ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27a21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 5e-54
2dbj|AK060408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 3e-49
3gb|AY107650.1| Zea mays PCO102139 mRNA sequence 100 1e-17
4ref|XM_475822.1| Oryza sativa (japonica cultivar-group), predic... 94 7e-16
5gb|BT018208.1| Zea mays clone EL01N0560C12.c mRNA sequence 92 3e-15
6gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome... 70 1e-08
7gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome... 70 1e-08
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
9gb|AC160559.5| Mus musculus BAC clone RP24-404N24 from chromosom... 46 0.15
10gb|AC168058.4| Mus musculus BAC clone RP24-134D11 from chromosom... 46 0.15
11emb|AL353688.7| Human DNA sequence from clone RP11-275O3 on chro... 44 0.60
12gb|AC120541.8| Mus musculus, clone RP23-286L18, complete sequence 42 2.4
13gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete ... 42 2.4
14gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 9.4
15ref|XM_592983.2| PREDICTED: Bos taurus similar to DVL-binding pr... 40 9.4
16gb|AC123610.10| Mus musculus chromosome 9, clone RP23-343M15, co... 40 9.4
17gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC... 40 9.4
18gb|AC025774.5| Homo sapiens chromosome 5 clone CTD-2292N2, compl... 40 9.4
19gb|AC055739.23| Homo sapiens 3 BAC RP11-197K3 (Roswell Park Canc... 40 9.4
20emb|BX544890.7| Zebrafish DNA sequence from clone DKEY-240I4 in ... 40 9.4
21gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, com... 40 9.4
22gb|AC021427.10| Homo sapiens chromosome 11, clone RP11-399N15, c... 40 9.4
23gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 9.4
24dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
26gb|AC093459.5| Homo sapiens BAC clone RP11-499M11 from 2, comple... 40 9.4
27gb|AC114815.5| Homo sapiens BAC clone RP11-1369K4 from 4, comple... 40 9.4
28gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y... 40 9.4
29gb|AC153535.4| Mus musculus 10 BAC RP23-398N22 (Roswell Park Can... 40 9.4
30dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
31dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.4
32gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 9.4
33emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 i... 40 9.4
34emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4,... 40 9.4
35emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4,... 40 9.4
36emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chr... 40 9.4 
>dbj|AK101373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035N15, full
            insert sequence
          Length = 1783

 Score =  220 bits (111), Expect = 5e-54
 Identities = 220/255 (86%), Gaps = 1/255 (0%)
 Strand = Plus / Minus

                                                                        
Query: 435  ttctcggcctccagttgtttagcctcctccaatagcatagccaacccgaagttcattttc 494
            ||||| ||||| ||||||||||||||||||| ||||||||  |||| |||||||||||||
Sbjct: 1233 ttctctgcctcaagttgtttagcctcctccattagcatagataacc-gaagttcattttc 1175

                                                                        
Query: 495  tttcacacggtcctgaagcacacctatagcagggctcaagcagtattccatcagtttgca 554
             |||| ||| |||||||| |||  ||||||||||||||| ||||||||||| | ||||||
Sbjct: 1174 cttcagacgatcctgaagtacagttatagcagggctcaaacagtattccattaatttgca 1115

                                                                        
Query: 555  tagagaagcattgtatgtggaggtatggtgcatagatgtaagtgggtgcatcttcccatc 614
             ||||| |  |||||||| || | |||||| ||||||||||||||||| |||||||||||
Sbjct: 1114 gagagatgagttgtatgtagatgcatggtgaatagatgtaagtgggtggatcttcccatc 1055

                                                                        
Query: 615  acaaatgttctgaagcatggcttggttatatgctgattgttcctctttaaaaaggacatg 674
            || ||| || ||| |||||||||| ||||||||||||| ||||||||  |||| ||||||
Sbjct: 1054 acgaatattttgatgcatggcttgattatatgctgatttttcctcttcgaaaacgacatg 995

                           
Query: 675  ttgcatgccacagta 689
            ||||||  |||||||
Sbjct: 994  ttgcatatcacagta 980
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>dbj|AK060408.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D07, full
            insert sequence
          Length = 1778

 Score =  204 bits (103), Expect = 3e-49
 Identities = 218/255 (85%), Gaps = 1/255 (0%)
 Strand = Plus / Minus

