ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 291 1e-75
2ref|XM_471170.1| Oryza sativa (japonica cultivar-group), predic... 92 3e-15
3emb|Z83832.1|ASSGT Avena sativa mRNA for UDP-glucose:sterol gluc... 92 3e-15
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
5dbj|AK064088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 3e-15
6emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4,... 92 3e-15
7emb|AL663011.2|OSJN00215 Oryza sativa genomic DNA, chromosome 4,... 92 3e-15
8gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ... 46 0.14
9gb|AC113113.18| Mus musculus chromosome 16, clone RP23-334P10, c... 44 0.55
10dbj|AK012834.1| Mus musculus 10, 11 days embryo whole body cDNA,... 44 0.55
11gb|AC007956.5|AC007956 Homo sapiens chromosome 14 clones CTD-321... 44 0.55
12emb|CR396582.13| Zebrafish DNA sequence from clone DKEY-283B1 in... 42 2.2
13ref|XM_644429.1| Entamoeba histolytica HM-1:IMSS exonuclease (29... 42 2.2
14emb|X56793.1|SERFBB S.enterica (group B) rfb gene cluster 42 2.2
15gb|AE008792.1| Salmonella typhimurium LT2, section 96 of 220 of ... 42 2.2
16gb|AC010016.6| Drosophila melanogaster 3L BAC RP98-10M10 (Roswel... 42 2.2
17gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswel... 42 2.2
18gb|AC068274.5| Homo sapiens BAC clone RP11-119B15 from 2, comple... 42 2.2
19gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37... 42 2.2
20gb|U35435.1|SEU35435 Salmonella enterica galactosyl-1-phosphate ... 42 2.2
21gb|U35434.1|SEU35434 Salmonella enterica galactosyl-1-phosphate ... 42 2.2
22gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosom... 42 2.2
23gb|AC099637.7| Mus musculus chromosome 1, clone RP24-257C20, com... 40 8.6
24gb|AC103612.5| Mus musculus chromosome 5, clone RP24-455E13, com... 40 8.6
25gb|AC124473.2| Mus musculus BAC clone RP24-86K23 from chromosome... 40 8.6
26gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome... 40 8.6
27emb|AL513166.7| Human DNA sequence from clone RP11-261J10 on chr... 40 8.6
28emb|AL392107.17| Human DNA sequence from clone RP11-114F7 on chr... 40 8.6
29gb|AC129980.6| Homo sapiens chromosome 15, clone CTD-2529M12, co... 40 8.6
30emb|AL732462.20| Mouse DNA sequence from clone RP23-132J5 on chr... 40 8.6
31gb|AC151818.2| Xenopus tropicalis clone ISB1-133E21, complete se... 40 8.6
32emb|BX901964.13| Zebrafish DNA sequence from clone DKEYP-20A7 in... 40 8.6
33gb|AC104420.2| Homo sapiens chromosome 15, clone RP11-945A13, co... 40 8.6
34gb|AF130164.1|AF130164 Ligustrum vulgare NADH dehydrogenase subu... 40 8.6
35gb|AF130161.1|AF130161 Nyctanthes arbor-tristis NADH dehydrogena... 40 8.6
36gb|AC079112.4| Homo sapiens BAC clone RP11-67K11 from 2, complet... 40 8.6
37dbj|AB084515.1| Candida parapsilosis cpr-c1 gene for conjugated ... 40 8.6
38emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in... 40 8.6
39gb|AC007103.4|AC007103 Homo sapiens chromosome 4 clone C0190D22 ... 40 8.6
40emb|AL929135.9| Zebrafish DNA sequence from clone CH211-125A22, ... 40 8.6
41gb|AF027272.1|AF027272 Tetrachondra patagonica NADH dehydrogenas... 40 8.6
42emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chrom... 40 8.6
43emb|AJ011986.1|PPR011986 Polypremum procumbens chloroplast ndhF ... 40 8.6

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  291 bits (147), Expect = 1e-75
 Identities = 163/167 (97%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                          
Query: 22     atggtccagnaacacacaagtttgtatctacatgcacaaagggcaagctccaaaacactc 81
              ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 135156 atggtccag-aacacacaagtttgtatctacatgcacaaagtgcaagctccaaaacactc 135214

                                                                          
Query: 82     gaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttggtccataa 141
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135215 gaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttggtccataa 135274

