ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BA... 54 6e-04
2ref|NM_180364.2| Arabidopsis thaliana AFC1 (ARABIDOPSIS FUS3-COM... 50 0.009
3ref|NM_202696.1| Arabidopsis thaliana AFC1 (ARABIDOPSIS FUS3-COM... 50 0.009
4ref|NM_115217.1| Arabidopsis thaliana AFC1 (ARABIDOPSIS FUS3-COM... 50 0.009
5ref|NM_001035776.1| Arabidopsis thaliana AFC1 (ARABIDOPSIS FUS3-... 50 0.009
6gb|AY034936.2| Arabidopsis thaliana At3g53570 mRNA sequence 50 0.009
7gb|U16176.1|ATU16176 Arabidopsis thaliana protein kinase (AFC1) ... 50 0.009
8dbj|D45354.1|ATHPKAME2B Arabidopsis thaliana AME2 mRNA for prote... 50 0.009
9gb|U73937.1|NTU73937 Nicotiana tabacum PK12 protein kinase (PK12... 48 0.036
10dbj|AK104229.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
11dbj|AK066287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
12dbj|AK061708.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
13gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p... 44 0.56
14gb|BC027502.1| Mus musculus THAP domain containing, apoptosis as... 42 2.2
15gb|AC164956.2| Mus musculus BAC clone RP24-250C7 from chromosome... 42 2.2
16ref|XM_600090.2| PREDICTED: Bos taurus similar to tigger transpo... 42 2.2
17gb|AY570226.1| Potamopyrgus antipodarum haplotype 47 cytochrome ... 42 2.2
18gb|AY570222.1| Potamopyrgus antipodarum haplotype 43 cytochrome ... 42 2.2
19gb|AY570203.1| Potamopyrgus antipodarum haplotype 24 cytochrome ... 42 2.2
20gb|AY570198.1| Potamopyrgus antipodarum haplotype 19 cytochrome ... 42 2.2
21gb|AY570194.1| Potamopyrgus antipodarum haplotype 13 cytochrome ... 42 2.2
22gb|AY570192.1| Potamopyrgus antipodarum haplotype 11 cytochrome ... 42 2.2
23gb|AY570191.1| Potamopyrgus antipodarum haplotype 10 cytochrome ... 42 2.2
24ref|XM_753578.1| Ustilago maydis 521 hypothetical protein (UM025... 42 2.2
25gb|AC163291.3| Mus musculus BAC clone RP23-263M4 from chromosome... 42 2.2
26gb|AC079857.5| Homo sapiens BAC clone RP11-589E1 from 4, complet... 42 2.2
27dbj|AK081303.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 2.2
28dbj|AK009162.1| Mus musculus adult male tongue cDNA, RIKEN full-... 42 2.2
29dbj|AK051198.1| Mus musculus 12 days embryo spinal ganglion cDNA... 42 2.2
30dbj|AK018577.1| Mus musculus adult male colon cDNA, RIKEN full-l... 42 2.2
31emb|BX822243.1|CNS0A7TI Arabidopsis thaliana Full-length cDNA Co... 42 2.2
32gb|AC126943.5| Mus musculus BAC clone RP23-307F3 from chromosome... 42 2.2
33gb|AF234652.1|AF234652 Mesembryanthemum crystallinum protein kin... 42 2.2
34gb|AY111089.1| Zea mays CL31185_3 mRNA sequence 42 2.2
35gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 42 2.2
36emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chr... 42 2.2
37ref|NM_025780.2| Mus musculus THAP domain containing, apoptosis ... 42 2.2
38ref|NM_001002980.1| Canis familiaris collagen, type VII, alpha 1... 40 8.7
39gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 8.7
40gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 8.7
41gb|AC087327.7| Trypanosoma brucei chromosome 4 clone RPCI93-3I12... 40 8.7
42gb|AC132441.3| Mus musculus BAC clone RP23-239J2 from chromosome... 40 8.7
43gb|BT013142.1| Lycopersicon esculentum clone 134136R, mRNA sequence 40 8.7
44gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosom... 40 8.7
45gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 8.7
46gb|AC123056.4| Mus musculus BAC clone RP23-182H4 from chromosome... 40 8.7
47gb|AC092350.4| Homo sapiens chromosome 16 clone RP11-29G3, compl... 40 8.7
48ref|XM_661756.1| Cryptosporidium hominis TU502 60S ribosomal pro... 40 8.7
49gb|AC159648.2| Mus musculus BAC clone RP23-38A15 from chromosome... 40 8.7
50gb|AY183408.1| Canis familiaris type VII collagen mRNA, complete... 40 8.7
51gb|AC159645.2| Mus musculus BAC clone RP23-242E11 from chromosom... 40 8.7
52gb|AC092627.2| Homo sapiens BAC clone RP11-271B8 from 4, complet... 40 8.7
53dbj|AK140025.1| Mus musculus adult male corpora quadrigemina cDN... 40 8.7
54gb|DP000032.1| Felis catus target 116 genomic scaffold 40 8.7
55gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosom... 40 8.7
56ref|XM_626665.1| Cryptosporidium parvum Iowa II 60S ribosomal pr... 40 8.7
57dbj|AK087928.1| Mus musculus 2 days neonate thymus thymic cells ... 40 8.7
58gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 8.7
59dbj|AB192871.1| Vargula hilgendorfii mitochondrial gene for cyto... 40 8.7
60gb|U75930.2|OPU75930 Orgyia pseudotsugata multicapsid nucleopoly... 40 8.7
61ref|XM_345789.2| PREDICTED: Rattus norvegicus nuclear factor I/C... 40 8.7
62gb|AC055811.20| Homo sapiens chromosome 17, clone RP11-45M22, co... 40 8.7
63gb|AC009069.3|AC009069 Homo sapiens chromosome 16 clone RP11-314... 40 8.7
64dbj|AB012233.2| Rattus norvegicus mRNA for NF1-C2, complete cds 40 8.7
65emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chr... 40 8.7
66gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, comple... 40 8.7
67gb|U62808.1|FAU62808 Flavobacterium ATCC21588 geranylgeranyl syn... 40 8.7
68gb|AC163645.5| Mus musculus BAC clone RP23-206F16 from chromosom... 40 8.7
69emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on ch... 40 8.7
70dbj|AP006698.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 8.7
71emb|AL808126.10| Mouse DNA sequence from clone RP23-37B4 on chro... 40 8.7
72emb|AL772359.8| Mouse DNA sequence from clone RP23-305E10 on chr... 40 8.7
73emb|AJ009613.4|HSAJ9613 Homo sapiens chromosome 17 sequence from... 40 8.7
74emb|AL663030.12| Mouse DNA sequence from clone RP23-84C12 on chr... 40 8.7
75gb|AC139856.12| Mus musculus chromosome 8, clone RP23-52J10, com... 40 8.7 
>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12
          Length = 144628