                                                                        
Query: 435  ttctcggcctccagttgtttagcctcctccaatagcatagccaacccgaagttcattttc 494
            ||||| ||||| ||||||||||||||||||| ||||||||  |||| |||||||||||||
Sbjct: 1229 ttctctgcctcaagttgtttagcctcctccattagcatagataacc-gaagttcattttc 1171

                                                                        
Query: 495  tttcacacggtcctgaagcacacctatagcagggctcaagcagtattccatcagtttgca 554
             |||| ||| |||||||| |||  ||||||||||||||| || |||||||| | ||||||
Sbjct: 1170 cttcagacgatcctgaagtacagttatagcagggctcaaacaatattccattaatttgca 1111

                                                                        
Query: 555  tagagaagcattgtatgtggaggtatggtgcatagatgtaagtgggtgcatcttcccatc 614
             ||||| |  |||||||| || | |||||| ||||||||||||||||| |||||||||||
Sbjct: 1110 gagagatgagttgtatgtagatgcatggtgaatagatgtaagtgggtggatcttcccatc 1051

                                                                        
Query: 615  acaaatgttctgaagcatggcttggttatatgctgattgttcctctttaaaaaggacatg 674
            || ||| || ||| |||||||||| ||||||||||||| ||||||||   ||| ||||||
Sbjct: 1050 acgaatattttgatgcatggcttgattatatgctgatttttcctcttcggaaacgacatg 991

                           
Query: 675  ttgcatgccacagta 689
            ||||||  |||||||
Sbjct: 990  ttgcatatcacagta 976
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>gb|AY107650.1| Zea mays PCO102139 mRNA sequence
          Length = 1146

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 170/210 (80%)
 Strand = Plus / Minus

                                                                       
Query: 480 ccgaagttcattttctttcacacggtcctgaagcacacctatagcagggctcaagcagta 539
           ||||||||||||||| ||||  ||||||||||||  |   | ||| || ||||| || ||
Sbjct: 529 ccgaagttcattttccttcaggcggtcctgaagcgtaataacagctggactcaaacaata 470

                                                                       
Query: 540 ttccatcagtttgcatagagaagcattgtatgtggaggtatggtgcatagatgtaagtgg 599
            ||||| |||||||||||||| |  |||||||| || |||  ||| || |||||||| ||
Sbjct: 469 ctccattagtttgcatagagaggagttgtatgtagacgtacagtgaatggatgtaagagg 410

                                                                       
Query: 600 gtgcatcttcccatcacaaatgttctgaagcatggcttggttatatgctgattgttcctc 659
           ||| || |||||||||||||| || ||  |||| ||||| |||||||||||||| |||||
Sbjct: 409 gtgaattttcccatcacaaatattttgttgcatagcttgattatatgctgattgctcctc 350

                                         
Query: 660 tttaaaaaggacatgttgcatgccacagta 689
           || ||| |||||  |||||||  |||||||
Sbjct: 349 ttcaaacaggactcgttgcatatcacagta 320
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>ref|XM_475822.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 87/99 (87%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                        
Query: 435  ttctcggcctccagttgtttagcctcctccaatagcatagccaacccgaagttcattttc 494
            ||||| ||||| ||||||||||||||||||| ||||||||  |||| |||||||||||||
Sbjct: 1004 ttctctgcctcaagttgtttagcctcctccattagcatagataacc-gaagttcattttc 946

                                                   
Query: 495  tttcacacggtcctgaagcacacctatagcagggctcaa 533
             |||| ||| |||||||| |||  |||||||||||||||
Sbjct: 945  cttcagacgatcctgaagtacagttatagcagggctcaa 907



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 73/85 (85%)
 Strand = Plus / Minus

                                                                       
Query: 538 tattccatcagtttgcatagagaagcattgtatgtggaggtatggtgcatagatgtaagt 597
           |||||||| | |||||| ||||| |  |||||||| || | |||||| ||||||||||||
Sbjct: 866 tattccattaatttgcagagagatgagttgtatgtagatgcatggtgaatagatgtaagt 807

                                    
Query: 598 gggtgcatcttcccatcacaaatgt 622
           ||||| ||||||||||||| |||||
Sbjct: 806 gggtggatcttcccatcactaatgt 782
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>gb|BT018208.1| Zea mays clone EL01N0560C12.c mRNA sequence
          Length = 1328

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 169/210 (80%)
 Strand = Plus / Minus