                                                             
Query: 142    acgctagagagtcatcatgtccatgtgcatcaataagttgagtacct 188
              ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 135275 acgctggagagtcatcatgtccatgtgcatcaataggttgagtacct 135321



 Score =  291 bits (147), Expect = 1e-75
 Identities = 163/167 (97%), Gaps = 1/167 (0%)
 Strand = Plus / Plus

                                                                         
Query: 22    atggtccagnaacacacaagtttgtatctacatgcacaaagggcaagctccaaaacactc 81
             ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 95443 atggtccag-aacacacaagtttgtatctacatgcacaaagtgcaagctccaaaacactc 95501

                                                                         
Query: 82    gaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttggtccataa 141
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95502 gaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttggtccataa 95561

                                                            
Query: 142   acgctagagagtcatcatgtccatgtgcatcaataagttgagtacct 188
             ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 95562 acgctggagagtcatcatgtccatgtgcatcaataggttgagtacct 95608



to top

>ref|XM_471170.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1830

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 124/150 (82%)
 Strand = Plus / Minus

                                                                       
Query: 199 ggaaatcttatcatccaataactgtttagcaggatcatcagctgggttactttgtttgcg 258
           |||||| |||||||| ||||||||||||| ||||||||||||||| ||  |||||   ||
Sbjct: 306 ggaaattttatcatcaaataactgtttagtaggatcatcagctggattgttttgtcgacg 247

                                                                       
Query: 259 cctctcagtttttgacctttccagatttgatggacccgtagtttcagtagttatctcagt 318
           |||||| ||| |||| ||||||||||| |||||||| | ||||||| | ||||| |||  
Sbjct: 246 cctctctgttcttgatctttccagattagatggaccagcagtttcattggttatttcaac 187

                                         
Query: 319 atcctttatcacccccggcatagtgcttga 348
           ||  || ||| | || ||||||||||||||
Sbjct: 186 attattaatcccacctggcatagtgcttga 157



to top

>emb|Z83832.1|ASSGT Avena sativa mRNA for UDP-glucose:sterol glucosyltransferase
          Length = 2317

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 49/50 (98%)
 Strand = Plus / Minus

                                                             
Query: 187 ctttttccttatggaaatcttatcatccaataactgtttagcaggatcat 236
           ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ctttttccttacggaaatcttatcatccaataactgtttagcaggatcat 407



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Minus

                                                                       
Query: 260 ctctcagtttttgacctttccagatttgatggacccgtagtttcagtagttatctcagta 319
           ||||| ||||| |||||||| | ||| || || || |||||||||||| |||| |||| |
Sbjct: 392 ctctcggttttcgacctttcaaaattcgacggtcctgtagtttcagtaattatttcagca 333

                                                                
Query: 320 tcctttatcacccccggcatagtgcttgacctatggaggtttccgttatctgc 372
           ||||| ||||| || |||||||||||||| ||||||||||| ||||| |||||
Sbjct: 332 tccttgatcactcctggcatagtgcttgatctatggaggttcccgttgtctgc 280



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 124/150 (82%)
 Strand = Plus / Plus

                                                                           
Query: 199     ggaaatcttatcatccaataactgtttagcaggatcatcagctgggttactttgtttgcg 258
               |||||| |||||||| ||||||||||||| ||||||||||||||| ||  |||||   ||
Sbjct: 1983795 ggaaattttatcatcaaataactgtttagtaggatcatcagctggattgttttgtcgacg 1983854

                                                                           
Query: 259     cctctcagtttttgacctttccagatttgatggacccgtagtttcagtagttatctcagt 318
               |||||| ||| |||| ||||||||||| |||||||| | ||||||| | ||||| |||  
Sbjct: 1983855 cctctctgttcttgatctttccagattagatggaccagcagtttcattggttatttcaac 1983914

                                             
Query: 319     atcctttatcacccccggcatagtgcttga 348
               ||  || ||| | || ||||||||||||||
Sbjct: 1983915 attattaatcccacctggcatagtgcttga 1983944



to top

>dbj|AK064088.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C05, full
           insert sequence
          Length = 2363

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 124/150 (82%)
 Strand = Plus / Minus

                                                                       
Query: 199 ggaaatcttatcatccaataactgtttagcaggatcatcagctgggttactttgtttgcg 258
           |||||| |||||||| ||||||||||||| ||||||||||||||| ||  |||||   ||
Sbjct: 451 ggaaattttatcatcaaataactgtttagtaggatcatcagctggattgttttgtcgacg 392

