>gb|AF291049.1| Mus musculus RNA adenosine deaminase 2 (Adarb1) mRNA, complete cds,
           alternatively spliced
          Length = 2681

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 307 cccccaaggacagcagcacacctg 330

>gb|AF403109.2| Mus musculus adenosine deaminase (Adarb1) mRNA, complete cds,
           alternatively spliced
          Length = 6587

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 471 cccccaaggacagcagcacacctg 494

>gb|AF403108.2| Mus musculus adenosine deaminase (Adarb1) mRNA, complete cds,
           alternatively spliced
          Length = 6557

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 471 cccccaaggacagcagcacacctg 494

>gb|AF403107.2| Mus musculus adenosine deaminase (Adarb1) mRNA, complete cds,
           alternatively spliced
          Length = 6540

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 424 cccccaaggacagcagcacacctg 447

>gb|AF403106.2| Mus musculus adenosine deaminase (Adarb1) mRNA, complete cds,
           alternatively spliced
          Length = 6510

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 424 cccccaaggacagcagcacacctg 447

>gb|AF525421.1| Mus musculus adenosine deaminase ADAR2 mRNA, complete cds;
           alternatively spliced
          Length = 6917

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 497 cccccaaggacagcagcacacctg 520

>ref|NM_001024837.1| Mus musculus adenosine deaminase, RNA-specific, B1 (Adarb1),
           transcript variant 2, mRNA
          Length = 6619

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 472 cccccaaggacagcagcacacctg 495

>ref|NM_130895.2| Mus musculus adenosine deaminase, RNA-specific, B1 (Adarb1),
           transcript variant 1, mRNA
          Length = 6589

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 472 cccccaaggacagcagcacacctg 495

>ref|NM_001024838.1| Mus musculus adenosine deaminase, RNA-specific, B1 (Adarb1),
           transcript variant 3, mRNA
          Length = 6662

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 545 cccccaaggacagcagcacacctg 568

>ref|NM_001024840.1| Mus musculus adenosine deaminase, RNA-specific, B1 (Adarb1),
           transcript variant 4, mRNA
          Length = 6665

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 518 cccccaaggacagcagcacacctg 541

>ref|NM_001024839.1| Mus musculus adenosine deaminase, RNA-specific, B1 (Adarb1),
           transcript variant 5, mRNA
          Length = 6635

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 518 cccccaaggacagcagcacacctg 541

>dbj|AK138318.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230065F14 product:adenosine
           deaminase, RNA-specific, B1, full insert sequence
          Length = 2578

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 465 cccccaaggacagcagcacacctg 488

>dbj|AK141777.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:D030063D19 product:adenosine
           deaminase, RNA-specific, B1, full insert sequence
          Length = 3016

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 444 cccccaaggacagcagcacacctg 467

>dbj|AK147298.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1010E10 product:adenosine deaminase,
           RNA-specific, B1, full insert sequence
          Length = 6664

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 551 cccccaaggacagcagcacacctg 574

>gb|BC051107.1| Mus musculus adenosine deaminase, RNA-specific, B1, mRNA (cDNA
           clone IMAGE:5361440), containing frame-shift errors
          Length = 2585

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 457 cccccaaggacagcagcacacctg 480

>gb|U73197.1|HSU73197 Homo sapiens RNA adenosine deaminase (RED1) mRNA, complete cds
          Length = 2136

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 77  cccccaaggacagcagcacacctg 100

>gb|AY162454.1| Mus musculus adenosine deaminase (Adarb1) mRNA, complete cds,
           alternatively spliced
          Length = 6583

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 37  cccccaaggacagcagcacacctg 60
           ||||||||||||||||||||||||
Sbjct: 497 cccccaaggacagcagcacacctg 520

>gb|AC155176.6| Mus musculus 10 BAC RP24-219F17 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 186725

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 37    cccccaaggacagcagcacacctg 60
             ||||||||||||||||||||||||
Sbjct: 84302 cccccaaggacagcagcacacctg 84325

>ref|NM_012894.1| Rattus norvegicus adenosine deaminase, RNA-specific, B1 (Adarb1),
           mRNA
          Length = 2789

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 37  cccccaaggacagcagcacacc 58
           ||||||||||||||||||||||
Sbjct: 196 cccccaaggacagcagcacacc 217

>gb|DQ163912.1| Bacteriophage F10, complete genome
          Length = 39199

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 321   ctcgtcccggtaggtctccgga 342
             ||||||||||||||||||||||
Sbjct: 14458 ctcgtcccggtaggtctccgga 14437

>gb|U43534.1|RNU43534 Rattus norvegicus double-stranded RNA-specific editase (RED1) mRNA,
           complete cds
          Length = 2789

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 37  cccccaaggacagcagcacacc 58
           ||||||||||||||||||||||
Sbjct: 196 cccccaaggacagcagcacacc 217

>gb|AC146967.3| Bos taurus clone RP42-279M12, complete sequence
          Length = 186611