                                                                       
Query: 480 ccgaagttcattttctttcacacggtcctgaagcacacctatagcagggctcaagcagta 539
           ||||||||||||||| ||||  || |||||||||  |   | ||| || ||||| || ||
Sbjct: 758 ccgaagttcattttccttcaggcgatcctgaagcgtaataacagctggactcaaacaata 699

                                                                       
Query: 540 ttccatcagtttgcatagagaagcattgtatgtggaggtatggtgcatagatgtaagtgg 599
            ||||| |||||||||||||| |  |||||||| || |||  ||| || |||||||| ||
Sbjct: 698 ctccattagtttgcatagagaggagttgtatgtagacgtacagtgaatggatgtaagagg 639

                                                                       
Query: 600 gtgcatcttcccatcacaaatgttctgaagcatggcttggttatatgctgattgttcctc 659
           ||| || |||||||||||||| || ||  |||| ||||| |||||||||||||| |||||
Sbjct: 638 gtgaattttcccatcacaaatattttgttgcatagcttgattatatgctgattgctcctc 579

                                         
Query: 660 tttaaaaaggacatgttgcatgccacagta 689
           || ||| |||||  |||||||  |||||||
Sbjct: 578 ttcaaacaggactcgttgcatatcacagta 549
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>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11,
              complete sequence
          Length = 115808

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                          
Query: 538    tattccatcagtttgcatagagaagcattgtatgtggaggtatggtgcatagatgtaagt 597
              |||||||| | |||||| ||||| |  |||||||| || | |||||| ||||||||||||
Sbjct: 109187 tattccattaatttgcagagagatgagttgtatgtagatgcatggtgaatagatgtaagt 109128

                                 
Query: 598    gggtgcatcttcccatcac 616
              ||||| |||||||||||||
Sbjct: 109127 gggtggatcttcccatcac 109109



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                          
Query: 629    gcatggcttggttatatgctgattgttcctctttaaaaaggacatgttgcatgccacagt 688
              |||||||||| ||||||||||||| ||||||||  |||| ||||||||||||  ||||||
Sbjct: 109011 gcatggcttgattatatgctgatttttcctcttcgaaaacgacatgttgcatatcacagt 108952

               
Query: 689    a 689
              |
Sbjct: 108951 a 108951



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                      
Query: 478    acccgaagttcattttctttcacacggtcctgaagcacacctatagcagggctcaa 533
              ||||||||||||||||| |||| ||| |||||||| |||  |||||||||||||||
Sbjct: 109337 acccgaagttcattttccttcagacgatcctgaagtacagttatagcagggctcaa 109282



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                      
Query: 435    ttctcggcctccagttgtttagcctcctccaatagcatag 474
              ||||| ||||| ||||||||||||||||||| ||||||||
Sbjct: 109454 ttctctgcctcaagttgtttagcctcctccattagcatag 109415
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>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
             complete sequence
          Length = 122120

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                         
Query: 538   tattccatcagtttgcatagagaagcattgtatgtggaggtatggtgcatagatgtaagt 597
             |||||||| | |||||| ||||| |  |||||||| || | |||||| ||||||||||||
Sbjct: 10129 tattccattaatttgcagagagatgagttgtatgtagatgcatggtgaatagatgtaagt 10070

                                
Query: 598   gggtgcatcttcccatcac 616
             ||||| |||||||||||||
Sbjct: 10069 gggtggatcttcccatcac 10051



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                        
Query: 629  gcatggcttggttatatgctgattgttcctctttaaaaaggacatgttgcatgccacagt 688
            |||||||||| ||||||||||||| ||||||||  |||| ||||||||||||  ||||||
Sbjct: 9953 gcatggcttgattatatgctgatttttcctcttcgaaaacgacatgttgcatatcacagt 9894

             
Query: 689  a 689
            |
Sbjct: 9893 a 9893



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                     
Query: 478   acccgaagttcattttctttcacacggtcctgaagcacacctatagcagggctcaa 533
             ||||||||||||||||| |||| ||| |||||||| |||  |||||||||||||||
Sbjct: 10279 acccgaagttcattttccttcagacgatcctgaagtacagttatagcagggctcaa 10224



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 435   ttctcggcctccagttgtttagcctcctccaatagcatag 474
             ||||| ||||| ||||||||||||||||||| ||||||||
Sbjct: 10396 ttctctgcctcaagttgtttagcctcctccattagcatag 10357
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 68/79 (86%)
 Strand = Plus / Minus