                                                                       
Query: 259 cctctcagtttttgacctttccagatttgatggacccgtagtttcagtagttatctcagt 318
           |||||| ||| |||| ||||||||||| |||||||| | ||||||| | ||||| |||  
Sbjct: 391 cctctctgttcttgatctttccagattagatggaccagcagtttcattggttatttcaac 332

                                         
Query: 319 atcctttatcacccccggcatagtgcttga 348
           ||  || ||| | || ||||||||||||||
Sbjct: 331 attattaatcccacctggcatagtgcttga 302



to top

>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06,
           complete sequence
          Length = 126447

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 124/150 (82%)
 Strand = Plus / Plus

                                                                       
Query: 199 ggaaatcttatcatccaataactgtttagcaggatcatcagctgggttactttgtttgcg 258
           |||||| |||||||| ||||||||||||| ||||||||||||||| ||  |||||   ||
Sbjct: 455 ggaaattttatcatcaaataactgtttagtaggatcatcagctggattgttttgtcgacg 514

                                                                       
Query: 259 cctctcagtttttgacctttccagatttgatggacccgtagtttcagtagttatctcagt 318
           |||||| ||| |||| ||||||||||| |||||||| | ||||||| | ||||| |||  
Sbjct: 515 cctctctgttcttgatctttccagattagatggaccagcagtttcattggttatttcaac 574

                                         
Query: 319 atcctttatcacccccggcatagtgcttga 348
           ||  || ||| | || ||||||||||||||
Sbjct: 575 attattaatcccacctggcatagtgcttga 604



to top

>emb|AL663011.2|OSJN00215 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0080H08,
              complete sequence
          Length = 138127

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 124/150 (82%)
 Strand = Plus / Plus

                                                                          
Query: 199    ggaaatcttatcatccaataactgtttagcaggatcatcagctgggttactttgtttgcg 258
              |||||| |||||||| ||||||||||||| ||||||||||||||| ||  |||||   ||
Sbjct: 127032 ggaaattttatcatcaaataactgtttagtaggatcatcagctggattgttttgtcgacg 127091

                                                                          
Query: 259    cctctcagtttttgacctttccagatttgatggacccgtagtttcagtagttatctcagt 318
              |||||| ||| |||| ||||||||||| |||||||| | ||||||| | ||||| |||  
Sbjct: 127092 cctctctgttcttgatctttccagattagatggaccagcagtttcattggttatttcaac 127151

                                            
Query: 319    atcctttatcacccccggcatagtgcttga 348
              ||  || ||| | || ||||||||||||||
Sbjct: 127152 attattaatcccacctggcatagtgcttga 127181



to top

>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 170    atcaataagttgagtaccttttt 192
              |||||||||||||||||||||||
Sbjct: 814285 atcaataagttgagtaccttttt 814263



to top

>gb|AC113113.18| Mus musculus chromosome 16, clone RP23-334P10, complete sequence
          Length = 216380

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 484    aaaacaactgaacaattttctt 505
              ||||||||||||||||||||||
Sbjct: 159011 aaaacaactgaacaattttctt 159032



to top

>dbj|AK012834.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810028C22 product:poliovirus
           receptor-related 3, full insert sequence
          Length = 1184

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 484 aaaacaactgaacaattttctt 505
           ||||||||||||||||||||||
Sbjct: 753 aaaacaactgaacaattttctt 732



to top

>gb|AC007956.5|AC007956 Homo sapiens chromosome 14 clones CTD-3211F8 and RP11-173A8 containing
             KIAA0317 gene, complete cds; and unknown gene, complete
             sequence
          Length = 233738

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 391   tgttgaattaaaaggaaatgat 412
             ||||||||||||||||||||||
Sbjct: 55100 tgttgaattaaaaggaaatgat 55079



to top

>emb|CR396582.13| Zebrafish DNA sequence from clone DKEY-283B1 in linkage group 3, complete
              sequence
          Length = 154857

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 399    taaaaggaaatgataacatttatac 423
              |||||||||||||| ||||||||||
Sbjct: 152812 taaaaggaaatgatgacatttatac 152788



to top

>ref|XM_644429.1| Entamoeba histolytica HM-1:IMSS exonuclease (293.t00010)  partial
            mRNA
          Length = 1887

