>TRMU_CAUCR (P58074) Probable tRNA|
           (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           (EC 2.1.1.61)
          Length = 383

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = +3

Query: 147 DELEVHGEGHRRAV--VPGQREPAPGA---VERHLLAVYHRRHQPVAPARLVVLADLSNP 311
           D LE   E  +R +  V   REP PG    ++  L  V+    + VAP +  VL D ++P
Sbjct: 303 DSLEAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDPADP 362

Query: 312 DGDLGIEQADGARGDMD 362
           D  LG     G    MD
Sbjct: 363 DRVLGGGFIAGTTRQMD 379

>FIBB_PETMA (P02678) Fibrinogen beta chain [Contains: Fibrinopeptide B]|
           (Fragments)
          Length = 477

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = -1

Query: 162 GLRARLPGLRHRQAGPGDAQGARDVPHHRRRQEGEDPDPQEG 37
           G R R P LRHR+  PG A  +RD P   R QE +     EG
Sbjct: 42  GTRVRRPPLRHRRLAPG-AVMSRDPPASPRPQEAQKAIRDEG 82

>RRBP1_HUMAN (Q9P2E9) Ribosome-binding protein 1 (Ribosome receptor protein)|
           (180 kDa ribosome receptor homolog) (ES/130-related
           protein)
          Length = 1410

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
 Frame = -1

Query: 303 TGPQVLPAEQEPPAGVGGDTXXXXXXXXXXXXXXXXXXXXRDGAPHRGLRAR-LPGLRHR 127
           T P+ +P    PP G  G+T                     +GAP++G +A   P    +
Sbjct: 172 TAPKEVPMVVVPPVGAKGNTPATGTTQGKKAEGTQNQSKKAEGAPNQGRKAEGTPNQGKK 231

Query: 126 QAG-PGDAQGARDVPHHRRRQEG 61
             G P   + A   P+  ++ EG
Sbjct: 232 TEGTPNQGKKAEGTPNQGKKAEG 254

>NIA_BEABA (P43100) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)|
          Length = 894

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/66 (34%), Positives = 32/66 (48%)
 Frame = +3

Query: 270 APARLVVLADLSNPDGDLGIEQADGARGDMDPEHGSRVVHDHVEGAVEGDHLGRNPAVVC 449
           APAR  +L  LS PD         G RG MD E+    + +H+ G  + D  GR   +VC
Sbjct: 820 APARTTLLHKLSRPDASW-----CGLRGRMDKEY----LEEHIGGFRKSD--GREMVLVC 868

Query: 450 ALSGVE 467
             + +E
Sbjct: 869 GPAALE 874

>PURL_BACSU (P12042) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 742

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 161 DFELVSRGYVIG-KLVRVTHRAHVTCRITVDA 69
           D E VS G+V   K++R+TH+  V C + VDA
Sbjct: 342 DLEAVSVGHVTDDKMLRLTHKGEVVCELPVDA 373

>THD1_ARATH (Q9ZSS6) Threonine dehydratase biosynthetic, chloroplast precursor|
           (EC 4.3.1.19) (Threonine deaminase) (TD)
          Length = 592

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 27/107 (25%), Positives = 39/107 (36%)
 Frame = +3

Query: 96  VRPVRHPDQLADDVAPGDELEVHGEGHRRAVVPGQREPAPGAVERHLLAVYHRRHQPVAP 275
           + P  HPD +A     G E+    +G   A+      P  G      +A Y +R  P   
Sbjct: 233 IPPFDHPDVIAGQGTVGMEITRQAKGPLHAIFV----PVGGGGLIAGIAAYVKRVSPEVK 288

Query: 276 ARLVVLADLSNPDGDLGIEQADGARGDMDPEHGSRVVHDHVEGAVEG 416
                          +G+E AD     +   HG RV+ D V G  +G
Sbjct: 289 I--------------IGVEPADANAMALSLHHGERVILDQVGGFADG 321