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 458    atcaggtccccggcagagtgatccacatgctgcatcaccaggttctg 504
              ||||| || ||||| |||||||||||||||||||| | |||||||||
Sbjct: 102273 atcagatcaccggctgagtgatccacatgctgcattatcaggttctg 102319
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>ref|NM_180364.2| Arabidopsis thaliana AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1);
            ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-ty> AT3G53570 (AFC1)
            transcript variant AT3G53570.1 mRNA, complete cds
          Length = 1887

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 458  atcaggtccccggcagagtgatccacatgctgcatcaccaggttc 502
            ||||| || ||||| |||||||||||||||||||| | |||||||
Sbjct: 1624 atcagatcaccggctgagtgatccacatgctgcattatcaggttc 1580
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>ref|NM_202696.1| Arabidopsis thaliana AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1);
            ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-ty> AT3G53570 (AFC1)
            transcript variant AT3G53570.3 mRNA, complete cds
          Length = 1659

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 458  atcaggtccccggcagagtgatccacatgctgcatcaccaggttc 502
            ||||| || ||||| |||||||||||||||||||| | |||||||
Sbjct: 1396 atcagatcaccggctgagtgatccacatgctgcattatcaggttc 1352
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>ref|NM_115217.1| Arabidopsis thaliana AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1);
            ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-ty> AT3G53570 (AFC1)
            transcript variant AT3G53570.2 mRNA, complete cds
          Length = 1732

