ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26m13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463621.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1596 Score = 101 bits (51), Expect = 1e-18 Identities = 101/120 (84%) Strand = Plus / Minus Query: 155 gggaggtanacccgggggaagttgcttatggtcaacttcctccggcaggtagggcacttt 214 ||||| || || ||| |||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 146 gggagatacacgcggtggaagttgttcatggtcagcttcctccggcaggtagggcacttc 87 Query: 215 ttntnancctggatggaggccttgatncacttntggcaaaaaatgtggccncaaatggtc 274 || | | ||||||| ||||||||||| |||| | |||||||||||| || || |||||| Sbjct: 86 ttctgagcctggattgaggccttgatacactgcttgcaaaaaatgtgaccgcagatggtc 27
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 101 bits (51), Expect = 1e-18 Identities = 101/120 (84%) Strand = Plus / Minus Query: 155 gggaggtanacccgggggaagttgcttatggtcaacttcctccggcaggtagggcacttt 214 ||||| || || ||| |||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 40114023 gggagatacacgcggtggaagttgttcatggtcagcttcctccggcaggtagggcacttc 40113964 Query: 215 ttntnancctggatggaggccttgatncacttntggcaaaaaatgtggccncaaatggtc 274 || | | ||||||| ||||||||||| |||| | |||||||||||| || || |||||| Sbjct: 40113963 ttctgagcctggattgaggccttgatacactgcttgcaaaaaatgtgaccgcagatggtc 40113904
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 101 bits (51), Expect = 1e-18 Identities = 101/120 (84%) Strand = Plus / Minus Query: 155 gggaggtanacccgggggaagttgcttatggtcaacttcctccggcaggtagggcacttt 214 ||||| || || ||| |||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 57107 gggagatacacgcggtggaagttgttcatggtcagcttcctccggcaggtagggcacttc 57048 Query: 215 ttntnancctggatggaggccttgatncacttntggcaaaaaatgtggccncaaatggtc 274 || | | ||||||| ||||||||||| |||| | |||||||||||| || || |||||| Sbjct: 57047 ttctgagcctggattgaggccttgatacactgcttgcaaaaaatgtgaccgcagatggtc 56988
>dbj|AK105883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-D05, full insert sequence Length = 1095 Score = 101 bits (51), Expect = 1e-18 Identities = 101/120 (84%) Strand = Plus / Minus Query: 155 gggaggtanacccgggggaagttgcttatggtcaacttcctccggcaggtagggcacttt 214 ||||| || || ||| |||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 922 gggagatacacgcggtggaagttgttcatggtcagcttcctccggcaggtagggcacttc 863 Query: 215 ttntnancctggatggaggccttgatncacttntggcaaaaaatgtggccncaaatggtc 274 || | | ||||||| ||||||||||| |||| | |||||||||||| || || |||||| Sbjct: 862 ttctgagcctggattgaggccttgatacactgcttgcaaaaaatgtgaccgcagatggtc 803
>dbj|AK067058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M15, full insert sequence Length = 1243 Score = 101 bits (51), Expect = 1e-18 Identities = 101/120 (84%) Strand = Plus / Minus Query: 155 gggaggtanacccgggggaagttgcttatggtcaacttcctccggcaggtagggcacttt 214 ||||| || || ||| |||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 1005 gggagatacacgcggtggaagttgttcatggtcagcttcctccggcaggtagggcacttc 946 Query: 215 ttntnancctggatggaggccttgatncacttntggcaaaaaatgtggccncaaatggtc 274 || | | ||||||| ||||||||||| |||| | |||||||||||| || || |||||| Sbjct: 945 ttctgagcctggattgaggccttgatacactgcttgcaaaaaatgtgaccgcagatggtc 886
>dbj|AK059108.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-D10, full insert sequence Length = 1147 Score = 101 bits (51), Expect = 1e-18 Identities = 101/120 (84%) Strand = Plus / Minus Query: 155 gggaggtanacccgggggaagttgcttatggtcaacttcctccggcaggtagggcacttt 214 ||||| || || ||| |||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 922 gggagatacacgcggtggaagttgttcatggtcagcttcctccggcaggtagggcacttc 863 Query: 215 ttntnancctggatggaggccttgatncacttntggcaaaaaatgtggccncaaatggtc 274 || | | ||||||| ||||||||||| |||| | |||||||||||| || || |||||| Sbjct: 862 ttctgagcctggattgaggccttgatacactgcttgcaaaaaatgtgaccgcagatggtc 803
>gb|AC068759.11| Homo sapiens 3 BAC RP11-324C10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183357 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 aagttgcttatggtcaactt 192 |||||||||||||||||||| Sbjct: 123644 aagttgcttatggtcaactt 123625 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,385,459 Number of Sequences: 3902068 Number of extensions: 1385459 Number of successful extensions: 19502 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19485 Number of HSP's gapped (non-prelim): 17 length of query: 276 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 254 effective length of database: 17,147,199,772 effective search space: 4355388742088 effective search space used: 4355388742088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