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     ccccaaggacagcagcacacc 58
              |||||||||||||||||||||
Sbjct: 170019 ccccaaggacagcagcacacc 170039

>ref|XM_873816.1| PREDICTED: Bos taurus similar to remodeling and spacing factor 1,
            transcript variant 4 (LOC541248), mRNA
          Length = 5017

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 36   acccccaaggacagcagcaca 56
            |||||||||||||||||||||
Sbjct: 4034 acccccaaggacagcagcaca 4054

>ref|XM_864539.1| PREDICTED: Bos taurus similar to remodeling and spacing factor 1,
            transcript variant 2 (LOC541248), mRNA
          Length = 5372

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 36   acccccaaggacagcagcaca 56
            |||||||||||||||||||||
Sbjct: 4389 acccccaaggacagcagcaca 4409

>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 38      ccccaaggacagcagcacacc 58
               |||||||||||||||||||||
Sbjct: 2056079 ccccaaggacagcagcacacc 2056099

>gb|AY644518.1| Bos taurus T cell receptor gamma gene, partial sequence
          Length = 188109

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    ccccaaggacagcagcacacc 58
             |||||||||||||||||||||
Sbjct: 18720 ccccaaggacagcagcacacc 18740

>emb|X52255.1|HSCST3G Human CST3 gene for cystatin C
          Length = 7292

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 catctccctcctccactcct 394
           ||||||||||||||||||||
Sbjct: 438 catctccctcctccactcct 419

>ref|NG_000839.1| Homo sapiens cystatin locus (CST@) on chromosome 20
          Length = 477159

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    catctccctcctccactcct 394
              ||||||||||||||||||||
Sbjct: 277936 catctccctcctccactcct 277917

>ref|XM_849502.1| PREDICTED: Canis familiaris similar to S-adenosylhomocysteine
           hydrolase-like 1 (LOC611790), mRNA
          Length = 3920

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 acatctccctcctccactcc 393
           ||||||||||||||||||||
Sbjct: 45  acatctccctcctccactcc 26

>emb|AL121894.26|HSA218C14 Human DNA sequence from clone RP11-218C14 on chromosome 20 Contains the
              3' end of a novel gene, two genes for novel proteins
              similar to cystatin 9-like (mouse) (CST9L), the CST9L gene
              for cystatin 9-like (mouse), a cystatin 9-like (mouse)
              pseudogene, the CST3 gene for cystatin C, a novel gene and
              a CpG island, complete sequence
          Length = 141079

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    catctccctcctccactcct 394
              ||||||||||||||||||||
Sbjct: 108080 catctccctcctccactcct 108099

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 228      gacgatcaatcaaggccaaa 247
                ||||||||||||||||||||
Sbjct: 25121972 gacgatcaatcaaggccaaa 25121953

>gb|AC019051.8| Homo sapiens BAC clone RP11-92L24 from 2, complete sequence
          Length = 137248

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    taattgaacccccaaggaca 48
             ||||||||||||||||||||
Sbjct: 33251 taattgaacccccaaggaca 33232

>emb|BX813318.3| Mouse DNA sequence from clone RP23-123N16 on chromosome 2, complete
            sequence
          Length = 66128

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   aacccccaaggacagcagca 54
            ||||||||||||||||||||
Sbjct: 4214 aacccccaaggacagcagca 4233

>dbj|AP007205.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0048L03
          Length = 142377

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   gacgatcaatcaaggccaaa 247
             ||||||||||||||||||||
Sbjct: 68158 gacgatcaatcaaggccaaa 68139

>emb|X61681.1|HSCYSTC1 Homo sapiens partial gene for cystatin C, exon 1 and joined CDS
          Length = 1662

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 375 catctccctcctccactcct 394
           ||||||||||||||||||||
Sbjct: 274 catctccctcctccactcct 255

>gb|AC132312.4| Mus musculus BAC clone RP24-298A20 from 12, complete sequence
          Length = 177464

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 307    tcaccaccatcccactcgtcccgg 330
              ||||||||||||||||| ||||||
Sbjct: 171813 tcaccaccatcccactcttcccgg 171836

>gb|AC132354.2| Mus musculus BAC clone RP24-112H7 from 12, complete sequence
          Length = 180298

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 307   tcaccaccatcccactcgtcccgg 330
             ||||||||||||||||| ||||||
Sbjct: 68543 tcaccaccatcccactcttcccgg 68566

>emb|AL732485.8| Mouse DNA sequence from clone RP23-70G24 on chromosome 2, complete
             sequence
          Length = 92562

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   tcctcaacctccgttccact 193
             ||||||||||||||||||||
Sbjct: 26274 tcctcaacctccgttccact 26293


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,237,026
Number of Sequences: 3902068
Number of extensions: 4237026
Number of successful extensions: 68577
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68495
Number of HSP's gapped (non-prelim): 82
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)