ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26l21 |
|---|---|
| Clone Library Name | barley_pub |
>SAHH2_MOUSE (Q80SW1) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (IP3R-binding protein released with inositol 1,4,5-trisphosphate) Length = 530 Score = 32.7 bits (73), Expect = 0.59 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +1 Query: 172 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 315 AA A +A W G +WW C DGWQ DG LT +++++ Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>SAHH2_HUMAN (O43865) Putative adenosylhomocysteinase 2 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (DC-expressed AHCY-like molecule) Length = 530 Score = 32.7 bits (73), Expect = 0.59 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +1 Query: 172 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 315 AA A +A W G +WW C DGWQ DG LT +++++ Sbjct: 188 AALAEAGVAVFAWKGESEDDFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKK 240
>CBIJ_METTH (O27083) Probable cobalt-precorrin-6A reductase (EC 1.3.1.-)| Length = 302 Score = 32.3 bits (72), Expect = 0.77 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 14/81 (17%) Frame = +1 Query: 301 FLWRR-ALSPGIS*VRRKGSFR-----ACHVSLGP----RGTGRLTGSPWALVVAFRST- 447 +LWRR ++PG V+RKGS R + V G R RL+G PW V A +T Sbjct: 13 YLWRRKTMNPGDKGVKRKGSDRQREKMSVIVMAGTEDARRIISRLSGMPWVEVTATATTE 72 Query: 448 ---NLSEGMIGARFVVEDIDS 501 +L+E +R V +DS Sbjct: 73 HGSDLAEKSGASRTVTGALDS 93
>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1| Length = 1319 Score = 32.3 bits (72), Expect = 0.77 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 3/86 (3%) Frame = +3 Query: 261 EGRASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLPVGSGSGLQ 440 +G A G +D P +P A G P G S GS+ GPP+ G G+ L Sbjct: 865 DGAAVAGNPGSDYFPGGTAPGAPGP-GGPSGTSSS-----GSKASGPPNPPAQGDGTSLS 918 Query: 441 VH---KPVXRHDRRPVCGGGHRQLGQ 509 + + +D +PV GGG R G+ Sbjct: 919 PNYTLESTSGNDGKPVSGGGGRGRGR 944
>CSW_DROSI (Q8ISC9) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| (Fragment) Length = 555 Score = 31.6 bits (70), Expect = 1.3 Identities = 23/60 (38%), Positives = 28/60 (46%) Frame = +1 Query: 28 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKR*KRDTNLAATARKEIAGLL 207 R S S SK +R SSA SP + GPG +G S TNL + +AGLL Sbjct: 66 RKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCLAGLL 125
>MMP9_RABIT (P41246) Matrix metalloproteinase-9 precursor (EC 3.4.24.35)| (MMP-9) (92 kDa type IV collagenase) (92 kDa gelatinase) (Gelatinase B) (GELB) Length = 707 Score = 31.2 bits (69), Expect = 1.7 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Frame = -3 Query: 505 PSCRCPPPQ-TGRRSCLXTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAP 338 P+ P PQ T + T T RP PT SP G P G G P +PS AP Sbjct: 452 PATTTPEPQPTAPPTACPTWPATVRPSEHPTTSPTGAP---SAGPTGPPTASPSAAP 505
>VPRA_DENPO (P25687) Intestinal toxin 1 (Mamba intestinal toxin 1) (MIT 1)| (MIT1) (Venom protein A) Length = 81 Score = 30.8 bits (68), Expect = 2.2 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +2 Query: 311 GEPSRPASHRCAGRGRFGHATCPWVPEARAASRAPR 418 GE PASH+ G+ H TCP P +P+ Sbjct: 38 GEDCHPASHKIPFSGQRMHHTCPCAPNLACVQTSPK 73
