ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27a18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY596597.1| Saccharum officinarum clone SCCCLR1C01H06, comple... 280 6e-72
2gb|AY104701.1| Zea mays PCO096148 mRNA sequence 270 6e-69
3ref|XM_472924.1| Oryza sativa (japonica cultivar-group), predic... 254 3e-64
4emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 254 3e-64
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 254 3e-64
6dbj|AK068497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 254 3e-64
7ref|NM_125714.2| Arabidopsis thaliana unknown protein AT5G63190 ... 86 2e-13
8ref|NM_180924.1| Arabidopsis thaliana unknown protein AT5G63190 ... 86 2e-13
9gb|AY142667.1| Arabidopsis thaliana putative topoisomerase (At5g... 86 2e-13
10gb|AY039947.1| Arabidopsis thaliana putative topoisomerase (At5g... 86 2e-13
11gb|AY085894.1| Arabidopsis thaliana clone 19433 mRNA, complete s... 86 2e-13
12gb|DQ108755.1| Arabidopsis thaliana clone 17022 mRNA sequence 86 2e-13
13dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 86 2e-13
14ref|NM_118613.1| Arabidopsis thaliana unknown protein AT4G24800 ... 76 2e-10
15ref|NM_001036631.1| Arabidopsis thaliana unknown protein AT4G248... 76 2e-10
16emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, ... 76 2e-10
17emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC... 76 2e-10
18gb|AY124878.1| Arabidopsis thaliana AT4g24800/F6I7_10 mRNA, comp... 76 2e-10
19gb|AY062102.1| Arabidopsis thaliana AT4g24800/F6I7_10 mRNA, comp... 76 2e-10
20dbj|AK221703.1| Arabidopsis thaliana mRNA for hypothetical prote... 76 2e-10
21gb|BT018954.1| Zea mays clone Contig146.F mRNA sequence 72 3e-09
22gb|AY104255.1| Zea mays PCO124332 mRNA sequence 66 2e-07
23ref|NM_187687.1| Oryza sativa (japonica cultivar-group), predic... 50 0.010
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.010
25gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.010
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.010
27dbj|AK070688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.010
28gb|BC070577.1| Xenopus laevis hypothetical protein MGC81066, mRN... 44 0.63
29ref|XM_479828.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.5
30gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosom... 42 2.5
31ref|XM_757637.1| Theileria parva strain Muguga hypothetical prot... 42 2.5
32ref|XM_757625.1| Theileria parva strain Muguga chromosome 3 hypo... 42 2.5
33emb|AL928651.13| Mouse DNA sequence from clone RP23-167A19 on ch... 42 2.5
34dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
35dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
36dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
37dbj|AK104476.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
38dbj|AK102447.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
39dbj|AK067413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
40gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 42 2.5
41gb|AC153644.3| Mus musculus BAC clone RP24-531A1 from 1, complet... 42 2.5
42dbj|AK060858.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.5
43ref|XM_529073.1| PREDICTED: Pan troglodytes similar to TGF beta-... 40 9.8
44ref|XM_517704.1| PREDICTED: Pan troglodytes similar to TGF beta-... 40 9.8
45ref|NM_001034546.1| Bos taurus similar to TGF beta-inducible nuc... 40 9.8
46gb|AC105259.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.8
47ref|XM_587457.2| PREDICTED: Bos taurus similar to putative secre... 40 9.8
48gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, com... 40 9.8
49gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, co... 40 9.8
50gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, co... 40 9.8
51gb|AC155711.14| Mus musculus 10 BAC RP24-189K8 (Roswell Park Can... 40 9.8
52emb|CR792425.6| Zebrafish DNA sequence from clone DKEY-81N9 in l... 40 9.8
53gb|BC062441.1| Homo sapiens cDNA clone IMAGE:6621304, partial cds 40 9.8
54emb|CR547121.11| Zebrafish DNA sequence from clone DKEY-118G10 i... 40 9.8
55emb|Z73417.1|HSU131B10 Human DNA sequence from clone LL0XNC01-13... 40 9.8
56emb|Z70226.1|HSV1077H7 Human DNA sequence from clone GHc-1077H7 ... 40 9.8
57emb|AL590396.13| Human DNA sequence from clone RP11-193H5 on chr... 40 9.8
58emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chr... 40 9.8
59gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 9.8
60gb|AC153517.8| Mus musculus 10 BAC RP23-22E18 (Roswell Park Canc... 40 9.8
61gb|BC005288.1| Homo sapiens TGF beta-inducible nuclear protein 1... 40 9.8
62gb|BC104563.1| Bos taurus similar to TGF beta-inducible nuclear ... 40 9.8
63emb|CR620162.1| full-length cDNA clone CS0DB009YD21 of Neuroblas... 40 9.8
64emb|CR614877.1| full-length cDNA clone CS0DB002YH16 of Neuroblas... 40 9.8
65emb|CR613056.1| full-length cDNA clone CS0DB004YN05 of Neuroblas... 40 9.8
66emb|CR600412.1| full-length cDNA clone CS0DI025YI23 of Placenta ... 40 9.8
67gb|AC092793.5| Homo sapiens 12p BAC RP11-74N9 (Roswell Park Canc... 40 9.8
68gb|AC097504.3| Homo sapiens BAC clone RP11-362F19 from 4, comple... 40 9.8
69emb|AL953914.11| Zebrafish DNA sequence from clone CH211-235I18 ... 40 9.8
70gb|AC093214.2| Homo sapiens chromosome 5 clone CTD-2060C23, comp... 40 9.8
71gb|AC016594.7| Homo sapiens chromosome 5 clone CTD-2010O3, compl... 40 9.8
72gb|AF372458.1|AF372458 Homo sapiens hairy cell leukemia protein ... 40 9.8
73dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
74dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
75gb|AC145068.8| Mus musculus chromosome 8, clone RP23-197G5, comp... 40 9.8
76ref|NM_014886.2| Homo sapiens TGF beta-inducible nuclear protein... 40 9.8
77gb|AF077615.1|AF077615 Homo sapiens TGF beta inducible nuclear p... 40 9.8
78gb|AC092641.2| Homo sapiens BAC clone RP11-389F18 from 2, comple... 40 9.8
79dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
80emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chro... 40 9.8
81emb|AJ012409.1|HSA012409 Homo sapiens mRNA for hypothetical prot... 40 9.8
82emb|CR974440.6| Zebrafish DNA sequence from clone CH73-78M16 in ... 40 9.8
83gb|AY443419.1| Homo sapiens TGF-beta inducible nuclear protein (... 40 9.8
84gb|AY141876.1| Triticum aestivum cultivar TAM104R gag polyprotei... 40 9.8 
>gb|AY596597.1| Saccharum officinarum clone SCCCLR1C01H06, complete sequence
          Length = 2436