                                                                            
Query: 538      tattccatcagtttgcatagagaagcattgtatgtggaggtatggtgcatagatgtaagt 597
                |||||||| | |||||| ||||| |  |||||||| || | |||||| ||||||||||||
Sbjct: 26728190 tattccattaatttgcagagagatgagttgtatgtagatgcatggtgaatagatgtaagt 26728131

                                   
Query: 598      gggtgcatcttcccatcac 616
                ||||| |||||||||||||
Sbjct: 26728130 gggtggatcttcccatcac 26728112



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                            
Query: 629      gcatggcttggttatatgctgattgttcctctttaaaaaggacatgttgcatgccacagt 688
                |||||||||| ||||||||||||| ||||||||  |||| ||||||||||||  ||||||
Sbjct: 26728014 gcatggcttgattatatgctgatttttcctcttcgaaaacgacatgttgcatatcacagt 26727955

                 
Query: 689      a 689
                |
Sbjct: 26727954 a 26727954



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                        
Query: 478      acccgaagttcattttctttcacacggtcctgaagcacacctatagcagggctcaa 533
                ||||||||||||||||| |||| ||| |||||||| |||  |||||||||||||||
Sbjct: 26728340 acccgaagttcattttccttcagacgatcctgaagtacagttatagcagggctcaa 26728285



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 435      ttctcggcctccagttgtttagcctcctccaatagcatag 474
                ||||| ||||| ||||||||||||||||||| ||||||||
Sbjct: 26728457 ttctctgcctcaagttgtttagcctcctccattagcatag 26728418
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>gb|AC160559.5| Mus musculus BAC clone RP24-404N24 from chromosome 10, complete
             sequence
          Length = 157670

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 45    cacttgagtactgctacacatta 67
             |||||||||||||||||||||||
Sbjct: 87696 cacttgagtactgctacacatta 87718
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>gb|AC168058.4| Mus musculus BAC clone RP24-134D11 from chromosome 10, complete
             sequence
          Length = 199406

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 45    cacttgagtactgctacacatta 67
             |||||||||||||||||||||||
Sbjct: 27997 cacttgagtactgctacacatta 27975
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>emb|AL353688.7| Human DNA sequence from clone RP11-275O3 on chromosome 13, complete
             sequence
          Length = 92569

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 644   atgctgattgttcctctttaaa 665
             ||||||||||||||||||||||
Sbjct: 41747 atgctgattgttcctctttaaa 41768
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>gb|AC120541.8| Mus musculus, clone RP23-286L18, complete sequence
          Length = 171942

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 645   tgctgattgttcctctttaaaaagg 669
             ||||| |||||||||||||||||||
Sbjct: 92340 tgctgtttgttcctctttaaaaagg 92364
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>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence
          Length = 89352

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 236   ccagaaagcatcaggaaaggcccag 260
             ||||||| |||||||||||||||||
Sbjct: 50619 ccagaaaccatcaggaaaggcccag 50643
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    gcctcacgccaagggacagg 227
              ||||||||||||||||||||
Sbjct: 878153 gcctcacgccaagggacagg 878134
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>ref|XM_592983.2| PREDICTED: Bos taurus similar to DVL-binding protein DAPLE
            (LOC515039), mRNA
          Length = 6866

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 428  gccctgcttctcggcctccagttg 451
            |||||| |||||||||||||||||
Sbjct: 1956 gccctggttctcggcctccagttg 1933
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>gb|AC123610.10| Mus musculus chromosome 9, clone RP23-343M15, complete sequence
          Length = 206563

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 598    gggtgcatcttcccatcacaaatg 621
              ||||||||||||||| ||||||||
Sbjct: 117481 gggtgcatcttcccaccacaaatg 117504
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>gb|AC008261.5|ATAC008261 Arabidopsis thaliana chromosome III BAC T4P13 genomic sequence,
             complete sequence
          Length = 93735

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   ttttcgtgccctgcttctcg 440
             ||||||||||||||||||||
Sbjct: 25320 ttttcgtgccctgcttctcg 25301
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>gb|AC025774.5| Homo sapiens chromosome 5 clone CTD-2292N2, complete sequence
          Length = 155092

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   agatgggtatatacatttgc 194
             ||||||||||||||||||||
Sbjct: 50261 agatgggtatatacatttgc 50280
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>gb|AC055739.23| Homo sapiens 3 BAC RP11-197K3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 136000

