Clone Name | rbasd27b08 |
---|---|
Clone Library Name | barley_pub |
>emb|AL772237.12| Mouse DNA sequence from clone RP23-14I13 on chromosome 4, complete sequence Length = 169452 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 agagtaacaagaagtgtgtaat 152 |||||||||||||||||||||| Sbjct: 11380 agagtaacaagaagtgtgtaat 11359
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 197 ttctcaacagctcctattacc 217 ||||||||||||||||||||| Sbjct: 1147755 ttctcaacagctcctattacc 1147775
>ref|XM_570139.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CND04130) partial mRNA Length = 4791 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 197 ttctcaacagctcctattacc 217 ||||||||||||||||||||| Sbjct: 3647 ttctcaacagctcctattacc 3627
>gb|AC171105.1| Drosophila melanogaster clone CH223-40I08, complete sequence Length = 53089 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 agaagtgtgtaattactcat 159 |||||||||||||||||||| Sbjct: 9298 agaagtgtgtaattactcat 9317
>gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, complete sequence Length = 165714 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 269 aaaaaacagagatgccaacatgcaaacagagt 300 |||| |||| ||||||||||| |||||||||| Sbjct: 47775 aaaacacagtgatgccaacatacaaacagagt 47744
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ctacagcagagtaacaagaa 143 |||||||||||||||||||| Sbjct: 143870 ctacagcagagtaacaagaa 143851
>gb|AC158349.5| Mus musculus chromosome 8, clone RP24-229D22, complete sequence Length = 163656 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 269 aaaaaacagagatgccaacatgcaaacagagt 300 |||| |||| ||||||||||| |||||||||| Sbjct: 118942 aaaacacagtgatgccaacatacaaacagagt 118911
>emb|Z73495.1|HSE116C6 Human DNA sequence from clone LL22NC01-116C6 on chromosome 22 Contains a novel gene, complete sequence Length = 38811 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tgtgtatatgttatgttaca 20 |||||||||||||||||||| Sbjct: 5382 tgtgtatatgttatgttaca 5363
>emb|AL162419.34| Human DNA sequence from clone RP11-358M14 on chromosome 9 Contains the 5' end of a variant of a novel gene (FLJ90578) and a CpG island, complete sequence Length = 174535 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tgtgtaattactcattctcc 164 |||||||||||||||||||| Sbjct: 11535 tgtgtaattactcattctcc 11516
>gb|AC087880.24| Homo sapiens 12q BAC RP11-121J20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188361 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 ttactcattctccacatctc 171 |||||||||||||||||||| Sbjct: 84060 ttactcattctccacatctc 84079
>emb|AL031024.1|DMC196F3 Drosophila melanogaster cosmid clone 196F3 Length = 35835 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 agaagtgtgtaattactcat 159 |||||||||||||||||||| Sbjct: 25452 agaagtgtgtaattactcat 25433
>gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177096 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 agaagtgtgtaattactcat 159 |||||||||||||||||||| Sbjct: 8553 agaagtgtgtaattactcat 8534
>gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chromosome unknown, complete sequence Length = 202104 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tgtgtatatgttatgttaca 20 |||||||||||||||||||| Sbjct: 53926 tgtgtatatgttatgttaca 53945
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ctacagcagagtaacaagaa 143 |||||||||||||||||||| Sbjct: 18408505 ctacagcagagtaacaagaa 18408486
>dbj|AP001299.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F4B12 Length = 37262 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 agctttcagtctcaagtagattac 79 |||||||||||||||| ||||||| Sbjct: 22124 agctttcagtctcaagaagattac 22147
>gb|AC007955.4|AC007955 Homo sapiens chromosome 14 clone CTD-3014H8 and RP11-285P21 map 14q24.3, complete sequence Length = 163312 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 ctgcttgtggctagatcggt 597 |||||||||||||||||||| Sbjct: 66177 ctgcttgtggctagatcggt 66196
>emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-63D17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177172 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 ctgcttgtggctagatcggt 597 |||||||||||||||||||| Sbjct: 50696 ctgcttgtggctagatcggt 50677
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 agaagtgtgtaattactcat 159 |||||||||||||||||||| Sbjct: 70863 agaagtgtgtaattactcat 70844
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 caacacacgggacggttgaa 348 |||||||||||||||||||| Sbjct: 2800892 caacacacgggacggttgaa 2800911
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 ctacagcagagtaacaagaa 143 |||||||||||||||||||| Sbjct: 18567906 ctacagcagagtaacaagaa 18567887
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ctctaacagctttcagtctc 68 |||||||||||||||||||| Sbjct: 1433216 ctctaacagctttcagtctc 1433235 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,615,095 Number of Sequences: 3902068 Number of extensions: 4615095 Number of successful extensions: 64941 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64826 Number of HSP's gapped (non-prelim): 115 length of query: 604 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 581 effective length of database: 17,143,297,704 effective search space: 9960255966024 effective search space used: 9960255966024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)