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 458  atcaggtccccggcagagtgatccacatgctgcatcaccaggttc 502
            ||||| || ||||| |||||||||||||||||||| | |||||||
Sbjct: 1422 atcagatcaccggctgagtgatccacatgctgcattatcaggttc 1378
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>ref|NM_001035776.1| Arabidopsis thaliana AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1);
            ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-ty> AT3G53570 (AFC1)
            transcript variant AT3G53570.4 mRNA, complete cds
          Length = 1847

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 458  atcaggtccccggcagagtgatccacatgctgcatcaccaggttc 502
            ||||| || ||||| |||||||||||||||||||| | |||||||
Sbjct: 1423 atcagatcaccggctgagtgatccacatgctgcattatcaggttc 1379
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>gb|AY034936.2| Arabidopsis thaliana At3g53570 mRNA sequence
          Length = 1558

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 458  atcaggtccccggcagagtgatccacatgctgcatcaccaggttc 502
            ||||| || ||||| |||||||||||||||||||| | |||||||
Sbjct: 1399 atcagatcaccggctgagtgatccacatgctgcattatcaggttc 1355
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>gb|U16176.1|ATU16176 Arabidopsis thaliana protein kinase (AFC1) mRNA, complete cds
          Length = 1732

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 458  atcaggtccccggcagagtgatccacatgctgcatcaccaggttc 502
            ||||| || ||||| |||||||||||||||||||| | |||||||
Sbjct: 1422 atcagatcaccggctgagtgatccacatgctgcattatcaggttc 1378
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>dbj|D45354.1|ATHPKAME2B Arabidopsis thaliana AME2 mRNA for protein kinase, complete cds
          Length = 1716

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 458  atcaggtccccggcagagtgatccacatgctgcatcaccaggttc 502
            ||||| || ||||| |||||||||||||||||||| | |||||||
Sbjct: 1402 atcagatcaccggctgagtgatccacatgctgcattatcaggttc 1358
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>gb|U73937.1|NTU73937 Nicotiana tabacum PK12 protein kinase (PK12) mRNA, complete cds
          Length = 1869

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 476  tgatccacatgctgcatcaccaggttctggaggcgaggcagctt 519
            ||||| ||||||||||||||||  ||||| || |||||||||||
Sbjct: 1244 tgatcaacatgctgcatcaccaaattctgaagacgaggcagctt 1201
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>dbj|AK104229.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-D03, full
           insert sequence
          Length = 1247

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 471 cagagtgatccacatgctgcatcaccaggttctggaggcgaggcagcttgagaacagctc 530
           |||| ||||| ||||  ||||||||||| ||||| || || |||||||| | ||||||| 
Sbjct: 990 cagaatgatctacattttgcatcaccagattctgaagacgtggcagcttcataacagctt 931

                  
Query: 531 tcatgct 537
           |||||||
Sbjct: 930 tcatgct 924
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>dbj|AK066287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013064I06, full
            insert sequence
          Length = 1336

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                        
Query: 471  cagagtgatccacatgctgcatcaccaggttctggaggcgaggcagcttgagaacagctc 530
            |||| ||||| ||||  ||||||||||| ||||| || || |||||||| | ||||||| 
Sbjct: 1019 cagaatgatctacattttgcatcaccagattctgaagacgtggcagcttcataacagctt 960

                   
Query: 531  tcatgct 537
            |||||||
Sbjct: 959  tcatgct 953
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>dbj|AK061708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F11, full
           insert sequence
          Length = 767

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 471 cagagtgatccacatgctgcatcaccaggttctggaggcgaggcagcttgagaacagctc 530
           |||| ||||| ||||  ||||||||||| ||||| || || |||||||| | ||||||| 
Sbjct: 450 cagaatgatctacattttgcatcaccagattctgaagacgtggcagcttcataacagctt 391

                  
Query: 531 tcatgct 537
           |||||||
Sbjct: 390 tcatgct 384
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>gb|AC090042.2| Homo sapiens chromosome 3 clone RP11-21B12 map 3p, complete sequence
          Length = 167559

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 252   tctcaagcttgctatttccttgctgc 277
             ||||||||||||||||| ||||||||
Sbjct: 69093 tctcaagcttgctatttgcttgctgc 69118
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>gb|BC027502.1| Mus musculus THAP domain containing, apoptosis associated protein
           2, mRNA (cDNA clone MGC:41034 IMAGE:1515752), complete
           cds
          Length = 1145

