   +   +KCP C       +F R+Y+
Sbjct: 965  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40)
          Length = 1001

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261  HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
            H+FC + ++   +   +KCP C       +F R+Y+
Sbjct: 965  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING|
            finger protein 40) (95 kDa retinoblastoma-associated
            protein) (RBP95)
          Length = 1001

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261  HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
            H+FC + ++   +   +KCP C       +F R+Y+
Sbjct: 965  HVFCFECVRGRYEARQRKCPKCNAAFGAHDFHRIYI 1000

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>BRE1_CANGA (Q6FWF3) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 693

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
           GH+FC    K  +    +KCPTC +  + ++   V+L
Sbjct: 657 GHVFCEDCCKERLAARMRKCPTCNKPFSSNDLLMVHL 693

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>RN125_MOUSE (Q9D9R0) RING finger protein 125 (EC 6.3.2.-)|
          Length = 232

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKK--CPTCRRKLTISNFP 169
           GH+FC   I  SI+   K  CP CR  L     P
Sbjct: 52  GHVFCRSCIATSIKNNNKWTCPYCRAYLPSEGVP 85

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>RNG2B_XENLA (Q7ZWM8) Ubiquitin ligase protein RING2-B (EC 6.3.2.-) (RING finger|
           protein 2-B) (RING finger protein 1B-B) (RING1b-B)
          Length = 343

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 65  HRFCSDCIVTALRSGNKECPTCRKKL 90

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>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)|
           (Transcription repressor Ring1A)
          Length = 406

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 406

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger|
           protein 1) (RING1a)
          Length = 406

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)|
          Length = 377

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 37  HRFCSDCIVTALRSGNKECPTCRKKL 62

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>RING1_DROME (Q9VB08) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (dRING1)|
           (dRING protein) (Sex comb extra protein)
          Length = 435

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 64  HRFCSDCIVTALRSGNKECPTCRKKL 89

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>ZP2_MOUSE (P20239) Zona pellucida sperm-binding protein 2 precursor (Zona|
           pellucida glycoprotein ZP2) (Zona pellucida protein A)
          Length = 713

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVYLPMA-XN*NLSSHSWSI 112
           H FC   I+A      +   CRR L   +FP+++  +A  N N+S   W +
Sbjct: 131 HFFC-PAIQAETHEISEIVVCRRDLISFSFPQLFSRLADENQNVSEMGWIV 180

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>RNG2A_XENLA (Q66J69) Ubiquitin ligase protein RING2-A (EC 6.3.2.-) (RING finger|
           protein 2-A) (RING finger protein 1B-A) (RING1b-A)
          Length = 344

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 66  HRFCSDCIVTALRSGNKECPTCRKKL 91

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>RAD18_EMENI (Q02398) Postreplication repair ubiquitin-protein ligase E3 rad18|
           (EC 6.-.-.-)
          Length = 443

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 273 TIXGHIFCXKXIKASIQXXKKCPTCR 196
           T   H FC   I+  +    KCPTCR
Sbjct: 43  TSCSHTFCSLCIRRCLSTEGKCPTCR 68

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>RN141_CHICK (Q5ZM74) RING finger protein 141|
          Length = 230

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXXKKCPTCRRKLT 184
           H FC K I       + CP CRR++T
Sbjct: 171 HSFCQKCIDKWSDRHRSCPVCRRQVT 196

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>RN125_MACFA (Q95KF1) RING finger protein 125 (EC 6.3.2.-)|
          Length = 231

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXK-KCPTCRRKLTISNFP 169
           GH+FC   I  S++  K  CP CR  L     P
Sbjct: 52  GHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVP 84

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>RN125_HUMAN (Q96EQ8) RING finger protein 125 (EC 6.3.2.-) (T-cell RING|
           activation protein 1) (TRAC-1)
          Length = 231

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXK-KCPTCRRKLTISNFP 169
           GH+FC   I  S++  K  CP CR  L     P
Sbjct: 52  GHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVP 84

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>BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger|
           protein rfp-1)
          Length = 837

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
           H+FC   IK       +KCP C      ++F R+++
Sbjct: 802 HLFCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 837

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>RING2_RAT (Q4KLY4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 308

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>CM007_PONPY (Q5RD97) Protein C13orf7 homolog|
          Length = 726

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 270 IXGHIFCXKXIKASIQXXKKCPTCRRKLTISN 175
           I  H+FC   I   ++   +CP CR  +T  N
Sbjct: 32  INNHVFCSICIDLWLKNNSQCPACRVPITPEN 63

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>CM007_HUMAN (Q5W0B1) Protein C13orf7|
          Length = 726

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 270 IXGHIFCXKXIKASIQXXKKCPTCRRKLTISN 175
           I  H+FC   I   ++   +CP CR  +T  N
Sbjct: 32  INNHVFCSICIDLWLKNNSQCPACRVPITPEN 63

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>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger|
           protein rfp-1)
          Length = 828

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
           H+FC   IK       +KCP C      ++F R+++
Sbjct: 793 HLFCETCIKTMYDTRQRKCPKCNSNFGANDFHRIFI 828

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>RING2_PONPY (Q5R9J5) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_MOUSE (Q9CQJ4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_HUMAN (Q99496) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b) (RING
           finger protein BAP-1) (DinG protein)
           (Huntingtin-interacting protein 2-interacting protein 3)
           (HIP2-interacting protein 3)
          Length = 336

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>RING2_BRARE (Q803I4) Ubiquitin ligase protein RING2 (EC 6.3.2.-) (RING finger|
           protein 2) (RING finger protein 1B) (RING1b)
          Length = 336

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 261 HIFCXKXIKASIQXX-KKCPTCRRKL 187
           H FC   I  +++   K+CPTCR+KL
Sbjct: 69  HRFCADCIITALRSGNKECPTCRKKL 94

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>PEX12_DROME (Q9VPT5) Putative peroxisome assembly protein 12 (Peroxin-12)|
          Length = 297

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -1

Query: 273 TIXGHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVY 160
           ++ G++FC K I + ++    CP     +++ +  R+Y
Sbjct: 258 SVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIY 295

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>BRE1_KLULA (Q6CWM4) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 663

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
           GH+FC    K  +    +KCPTC +  + ++   ++L
Sbjct: 627 GHVFCDVCCKERLAARMRKCPTCNKPFSSNDLLSIHL 663

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>BRE1_ASHGO (Q757D9) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 643

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
           GH+FC    K  +    +KCPTC +  + ++   V+L
Sbjct: 607 GHVFCADCCKERLAARMRKCPTCNKGFSSNDLLVVHL 643

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>PEX10_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10)|
           (Pex10p) (PER8)
          Length = 381

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 264 GHIFCXKXIKASIQXXKKCPTCRRKLTISNFPRVY 160
           GH+FC   I       ++CP CR   T S+   +Y
Sbjct: 343 GHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLY 377

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>BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)|
          Length = 691

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 273 TIXGHIFCXKXIKASIQXX-KKCPTCRRKLTISNFPRVYL 157
           T+ GH+FC    +  +    ++CPTC +  + ++   ++L
Sbjct: 652 TVCGHVFCLGCTQERLAARLRRCPTCNKGFSANDLLSIHL 691


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,068,584
Number of Sequences: 219361
Number of extensions: 648368
Number of successful extensions: 1192
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result