ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL772237.12| Mouse DNA sequence from clone RP23-14I13 on chr... 44 0.53
2gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 2.1
3ref|XM_570139.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 2.1
4gb|AC171105.1| Drosophila melanogaster clone CH223-40I08, comple... 40 8.2
5gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, comp... 40 8.2
6gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
7gb|AC158349.5| Mus musculus chromosome 8, clone RP24-229D22, com... 40 8.2
8emb|Z73495.1|HSE116C6 Human DNA sequence from clone LL22NC01-116... 40 8.2
9emb|AL162419.34| Human DNA sequence from clone RP11-358M14 on ch... 40 8.2
10gb|AC087880.24| Homo sapiens 12q BAC RP11-121J20 (Roswell Park C... 40 8.2
11emb|AL031024.1|DMC196F3 Drosophila melanogaster cosmid clone 196F3 40 8.2
12gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell ... 40 8.2
13gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chrom... 40 8.2
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
15dbj|AP001299.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.2
16gb|AC007955.4|AC007955 Homo sapiens chromosome 14 clone CTD-3014... 40 8.2
17emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-6... 40 8.2
18gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 o... 40 8.2
19gb|AE016830.1| Enterococcus faecalis V583, complete genome 40 8.2
20gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
21emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 8.2

>emb|AL772237.12| Mouse DNA sequence from clone RP23-14I13 on chromosome 4, complete
             sequence
          Length = 169452

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 131   agagtaacaagaagtgtgtaat 152
             ||||||||||||||||||||||
Sbjct: 11380 agagtaacaagaagtgtgtaat 11359



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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 197     ttctcaacagctcctattacc 217
               |||||||||||||||||||||
Sbjct: 1147755 ttctcaacagctcctattacc 1147775



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>ref|XM_570139.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CND04130) partial mRNA
          Length = 4791

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 197  ttctcaacagctcctattacc 217
            |||||||||||||||||||||
Sbjct: 3647 ttctcaacagctcctattacc 3627



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>gb|AC171105.1| Drosophila melanogaster clone CH223-40I08, complete sequence
          Length = 53089

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 140  agaagtgtgtaattactcat 159
            ||||||||||||||||||||
Sbjct: 9298 agaagtgtgtaattactcat 9317



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>gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, complete sequence
          Length = 165714

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 269   aaaaaacagagatgccaacatgcaaacagagt 300
             |||| |||| ||||||||||| ||||||||||
Sbjct: 47775 aaaacacagtgatgccaacatacaaacagagt 47744



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>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10,
              complete sequence
          Length = 158833

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    ctacagcagagtaacaagaa 143
              ||||||||||||||||||||
Sbjct: 143870 ctacagcagagtaacaagaa 143851



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>gb|AC158349.5| Mus musculus chromosome 8, clone RP24-229D22, complete sequence
          Length = 163656

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 269    aaaaaacagagatgccaacatgcaaacagagt 300
              |||| |||| ||||||||||| ||||||||||
Sbjct: 118942 aaaacacagtgatgccaacatacaaacagagt 118911



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>emb|Z73495.1|HSE116C6 Human DNA sequence from clone LL22NC01-116C6 on chromosome 22
            Contains a novel gene, complete sequence
          Length = 38811

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    tgtgtatatgttatgttaca 20
            ||||||||||||||||||||
Sbjct: 5382 tgtgtatatgttatgttaca 5363



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>emb|AL162419.34| Human DNA sequence from clone RP11-358M14 on chromosome 9 Contains the
             5' end of a variant of a novel gene (FLJ90578) and a CpG
             island, complete sequence
          Length = 174535

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   tgtgtaattactcattctcc 164
             ||||||||||||||||||||
Sbjct: 11535 tgtgtaattactcattctcc 11516



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>gb|AC087880.24| Homo sapiens 12q BAC RP11-121J20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 188361

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   ttactcattctccacatctc 171
             ||||||||||||||||||||
Sbjct: 84060 ttactcattctccacatctc 84079



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>emb|AL031024.1|DMC196F3 Drosophila melanogaster cosmid clone 196F3
          Length = 35835

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   agaagtgtgtaattactcat 159
             ||||||||||||||||||||
Sbjct: 25452 agaagtgtgtaattactcat 25433



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>gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 177096

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  agaagtgtgtaattactcat 159
            ||||||||||||||||||||
Sbjct: 8553 agaagtgtgtaattactcat 8534



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>gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chromosome unknown,
             complete sequence
          Length = 202104

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     tgtgtatatgttatgttaca 20
             ||||||||||||||||||||
Sbjct: 53926 tgtgtatatgttatgttaca 53945



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      ctacagcagagtaacaagaa 143
                ||||||||||||||||||||
Sbjct: 18408505 ctacagcagagtaacaagaa 18408486



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>dbj|AP001299.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F4B12
          Length = 37262

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    agctttcagtctcaagtagattac 79
             |||||||||||||||| |||||||
Sbjct: 22124 agctttcagtctcaagaagattac 22147



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>gb|AC007955.4|AC007955 Homo sapiens chromosome 14 clone CTD-3014H8 and RP11-285P21 map
             14q24.3, complete sequence
          Length = 163312

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 578   ctgcttgtggctagatcggt 597
             ||||||||||||||||||||
Sbjct: 66177 ctgcttgtggctagatcggt 66196



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>emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-63D17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177172

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   ctgcttgtggctagatcggt 597
             ||||||||||||||||||||
Sbjct: 50696 ctgcttgtggctagatcggt 50677



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>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete
             sequence
          Length = 304204

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   agaagtgtgtaattactcat 159
             ||||||||||||||||||||
Sbjct: 70863 agaagtgtgtaattactcat 70844



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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 329     caacacacgggacggttgaa 348
               ||||||||||||||||||||
Sbjct: 2800892 caacacacgggacggttgaa 2800911



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      ctacagcagagtaacaagaa 143
                ||||||||||||||||||||
Sbjct: 18567906 ctacagcagagtaacaagaa 18567887



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 49      ctctaacagctttcagtctc 68
               ||||||||||||||||||||
Sbjct: 1433216 ctctaacagctttcagtctc 1433235


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,615,095
Number of Sequences: 3902068
Number of extensions: 4615095
Number of successful extensions: 64941
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64826
Number of HSP's gapped (non-prelim): 115
length of query: 604
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 581
effective length of database: 17,143,297,704
effective search space: 9960255966024
effective search space used: 9960255966024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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