>TCF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-responsive| element-binding protein) (SPRE-binding protein) (Nuclear factor SPBP) Length = 1983 Score = 30.8 bits (68), Expect = 2.2 Identities = 20/59 (33%), Positives = 25/59 (42%) Frame = -3 Query: 436 RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 260 +PLP+ TG P G P R P T PS A + R SSA + + PS Sbjct: 205 QPLPQTTGQPASGSSHLQPMQR--PSTLPSSAGYQLRVGQFGQHYQSSASSSSSSSFPS 261
>RAD52_EMENI (Q96UP6) DNA repair and recombination protein radC (RAD52 homolog)| Length = 582 Score = 30.4 bits (67), Expect = 2.9 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = -1 Query: 441 PEGHYQSPRGAREAARASGTQGHVACPKRP-LPAHL*DAGREGSPPKEARQLRTIPP 274 P H P+ A A+ASG Q HV P +P P +L AGR+ P +A R PP Sbjct: 271 PNAHLNLPKHAL-GAQASGNQ-HVVTPSKPERPMNLAPAGRQ--IPNQALNNRPFPP 323
>GRB10_MOUSE (Q60760) Growth factor receptor-bound protein 10 (GRB10 adaptor| protein) Length = 621 Score = 30.4 bits (67), Expect = 2.9 Identities = 17/60 (28%), Positives = 24/60 (40%) Frame = +2 Query: 317 PSRPASHRCAGRGRFGHATCPWVPEARAASRAPRGLW*WPSGPQTCXKA*SAPGLWWRTS 496 PS+P + C GR W+P R +W W P + PGLW +T+ Sbjct: 109 PSQPPAKHC-GRCE------KWIPGENTRGNGKRKIWRWQFPPGFQLSKLTRPGLWTKTT 161
>K1949_MOUSE (Q8BQ30) Protein KIAA1949 homolog| Length = 594 Score = 30.4 bits (67), Expect = 2.9 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -1 Query: 498 VDVLHHKPGADHAFXQVCGPEGHYQSPRGAREAARASG----TQGHVACPKRPLPAHL*D 331 +D KP + + GP G +E A A Q ++ PLP Sbjct: 330 IDTQTQKPDPPASSEKHPGPSGMEAEEEAEKEEAEAQSRPLRAQQNLCSGPSPLPPE--H 387 Query: 330 AGREGSPPKEARQLRTIPPTPALL 259 +G EGS +E PPTPA L Sbjct: 388 SGTEGSRQQEEEAAEPRPPTPAPL 411
>IP3KC_HUMAN (Q96DU7) Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol| 1,4,5-trisphosphate 3-kinase C) (InsP 3-kinase C) (IP3K-C) Length = 683 Score = 30.4 bits (67), Expect = 2.9 Identities = 22/56 (39%), Positives = 25/56 (44%) Frame = +3 Query: 267 RASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLPVGSGSG 434 R S+ + A LP AR + AP G G R PG QR GP G P G G Sbjct: 7 RGSLNEAEAGALPAA----ARMGLEAPRG---GRRRQPGQQRPGPGAGAPAGRPEG 55
>RECO_GEOSL (Q74FM9) DNA repair protein recO (Recombination protein O)| Length = 243 Score = 30.4 bits (67), Expect = 2.9 Identities = 26/75 (34%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Frame = +2 Query: 188 RRSPDYCXXXXXXXVDDAKRQMDGRRAGVGGMVLS*RASFGGEPSRPAS----HRCAGRG 355 R S D C DA RRAG G VL G P + HRC G G Sbjct: 147 RLSLDACAACGVEFPADA-----ARRAGAAGTVLCTGCGRYGAPLSAETVRLLHRCLGTG 201 Query: 356 RFGHATCPWVPEARA 400 RFG P P A Sbjct: 202 RFGAIVFPPEPLGEA 216
>CSW_DROME (P29349) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)| Length = 845 Score = 30.0 bits (66), Expect = 3.8 Identities = 22/60 (36%), Positives = 27/60 (45%) Frame = +1 Query: 28 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQHKR*KRDTNLAATARKEIAGLL 207 R S S SK +R SSA SP + GPG +G S TNL + + GLL Sbjct: 356 RKSDSLSKHKRSESSASSSPSSGSGSGPGSSGTSGVSSVNGPGTPTNLTSGTAGCLVGLL 415
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 30.0 bits (66), Expect = 3.8 Identities = 22/71 (30%), Positives = 30/71 (42%) Frame = -3 Query: 490 PPPQTGRRSCLXTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLS 311 PPP + L G T P +PT G P L P T PE++ P + G + Sbjct: 627 PPPLPPSQPPLSQGPATQAPSAQPTP---GEPLLAPPTTELKPESSNPNNPNPSSSAGSN 683 Query: 310 SKGSSSAEDHP 278 SS+ D+P Sbjct: 684 PPPKSSSSDNP 694