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 252 tctcaagcttgctatttcctt 272
           |||||||||||||||||||||
Sbjct: 512 tctcaagcttgctatttcctt 492
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>gb|AC164956.2| Mus musculus BAC clone RP24-250C7 from chromosome 12, complete sequence
          Length = 192647

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 301   tctgtcagtgtttgtttgttt 321
             |||||||||||||||||||||
Sbjct: 66085 tctgtcagtgtttgtttgttt 66065
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>ref|XM_600090.2| PREDICTED: Bos taurus similar to tigger transposable element derived
            1 (LOC521820), mRNA
          Length = 1830

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 438  ggaggccctgcagcagcccga 458
            |||||||||||||||||||||
Sbjct: 1817 ggaggccctgcagcagcccga 1797
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>gb|AY570226.1| Potamopyrgus antipodarum haplotype 47 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 431

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gttttaactatggctactgct 214
           |||||||||||||||||||||
Sbjct: 197 gttttaactatggctactgct 177
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>gb|AY570222.1| Potamopyrgus antipodarum haplotype 43 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 431

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gttttaactatggctactgct 214
           |||||||||||||||||||||
Sbjct: 197 gttttaactatggctactgct 177
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>gb|AY570203.1| Potamopyrgus antipodarum haplotype 24 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 431

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gttttaactatggctactgct 214
           |||||||||||||||||||||
Sbjct: 197 gttttaactatggctactgct 177
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>gb|AY570198.1| Potamopyrgus antipodarum haplotype 19 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 431

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gttttaactatggctactgct 214
           |||||||||||||||||||||
Sbjct: 197 gttttaactatggctactgct 177
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>gb|AY570194.1| Potamopyrgus antipodarum haplotype 13 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 431

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gttttaactatggctactgct 214
           |||||||||||||||||||||
Sbjct: 197 gttttaactatggctactgct 177
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>gb|AY570192.1| Potamopyrgus antipodarum haplotype 11 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 431

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gttttaactatggctactgct 214
           |||||||||||||||||||||
Sbjct: 197 gttttaactatggctactgct 177
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>gb|AY570191.1| Potamopyrgus antipodarum haplotype 10 cytochrome b (cytb) gene,
           partial cds; mitochondrial
          Length = 431

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 194 gttttaactatggctactgct 214
           |||||||||||||||||||||
Sbjct: 197 gttttaactatggctactgct 177
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>ref|XM_753578.1| Ustilago maydis 521 hypothetical protein (UM02524.1) partial mRNA
          Length = 6960

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 160  acatgaggccacaacacgcca 180
            |||||||||||||||||||||
Sbjct: 2766 acatgaggccacaacacgcca 2746
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>gb|AC163291.3| Mus musculus BAC clone RP23-263M4 from chromosome 15, complete sequence
          Length = 208289

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 299    tttctgtcagtgtttgtttgtttgg 323
              ||||| |||||||||||||||||||
Sbjct: 109356 tttctttcagtgtttgtttgtttgg 109332
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>gb|AC079857.5| Homo sapiens BAC clone RP11-589E1 from 4, complete sequence
          Length = 186219

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   agattcagacagaactctcaa 257
             |||||||||||||||||||||
Sbjct: 45926 agattcagacagaactctcaa 45906
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>dbj|AK081303.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130002K22 product:hypothetical protein,
           full insert sequence
          Length = 3413

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 252 tctcaagcttgctatttcctt 272
           |||||||||||||||||||||
Sbjct: 605 tctcaagcttgctatttcctt 585
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>dbj|AK009162.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310005B11 product:9030625G08RIK PROTEIN,
           full insert sequence
          Length = 1194

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 252 tctcaagcttgctatttcctt 272
           |||||||||||||||||||||
Sbjct: 583 tctcaagcttgctatttcctt 563
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>dbj|AK051198.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130015E21 product:RIKEN cDNA
           9030625G08 gene, full insert sequence
          Length = 3682

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 252 tctcaagcttgctatttcctt 272
           |||||||||||||||||||||
Sbjct: 384 tctcaagcttgctatttcctt 364
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>dbj|AK018577.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030625G08 product:RIKEN cDNA 9030625G08
           gene, full insert sequence
          Length = 1515