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 149  agagtcatcatgtccatgtgcatcaataa 177
            |||| |||| |||||||||||||||||||
Sbjct: 1563 agagacatcttgtccatgtgcatcaataa 1535



to top

>emb|X56793.1|SERFBB S.enterica (group B) rfb gene cluster
          Length = 22080

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 311   atctcagtatcctttatcacc 331
             |||||||||||||||||||||
Sbjct: 20912 atctcagtatcctttatcacc 20892



to top

>gb|AE008792.1| Salmonella typhimurium LT2, section 96 of 220 of the complete genome
          Length = 22043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 311  atctcagtatcctttatcacc 331
            |||||||||||||||||||||
Sbjct: 5005 atctcagtatcctttatcacc 5025



to top

>gb|AC010016.6| Drosophila melanogaster 3L BAC RP98-10M10 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 174616

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    caaaacactcgaaacaccaaa 92
             |||||||||||||||||||||
Sbjct: 16971 caaaacactcgaaacaccaaa 16991



to top

>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170356

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     caaaacactcgaaacaccaaa 92
              |||||||||||||||||||||
Sbjct: 135455 caaaacactcgaaacaccaaa 135475



to top

>gb|AC068274.5| Homo sapiens BAC clone RP11-119B15 from 2, complete sequence
          Length = 118955

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 438   tatcacaagataaatagaaga 458
             |||||||||||||||||||||
Sbjct: 12832 tatcacaagataaatagaaga 12812



to top

>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete
              sequence
          Length = 244140

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 72     caaaacactcgaaacaccaaa 92
              |||||||||||||||||||||
Sbjct: 146740 caaaacactcgaaacaccaaa 146760



to top

>gb|U35435.1|SEU35435 Salmonella enterica galactosyl-1-phosphate transferase
           (rfbP4452(T-)) gene, complete cds
          Length = 1682

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 311 atctcagtatcctttatcacc 331
           |||||||||||||||||||||
Sbjct: 847 atctcagtatcctttatcacc 827



to top

>gb|U35434.1|SEU35434 Salmonella enterica galactosyl-1-phosphate transferase
           (rfbP4451(T-)) gene, complete cds
          Length = 1681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 311 atctcagtatcctttatcacc 331
           |||||||||||||||||||||
Sbjct: 846 atctcagtatcctttatcacc 826



to top

>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete
              sequence
          Length = 243969

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 399    taaaaggaaatgataacattt 419
              |||||||||||||||||||||
Sbjct: 211827 taaaaggaaatgataacattt 211847



to top

>gb|AC099637.7| Mus musculus chromosome 1, clone RP24-257C20, complete sequence
          Length = 169573

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    aaatgataacatttatactt 425
              ||||||||||||||||||||
Sbjct: 114464 aaatgataacatttatactt 114445



to top

>gb|AC103612.5| Mus musculus chromosome 5, clone RP24-455E13, complete sequence
          Length = 152420

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 441   cacaagataaatagaagaaa 460
             ||||||||||||||||||||
Sbjct: 92175 cacaagataaatagaagaaa 92194



to top

>gb|AC124473.2| Mus musculus BAC clone RP24-86K23 from chromosome 3, complete sequence
          Length = 185436

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   tccttatggaaatcttatca 211
             ||||||||||||||||||||
Sbjct: 69280 tccttatggaaatcttatca 69261



to top

>gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome 3, complete sequence
          Length = 149451

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    tccttatggaaatcttatca 211
              ||||||||||||||||||||
Sbjct: 135599 tccttatggaaatcttatca 135580



to top

>emb|AL513166.7| Human DNA sequence from clone RP11-261J10 on chromosome 1, complete
             sequence
          Length = 170817

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 396   aattaaaaggaaatgataac 415
             ||||||||||||||||||||
Sbjct: 41331 aattaaaaggaaatgataac 41312



to top

>emb|AL392107.17| Human DNA sequence from clone RP11-114F7 on chromosome 10 Contains the
             3' end of the ABCC2 gene for ATP-binding cassette
             sub-family C (CFTR/MRP) member 2, gene KIAA1010 and two
             CpG islands, complete sequence
          Length = 95018

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   tcagtttttgacctttccag 282
             ||||||||||||||||||||
Sbjct: 58147 tcagtttttgacctttccag 58166



to top

>gb|AC129980.6| Homo sapiens chromosome 15, clone CTD-2529M12, complete sequence
          Length = 236391