>UL06_EBV (P03213) Virion protein BBRF1|
          Length = 613

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 315 GDLGIEQADGARGDMDPEHG-SRVVHDHVEGA 407
           GD GI QA  ARGD +P+H  S+   D   GA
Sbjct: 580 GDHGIRQAPSARGDTEPDHAKSKPARDPPPGA 611

>FANCC_MOUSE (P50652) Fanconi anemia group C protein homolog (Protein FACC)|
          Length = 591

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 15/69 (21%)
 Frame = -1

Query: 417 HPQLLPQHDRVQPCFHVR-------DPCLLG-PRPP--ALFRDRH-RGWTGPQV----LP 283
           HP+ +PQ  R+QP  H+        + C  G PR P  + F   H  GW    V    L 
Sbjct: 356 HPEAIPQGHRLQPLLHISQLLREAVEDCTRGSPRNPFESWFLFVHFGGWVDLAVAELLLR 415

Query: 282 AEQEPPAGV 256
            E EPPAG+
Sbjct: 416 EEAEPPAGL 424

>YAA1_SCHPO (Q09795) Probable peptidase C22G7.01c (EC 3.4.-.-)|
          Length = 598

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -2

Query: 533 IVWGAARPYEPDVVVKSIAMDNFYAGEGTD 444
           IVWGA+RP EP  + K I  +  YAG G D
Sbjct: 148 IVWGASRPKEP--LEKLIVQEIKYAGLGVD 175

>IE63_PRVKA (Q85232) Transcriptional regulator IE63 homolog (Protein UL54)|
          Length = 361

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 14/53 (26%)
 Frame = -1

Query: 165 RGLRARLPGLRHRQAGPG--------------DAQGARDVPHHRRRQEGEDPD 49
           R +RARL  +R R+ G G                Q  R   H RRRQE + PD
Sbjct: 35  RPVRARLGAIRRRRGGRGGRAARQALRQRRRQQQQQQRQQQHQRRRQEADRPD 87

>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = -1

Query: 444 PQRGSDQDGHPQLLPQHDRVQPCFHVRDPCLLGPRPPALFRDRHRGWTGPQVLPAEQEPP 265
           PQ    Q G P  LP+ +R +      +P L+G + P   R  H G  GP   P    PP
Sbjct: 161 PQGPKGQKGEPYALPKEERDRYRGEPGEPGLVGFQGPP-GRPGHVGQMGPVGAPGRPGPP 219

Query: 264 AGVG 253
              G
Sbjct: 220 GPPG 223

>TIM54_NEUCR (Q9C0Q7) Mitochondrial import inner membrane translocase subunit|
           tim-54
          Length = 425

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
 Frame = -1

Query: 444 PQRGSDQDGHPQLLPQHDRVQPCFHVRDPCLLGPRP-PALFRDRHRGWTGPQVLPAEQEP 268
           P R   +D   ++  Q   ++    VR   ++G        R  H GW GP V PAE  P
Sbjct: 136 PNREPTKDELIEIYRQQRGIKDYEGVRGDVVIGRHTWKEYLRGLHEGWLGPLVAPAEPAP 195

Query: 267 ------PAGVGGDT 244
                 PA   G T
Sbjct: 196 LPPTPAPAAAEGST 209

>PROB_PROAC (Q6A9H7) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 391

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 26/90 (28%), Positives = 36/90 (40%)
 Frame = +3

Query: 210 APGAVERHLLAVYHRRHQPVAPARLVVLADLSNPDGDLGIEQADGARGDMDPEHGSRVVH 389
           AP  +    +  Y R      P RL+ LAD + P G + I+  DGA   +   H S +  
Sbjct: 244 APDVLAGVPVGTYFRPLATRRPRRLLWLADAATPQGQIVID--DGAVEALTQRHSSLLAV 301

Query: 390 DHVEGAVEGDHLGRNPAVVCALSGVEVIHG 479
                 V GD    +P  + A  G  V  G
Sbjct: 302 GVTR--VHGDFQAGDPVTILASDGRVVGRG 329