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 252 tctcaagcttgctatttcctt 272
           |||||||||||||||||||||
Sbjct: 584 tctcaagcttgctatttcctt 564
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>emb|BX822243.1|CNS0A7TI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB22ZD07 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1887

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 458  atcaggtccccggcagagtgatccacatgctgcatcaccaggttc 502
            ||||| || ||||| || ||||||||||||||||| | |||||||
Sbjct: 1624 atcagatcaccggctgaatgatccacatgctgcattatcaggttc 1580
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>gb|AC126943.5| Mus musculus BAC clone RP23-307F3 from chromosome 10, complete sequence
          Length = 192356

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   tctcaagcttgctatttcctt 272
             |||||||||||||||||||||
Sbjct: 56698 tctcaagcttgctatttcctt 56718
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>gb|AF234652.1|AF234652 Mesembryanthemum crystallinum protein kinase MK5 mRNA, complete cds
          Length = 1738

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 476  tgatccacatgctgcatcaccaggttctg 504
            ||||||||||||||||| || ||||||||
Sbjct: 1283 tgatccacatgctgcattacgaggttctg 1255
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>gb|AY111089.1| Zea mays CL31185_3 mRNA sequence
          Length = 574

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 476 tgatccacatgctgcatcaccaggttctg 504
           ||||||||||  |||||||||||||||||
Sbjct: 359 tgatccacattttgcatcaccaggttctg 387
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>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 267    ttccttgctgcaagcctgcag 287
              |||||||||||||||||||||
Sbjct: 335770 ttccttgctgcaagcctgcag 335790
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>emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chromosome 12, complete
             sequence
          Length = 156278

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 301   tctgtcagtgtttgtttgttt 321
             |||||||||||||||||||||
Sbjct: 23416 tctgtcagtgtttgtttgttt 23436
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>ref|NM_025780.2| Mus musculus THAP domain containing, apoptosis associated protein 2
           (Thap2), mRNA
          Length = 3413

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 252 tctcaagcttgctatttcctt 272
           |||||||||||||||||||||
Sbjct: 605 tctcaagcttgctatttcctt 585
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>ref|NM_001002980.1| Canis familiaris collagen, type VII, alpha 1 (epidermolysis bullosa,
            dystrophic, dominant and recessive) (COL7A1), mRNA
          Length = 8811

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 385  gcggtggctcagggcttcctgggc 408
            |||||||| |||||||||||||||
Sbjct: 4064 gcggtggcccagggcttcctgggc 4087
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   ctggccgaaggctcgtatgc 435
             ||||||||||||||||||||
Sbjct: 98650 ctggccgaaggctcgtatgc 98669
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 302     ctgtcagtgtttgtttgtttgggt 325
               |||| |||||||||||||||||||
Sbjct: 1233991 ctgtgagtgtttgtttgtttgggt 1233968
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>gb|AC087327.7| Trypanosoma brucei chromosome 4 clone RPCI93-3I12, complete sequence
          Length = 158030

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 302   ctgtcagtgtttgtttgtttgggt 325
             |||| |||||||||||||||||||
Sbjct: 90024 ctgtgagtgtttgtttgtttgggt 90047
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>gb|AC132441.3| Mus musculus BAC clone RP23-239J2 from chromosome 18, complete sequence
          Length = 189507

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    cttttacctacctttctagg 30
             ||||||||||||||||||||
Sbjct: 35352 cttttacctacctttctagg 35333
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>gb|BT013142.1| Lycopersicon esculentum clone 134136R, mRNA sequence
          Length = 1656

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 476  tgatccacatgctgcatcaccaggttctggaggcgaggca 515
            ||||| |||||||||||||| |  |||||||| |||||||
Sbjct: 1246 tgatcaacatgctgcatcactaaattctggagacgaggca 1207
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>gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosome 10, complete sequence
          Length = 210306

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    agagaatgagacttttgaat 133
              ||||||||||||||||||||
Sbjct: 100696 agagaatgagacttttgaat 100715
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 448    cagcagcccgatcaggtccccggc 471
              |||||||||||||||| |||||||
Sbjct: 720274 cagcagcccgatcaggaccccggc 720251
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>gb|AC123056.4| Mus musculus BAC clone RP23-182H4 from chromosome 13, complete sequence
          Length = 183076