>CLK1_MOUSE (P22518) Dual specificity protein kinase CLK1 (EC 2.7.12.1)| (CDC-like kinase 1) (Protein kinase STY) Length = 483 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 28 RPSFSHSKAQRKHSSALHSPRCNAKRGPGETGFYFQSQ 141 R S SH + +R HSSA RC +Y +S+ Sbjct: 23 RSSSSHKRKKRSHSSAREQKRCRYDHSKTTDSYYLESR 60
>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)| Length = 726 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 382 PGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 260 P + P + PSG P R + S GSSS+ +D+ S Sbjct: 685 PARKEKPGSAPSGGPSRLSSSSSSESGSSSSSGSSSDSSDS 725
>EBNA1_EBV (P03211) Epstein-Barr nuclear antigen 1 (EBV nuclear antigen 1)| (EBNA-1) Length = 641 Score = 29.6 bits (65), Expect = 5.0 Identities = 18/42 (42%), Positives = 20/42 (47%) Frame = +3 Query: 363 GMPRVPGSQRHGPPHGLPVGSGSGLQVHKPVXRHDRRPVCGG 488 G R G R G G P GSGSG + V R +RP C G Sbjct: 40 GRGRGRGRGRGGGRPGAPGGSGSGPRHRDGVRRPQKRPSCIG 81
>URB1_USTMA (P40349) Siderophore biosynthesis regulatory protein URBS1| Length = 950 Score = 29.6 bits (65), Expect = 5.0 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = -3 Query: 421 PTGSP*GGPCLWDPGTR----GMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPSA 257 PTGS G P GTR + + P AP R +A S+ SSS +D PSA Sbjct: 862 PTGSAQGSPGADARGTRSGHDSIKQEAPDAAPRRSKA--FSNSSSSSEKDELESPPPSA 918
>SYK_BACCR (Q81J70) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 499 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +1 Query: 1 NNTTDIYIMRPSFSHSKAQRKHSSALHSPRCNAKRGPGETGF 126 N+TTD+ + FS + + K + + R KRG G+ GF Sbjct: 39 NSTTDLVSLYGEFSKEELEEKEIAVSIAGRIMTKRGKGKAGF 80
>SAHH3_HUMAN (Q96HN2) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 611 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +1 Query: 172 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 315 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 269 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 321
>SAHH3_PONPY (Q5R889) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 508 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +1 Query: 172 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 315 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 166 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 218
>SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3) Length = 613 Score = 29.3 bits (64), Expect = 6.5 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Frame = +1 Query: 172 AATARKEIAGLLWSG-----WWWWCR*CEEADGWQKGGRRWDGPQLTSFLWRR 315 AA A W G +WW C +GWQ DG LT +++++ Sbjct: 271 AALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIYKK 323
>PIP12_ORYSA (Q7XSQ9) Probable aquaporin PIP1.2 (Plasma membrane intrinsic| protein 1.2) (OsPIP1.2) Length = 282 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -3 Query: 358 TTPSGAPMRCRARGLSSKGSSSAEDHPTDARPSA 257 TT S RC ++G SS+G S+A+ P+ PS+ Sbjct: 26 TTRSRRRRRCSSQGSSSRGPSTAQGSPSSWPPSS 59
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 29.3 bits (64), Expect = 6.5 Identities = 13/32 (40%), Positives = 14/32 (43%) Frame = -2 Query: 392 PLGPRDTWHARNDPFRRTYEMPGERALLQRKL 297 P P D W P E+PG LLQR L Sbjct: 1366 PRQPHDVWPVSTAPLHAVLELPGALPLLQRPL 1397