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 578   cagaaaaagttcagaaacat 597
             ||||||||||||||||||||
Sbjct: 79802 cagaaaaagttcagaaacat 79783



to top

>emb|AL732462.20| Mouse DNA sequence from clone RP23-132J5 on chromosome 1, complete
             sequence
          Length = 91356

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   aaatgataacatttatactt 425
             ||||||||||||||||||||
Sbjct: 80645 aaatgataacatttatactt 80626



to top

>gb|AC151818.2| Xenopus tropicalis clone ISB1-133E21, complete sequence
          Length = 96546

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   aataactgtttagcaggatc 234
             ||||||||||||||||||||
Sbjct: 59253 aataactgtttagcaggatc 59272



to top

>emb|BX901964.13| Zebrafish DNA sequence from clone DKEYP-20A7 in linkage group 24,
             complete sequence
          Length = 82377

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 444   aagataaatagaagaaactg 463
             ||||||||||||||||||||
Sbjct: 20978 aagataaatagaagaaactg 20959



to top

>gb|AC104420.2| Homo sapiens chromosome 15, clone RP11-945A13, complete sequence
          Length = 178756

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 578  cagaaaaagttcagaaacat 597
            ||||||||||||||||||||
Sbjct: 7160 cagaaaaagttcagaaacat 7179



to top

>gb|AF130164.1|AF130164 Ligustrum vulgare NADH dehydrogenase subunit F (ndhF) gene, complete
            cds; chloroplast gene for chloroplast product
          Length = 2217

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  cacaagataaatagaagaaa 460
            ||||||||||||||||||||
Sbjct: 2176 cacaagataaatagaagaaa 2157



to top

>gb|AF130161.1|AF130161 Nyctanthes arbor-tristis NADH dehydrogenase subunit F (ndhF) gene,
            complete cds; chloroplast gene for chloroplast product
          Length = 2223

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  cacaagataaatagaagaaa 460
            ||||||||||||||||||||
Sbjct: 2176 cacaagataaatagaagaaa 2157



to top

>gb|AC079112.4| Homo sapiens BAC clone RP11-67K11 from 2, complete sequence
          Length = 155888

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 418    ttatactttccaagtcacat 437
              ||||||||||||||||||||
Sbjct: 106867 ttatactttccaagtcacat 106886



to top

>dbj|AB084515.1| Candida parapsilosis cpr-c1 gene for conjugated polyketone
           reductase C1, complete cds
          Length = 1480

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  aaaacactcgaaacaccaaa 92
           ||||||||||||||||||||
Sbjct: 633 aaaacactcgaaacaccaaa 652



to top

>emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in linkage group 22,
             complete sequence
          Length = 189327

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   gacttgaatgttgaattaaa 402
             ||||||||||||||||||||
Sbjct: 45012 gacttgaatgttgaattaaa 44993



to top

>gb|AC007103.4|AC007103 Homo sapiens chromosome 4 clone C0190D22 map 4p16, complete sequence
          Length = 181571

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 400    aaaaggaaatgataacatttatac 423
              |||||||||||| |||||||||||
Sbjct: 101657 aaaaggaaatgaaaacatttatac 101634



to top

>emb|AL929135.9| Zebrafish DNA sequence from clone CH211-125A22, complete sequence
          Length = 167531

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   gacttgaatgttgaattaaa 402
             ||||||||||||||||||||
Sbjct: 98911 gacttgaatgttgaattaaa 98930



to top

>gb|AF027272.1|AF027272 Tetrachondra patagonica NADH dehydrogenase (ndhF) gene, chloroplast
            gene encoding chloroplast protein, partial cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  cacaagataaatagaagaaa 460
            ||||||||||||||||||||
Sbjct: 2197 cacaagataaatagaagaaa 2178



to top

>emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chromosome X, complete
             sequence
          Length = 246587

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 390   atgttgaattaaaaggaaatgataacat 417
             |||||||||||||  |||||||||||||
Sbjct: 87887 atgttgaattaaatagaaatgataacat 87914



to top

>emb|AJ011986.1|PPR011986 Polypremum procumbens chloroplast ndhF gene, partial
          Length = 2211

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 441  cacaagataaatagaagaaa 460
            ||||||||||||||||||||
Sbjct: 2194 cacaagataaatagaagaaa 2175


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,614,092
Number of Sequences: 3902068
Number of extensions: 5614092
Number of successful extensions: 107713
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107594
Number of HSP's gapped (non-prelim): 119
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top