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    gattcagacagaactctcaa 257
              ||||||||||||||||||||
Sbjct: 150768 gattcagacagaactctcaa 150787
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>gb|AC092350.4| Homo sapiens chromosome 16 clone RP11-29G3, complete sequence
          Length = 174387

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    ttctgtcagtgtttgtttgt 319
              ||||||||||||||||||||
Sbjct: 154692 ttctgtcagtgtttgtttgt 154711
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>ref|XM_661756.1| Cryptosporidium hominis TU502 60S ribosomal protein L35 (RPL35C)
           (Chro.30112) partial mRNA
          Length = 381

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 249 aactctcaagcttgctatttcctt 272
           ||||||||||||||||| ||||||
Sbjct: 108 aactctcaagcttgctaattcctt 85
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>gb|AC159648.2| Mus musculus BAC clone RP23-38A15 from chromosome 12, complete sequence
          Length = 156190

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 431   tatgccaggaggccctgcag 450
             ||||||||||||||||||||
Sbjct: 54062 tatgccaggaggccctgcag 54081
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>gb|AY183408.1| Canis familiaris type VII collagen mRNA, complete cds
          Length = 8811

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 385  gcggtggctcagggcttcctgggc 408
            |||||||| |||||||||||||||
Sbjct: 4064 gcggtggcccagggcttcctgggc 4087
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>gb|AC159645.2| Mus musculus BAC clone RP23-242E11 from chromosome 12, complete sequence
          Length = 220771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 431    tatgccaggaggccctgcag 450
              ||||||||||||||||||||
Sbjct: 159969 tatgccaggaggccctgcag 159988
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>gb|AC092627.2| Homo sapiens BAC clone RP11-271B8 from 4, complete sequence
          Length = 102899

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 299   tttctgtcagtgtttgtttgtttg 322
             ||||||| ||||||||||||||||
Sbjct: 88143 tttctgttagtgtttgtttgtttg 88166
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>dbj|AK140025.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230040O03
            product:unclassifiable, full insert sequence
          Length = 2062

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  tgtcagtgtttgtttgtttg 322
            ||||||||||||||||||||
Sbjct: 1581 tgtcagtgtttgtttgtttg 1562
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>gb|DP000032.1| Felis catus target 116 genomic scaffold
          Length = 376810

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    tcagtgtttgtttgtttggg 324
              ||||||||||||||||||||
Sbjct: 190395 tcagtgtttgtttgtttggg 190376
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>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete
            sequence
          Length = 193884

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  tgtcagtgtttgtttgtttg 322
            ||||||||||||||||||||
Sbjct: 6760 tgtcagtgtttgtttgtttg 6779
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>ref|XM_626665.1| Cryptosporidium parvum Iowa II 60S ribosomal protein L35
           (cgd3_830), partial mRNA
          Length = 381

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 249 aactctcaagcttgctatttcctt 272
           ||||||||||||||||| ||||||
Sbjct: 108 aactctcaagcttgctaattcctt 85
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>dbj|AK087928.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430001B10
           product:CDNA FLJ12787 FIS, CLONE NT2RP2001943 [Homo
           sapiens], full insert sequence
          Length = 2329

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 gattcagacagaactctcaa 257
           ||||||||||||||||||||
Sbjct: 653 gattcagacagaactctcaa 634
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 404     tgggcggtcagcctggccga 423
               ||||||||||||||||||||
Sbjct: 2656082 tgggcggtcagcctggccga 2656063
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>dbj|AB192871.1| Vargula hilgendorfii mitochondrial gene for cytochrome b, complete
           cds
          Length = 1134

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 ttttaactatggctactgct 214
           ||||||||||||||||||||
Sbjct: 365 ttttaactatggctactgct 384
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>gb|U75930.2|OPU75930 Orgyia pseudotsugata multicapsid nucleopolyhedrovirus, complete genome
          Length = 131995

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    ttgttcgaatttgccccagc 77
             ||||||||||||||||||||
Sbjct: 71298 ttgttcgaatttgccccagc 71279
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>ref|XM_345789.2| PREDICTED: Rattus norvegicus nuclear factor I/C (Nfic), mRNA
          Length = 1347

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 428 tcgtatgccaggaggccctgcagc 451
           |||||||||||| |||||||||||
Sbjct: 836 tcgtatgccaggtggccctgcagc 813
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>gb|AC055811.20| Homo sapiens chromosome 17, clone RP11-45M22, complete sequence
          Length = 143790