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 610    ccatcacaaatgttctgaagcatg 633
              |||||||||||||| |||||||||
Sbjct: 109556 ccatcacaaatgttgtgaagcatg 109579
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>emb|BX544890.7| Zebrafish DNA sequence from clone DKEY-240I4 in linkage group 14,
             complete sequence
          Length = 93993

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   ttgcattgcagcttcatgcc 210
             ||||||||||||||||||||
Sbjct: 65206 ttgcattgcagcttcatgcc 65187
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>gb|AC044810.7| Homo sapiens chromosome 11, clone RP11-494M8, complete sequence
          Length = 194297

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    ttcattttctttcacacggt 505
              ||||||||||||||||||||
Sbjct: 100819 ttcattttctttcacacggt 100800
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>gb|AC021427.10| Homo sapiens chromosome 11, clone RP11-399N15, complete sequence
          Length = 174147

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    ttcattttctttcacacggt 505
              ||||||||||||||||||||
Sbjct: 162871 ttcattttctttcacacggt 162852
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 276     catgacaatcaaggagcctt 295
               ||||||||||||||||||||
Sbjct: 3662848 catgacaatcaaggagcctt 3662867
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 530      tcaagcagtattccatcagtttgcatag 557
                ||||| |||||||||||| |||||||||
Sbjct: 15330799 tcaagtagtattccatcaatttgcatag 15330772



 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 530      tcaagcagtattccatcagtttgcatag 557
                ||||| |||||||||||| |||||||||
Sbjct: 14583482 tcaagtagtattccatcaatttgcatag 14583509
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 177     atgggtatatacatttgcat 196
               ||||||||||||||||||||
Sbjct: 3987095 atgggtatatacatttgcat 3987076
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>gb|AC093459.5| Homo sapiens BAC clone RP11-499M11 from 2, complete sequence
          Length = 76527

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   atacatttgcattgcagctt 204
             ||||||||||||||||||||
Sbjct: 15580 atacatttgcattgcagctt 15599
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>gb|AC114815.5| Homo sapiens BAC clone RP11-1369K4 from 4, complete sequence
          Length = 125402

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   aaagggaaccactgttggtt 136
             ||||||||||||||||||||
Sbjct: 10929 aaagggaaccactgttggtt 10948
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>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence
          Length = 178377

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 627   aagcatggcttggttatatg 646
             ||||||||||||||||||||
Sbjct: 10323 aagcatggcttggttatatg 10304
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>gb|AC153535.4| Mus musculus 10 BAC RP23-398N22 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 200061

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   acatttgcattgcagcttca 206
             ||||||||||||||||||||
Sbjct: 27895 acatttgcattgcagcttca 27914
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>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0073A21
          Length = 170051

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   atgggtatatacatttgcat 196
             ||||||||||||||||||||
Sbjct: 33761 atgggtatatacatttgcat 33742
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>dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0030G02
          Length = 187265

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    atgggtatatacatttgcat 196
              ||||||||||||||||||||
Sbjct: 185566 atgggtatatacatttgcat 185547
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    catgacaatcaaggagcctt 295
              ||||||||||||||||||||
Sbjct: 629072 catgacaatcaaggagcctt 629053
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>emb|BX005218.6| Zebrafish DNA sequence from clone CH211-127L12 in linkage group 14,
             complete sequence
          Length = 183670

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   ttgcattgcagcttcatgcc 210
             ||||||||||||||||||||
Sbjct: 24599 ttgcattgcagcttcatgcc 24580
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>emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063G07,
             complete sequence
          Length = 157622

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 530   tcaagcagtattccatcagtttgcatag 557
             ||||| |||||||||||| |||||||||
Sbjct: 19683 tcaagtagtattccatcaatttgcatag 19656
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>emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0050F15,
             complete sequence
          Length = 150562

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 530   tcaagcagtattccatcagtttgcatag 557
             ||||| |||||||||||| |||||||||
Sbjct: 51619 tcaagtagtattccatcaatttgcatag 51646
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>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete
              sequence
          Length = 165700

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    ttggttggttgcttccacag 150
              ||||||||||||||||||||
Sbjct: 155965 ttggttggttgcttccacag 155946


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,663,556
Number of Sequences: 3902068
Number of extensions: 6663556
Number of successful extensions: 124477
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124189
Number of HSP's gapped (non-prelim): 285
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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