>NOSD_PSEST (P19843) Copper-binding periplasmic protein precursor|
          Length = 436

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 312 DGDLGIEQADGARG-DMDPEHGSRVVHDHVEGAVEGDHL 425
           DGD G+   D   G  +    G+RV+H+HV  A +G ++
Sbjct: 148 DGDAGVRSQDRGNGIHLFAVSGARVLHNHVRNARDGIYI 186

>ENV_HV1S3 (P19549) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 852

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = -2

Query: 506 EPDVVVKSIAMDNFYAGEGTDHSGVPTKMVTLNCSLNMIVYNPASMFGIHVSSGPVRLLY 327
           E +VV++S   DNF        +   T +V LN S+ +    P +     ++SGP ++LY
Sbjct: 268 EEEVVIRS---DNFT-------NNAKTILVQLNVSVEINCTRPNNNRRRRITSGPGKVLY 317

Query: 326 SEIAIGVGQVRKYY 285
           +   I +G +RK Y
Sbjct: 318 TTGEI-IGDIRKAY 330

>XERC_BRAJA (Q89X68) Tyrosine recombinase xerC|
          Length = 321

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +1

Query: 304 PTPMA----ISE*SRRTGPE-ETWIPNMEAGLYTIMLREQLRVTILVGTPLWSVPSPA*K 468
           P PMA    +++   R G E ETWI   +A +  ++    LR++  +G     VP P   
Sbjct: 132 PLPMASAKRLADADERAGEERETWILARDAAVMALLYGSGLRISEALGLKRREVPKPG-- 189

Query: 469 LSMAMLLTTTSGS*GRAAP 525
               +L+ T  G+  R  P
Sbjct: 190 -EGDVLVVTGKGNKTRMVP 207

>TRPA1_DROME (Q7Z020) Transient receptor potential cation channel subfamily A|
           member 1 (Ankyrin-like with transmembrane domains
           protein 1) (dANKTM1)
          Length = 1197

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
 Frame = +3

Query: 300 LSNPDGDLGIEQADGARGDMDPEH-GSRVVHDHV------EGAV-EGDHLGRNPAVVCAL 455
           L +  G   I ++DGA   M P H  S+  H  V       GA+   DH GRNP  + A+
Sbjct: 497 LDSEKGSFIINESDGA--GMTPLHISSQQGHTRVVQLLLNRGALLHRDHTGRNPLQLAAM 554

Query: 456 SG----VEVIH 476
           SG    +E++H
Sbjct: 555 SGYTETIELLH 565

>CSD_PSEAE (Q9HXX3) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 401

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
 Frame = +3

Query: 141 PGDELEVHGEGHRRAVVPGQREPAPGAV--------ERHLLAVYHRRHQPVAPARLVVLA 296
           PGDEL V    H   ++P Q+      +        ER ++ +   RH      RL+ ++
Sbjct: 109 PGDELLVSALEHHANLLPWQQLALRRGLVLRVLPLDERGVIDLEQARHIIGERTRLLAIS 168

Query: 297 DLSNPDGDLGIEQADGARGDMDPEHGSRVVHDHVEGAVEGDH 422
            LSN    LG  Q       +  E G+  + D  +G+V G H
Sbjct: 169 QLSNV---LGTWQPVVELIQLARERGAWTLVDGAQGSVHGRH 207

>FRM4A_MOUSE (Q8BIE6) FERM domain-containing protein 4A|
          Length = 1020

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 174 APHRGLRARLPGLRHRQAGPGDAQGARDVPHHR 76
           +PH+GL  R P   +R   P   +G R + +HR
Sbjct: 552 SPHKGLPPRPPSSHNRPPPPQSLEGLRQLHYHR 584


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,107,802
Number of Sequences: 219361
Number of extensions: 1660623
Number of successful extensions: 5916
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5906
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)