>COAT_SOUV3 (Q04542) Capsid protein (Coat protein)| Length = 546 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/32 (43%), Positives = 14/32 (43%) Frame = -3 Query: 427 PEPTGSP*GGPCLWDPGTRGMPETTPSGAPMR 332 P P G P G C W P T SG PMR Sbjct: 318 PAPVGFPDFGKCDWHMRISKTPNNTGSGDPMR 349
>TECT2_RAT (Q3B7D3) Tectonic-2 precursor| Length = 700 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/28 (50%), Positives = 15/28 (53%) Frame = +2 Query: 305 FGGEPSRPASHRCAGRGRFGHATCPWVP 388 FGG S P+ HRCA R H T W P Sbjct: 207 FGGYVSPPSHHRCAARTT--HQTPDWFP 232
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 28.9 bits (63), Expect = 8.5 Identities = 20/58 (34%), Positives = 25/58 (43%) Frame = -3 Query: 433 PLPEPTGSP*GGPCLWDPGTRGMPETTPSGAPMRCRARGLSSKGSSSAEDHPTDARPS 260 P P PT SP PG + ++P G + SS SSS +HP RPS Sbjct: 992 PPPPPTASPTPDKS-GSPGKKTSKTSSPGGKKPPPTPQRNSSIKSSSGAEHPEPKRPS 1048
>SOX10_HUMAN (P56693) Transcription factor SOX-10| Length = 466 Score = 28.9 bits (63), Expect = 8.5 Identities = 22/76 (28%), Positives = 31/76 (40%) Frame = +3 Query: 264 GRASVGWSSADELPLEESPLARHLIGAPEGVVSGMPRVPGSQRHGPPHGLPVGSGSGLQV 443 G A G ++A + + + L G + G P P Q HGPP P + LQ Sbjct: 193 GEAEQGGTAAIQAHYKSAHLDHRHPGEGSPMSDGNPEHPSGQSHGPPTP-PTTPKTELQS 251 Query: 444 HKPVXRHDRRPVCGGG 491 K + D R + GG Sbjct: 252 GKADPKRDGRSMGEGG 267
>NR1D1_HUMAN (P20393) Orphan nuclear receptor NR1D1 (V-erbA-related protein| EAR-1) (Rev-erbA-alpha) Length = 614 Score = 28.9 bits (63), Expect = 8.5 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Frame = +2 Query: 317 PSRPASHRCAGRGRFGHATCPW----VPEARAASRAPR 418 P PA H C GH CP PE +A + +PR Sbjct: 370 PPGPAHHSCHQSNSNGHRLCPTHVYAAPEGKAPANSPR 407
>FAT2_RAT (O88277) Protocadherin Fat 2 precursor (Multiple epidermal growth| factor-like domains 1) Length = 4351 Score = 28.9 bits (63), Expect = 8.5 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Frame = -3 Query: 499 CRCPPPQTGRRSCLXTGLWT*RPLPEPTGSP*GGPCLWDP-GTRGMPETTPSGAPMRCRA 323 CRCPPP +GR L T P E GG C+ P GT +G A Sbjct: 3974 CRCPPPFSGRNCELGRENCTSAPCQE------GGTCVSSPEGTSCNCPHPYTGDRCEMEA 4027 Query: 322 RGLS 311 RG S Sbjct: 4028 RGCS 4031
>FAK1_XENLA (Q91738) Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK)| Length = 1068 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = -1 Query: 438 EGHYQSPRGAREAARASGTQGHVACPKRP----LPAHL*DAGREGSP 310 +G+ Q P G + + G HVA PK+P P+HL + SP Sbjct: 861 DGNIQCPAGNQHIYQPVGKPDHVAPPKKPPRPGAPSHLGNLPAHNSP 907
>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid| salivary glycoprotein G1) (Proline-rich protein G1) Length = 309 Score = 28.9 bits (63), Expect = 8.5 Identities = 18/51 (35%), Positives = 19/51 (37%) Frame = -3 Query: 490 PPPQTGRRSCLXTGLWT*RPLPEPTGSP*GGPCLWDPGTRGMPETTPSGAP 338 PPP G +PLP P G P G P P G P P G P Sbjct: 269 PPPPGGNPQ---------QPLPPPAGKPQGPP---PPPQGGRPHRPPQGQP 307 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,171,054 Number of Sequences: 219361 Number of extensions: 2086558 Number of successful extensions: 7062 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 6389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7040 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