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    ggcctcttctgaagttttaa 200
              ||||||||||||||||||||
Sbjct: 122940 ggcctcttctgaagttttaa 122921
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>gb|AC009069.3|AC009069 Homo sapiens chromosome 16 clone RP11-314L21, complete sequence
          Length = 174873

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  ttctgtcagtgtttgtttgt 319
            ||||||||||||||||||||
Sbjct: 2323 ttctgtcagtgtttgtttgt 2342
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>dbj|AB012233.2| Rattus norvegicus mRNA for NF1-C2, complete cds
          Length = 1565

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 428 tcgtatgccaggaggccctgcagc 451
           |||||||||||| |||||||||||
Sbjct: 776 tcgtatgccaggtggccctgcagc 753
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>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete
              sequence
          Length = 221255

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    tgtcagtgtttgtttgtttg 322
              ||||||||||||||||||||
Sbjct: 133711 tgtcagtgtttgtttgtttg 133692
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>gb|AC147219.5| Mus musculus BAC clone RP23-37K18 from 18, complete sequence
          Length = 183177

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     cttttacctacctttctagg 30
              ||||||||||||||||||||
Sbjct: 170085 cttttacctacctttctagg 170066
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>gb|U62808.1|FAU62808 Flavobacterium ATCC21588 geranylgeranyl synthase (crtE), phytoene
            synthase (crtB), phytoene desaturase (crtI), lycopene
            cyclase (crtY), b-carotene hydroxylase (crtZ) genes,
            complete cds
          Length = 5188

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  ccctgcagcagcccgatcag 462
            ||||||||||||||||||||
Sbjct: 4218 ccctgcagcagcccgatcag 4237
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>gb|AC163645.5| Mus musculus BAC clone RP23-206F16 from chromosome 10, complete sequence
          Length = 212773

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    agagaatgagacttttgaat 133
              ||||||||||||||||||||
Sbjct: 202895 agagaatgagacttttgaat 202914
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>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete
              sequence
          Length = 207724

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    tgtttgtttgtttgggtcag 328
              ||||||||||||||||||||
Sbjct: 169892 tgtttgtttgtttgggtcag 169911
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>dbj|AP006698.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04O06, TM0487,
             complete sequence
          Length = 108174

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   gtgtttgtttgtttgggtca 327
             ||||||||||||||||||||
Sbjct: 40189 gtgtttgtttgtttgggtca 40208
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>emb|AL808126.10| Mouse DNA sequence from clone RP23-37B4 on chromosome 2, complete
             sequence
          Length = 94874

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 299   tttctgtcagtgtttgtttgtttg 322
             ||||| ||||||||||||||||||
Sbjct: 86403 tttctatcagtgtttgtttgtttg 86380
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>emb|AL772359.8| Mouse DNA sequence from clone RP23-305E10 on chromosome 11, complete
             sequence
          Length = 105736

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   tgtttgtttgtttgggtcag 328
             ||||||||||||||||||||
Sbjct: 41432 tgtttgtttgtttgggtcag 41413
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>emb|AJ009613.4|HSAJ9613 Homo sapiens chromosome 17 sequence from cosmid 5L05 region
            D17S842-D17S953 map 17p11.2, complete sequence
          Length = 43241

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 181  ggcctcttctgaagttttaa 200
            ||||||||||||||||||||
Sbjct: 4111 ggcctcttctgaagttttaa 4130
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>emb|AL663030.12| Mouse DNA sequence from clone RP23-84C12 on chromosome 11, complete
              sequence
          Length = 212085

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    tgtttgtttgtttgggtcag 328
              ||||||||||||||||||||
Sbjct: 126051 tgtttgtttgtttgggtcag 126070
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>gb|AC139856.12| Mus musculus chromosome 8, clone RP23-52J10, complete sequence
          Length = 212906

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    tgtcagtgtttgtttgtttg 322
              ||||||||||||||||||||
Sbjct: 184395 tgtcagtgtttgtttgtttg 184414


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,656,686
Number of Sequences: 3902068
Number of extensions: 6656686
Number of successful extensions: 513999
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 513429
Number of HSP's gapped (non-prelim): 570
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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