 Score =  280 bits (141), Expect = 6e-72
 Identities = 303/357 (84%)
 Strand = Plus / Minus

                                                                        
Query: 362  ggaggcgaaggaaggtagcagccagccgcgctctgtcgcaagctccacgtagcctctgaa 421
            |||||||||||  || |||||||||||||||||||| || |||||||| ||  |||  ||
Sbjct: 2162 ggaggcgaaggtcggcagcagccagccgcgctctgttgcgagctccacatactctccaaa 2103

                                                                        
Query: 422  cttctcctgcgcgtttgggatgtcaagggtcagatcgtcgaggccttccttgacacgagc 481
            ||||||||| || ||||||||||| ||| ||||||| || ||||||||||||||||| ||
Sbjct: 2102 cttctcctgagcatttgggatgtcgaggatcagatcatcaaggccttccttgacacgggc 2043

                                                                        
Query: 482  aaaaccgttggtcatctggttgatggttatcagcccctccccggagcactcctgcaagag 541
            ||| || |||||||||||||||||||||||||||||||| ||| | ||||||||||  ||
Sbjct: 2042 aaagcctttggtcatctggttgatggttatcagcccctcgccgaaacactcctgcagcag 1983

                                                                        
Query: 542  agccaagatgctagcttcattctgcttctccatcgccatcaccagcgctttcttcaccac 601
             ||||||||||| |  ||| | ||||||||||||||||| || || || ||||| |||||
Sbjct: 1982 ggccaagatgctggtgtcactatgcttctccatcgccatgactagtgccttctttaccac 1923

                                                                        
Query: 602  ttcatggttgaagaagggcatcccaaggtcacggatacactggcaggcttccttcaggtc 661
             |||||||||||||||||||||||||| |||||||| ||   |||||||||   ||||||
Sbjct: 1922 ctcatggttgaagaagggcatcccaagatcacggatgcatctgcaggcttctcccaggtc 1863

                                                                     
Query: 662  cccgccggtgttgtactcctcaaggagcttggagatcttgtcctttgcgtcttccac 718
             || || |||||||| ||||| | |||||| | |||||||||||| || ||||||||
Sbjct: 1862 accacccgtgttgtattcctccaagagcttagtgatcttgtccttggcatcttccac 1806
to top
>gb|AY104701.1| Zea mays PCO096148 mRNA sequence
          Length = 2251

 Score =  270 bits (136), Expect = 6e-69
 Identities = 301/356 (84%)
 Strand = Plus / Minus

                                                                        
Query: 351  gctcagggcagggaggcgaaggaaggtagcagccagccgcgctctgtcgcaagctccacg 410
            |||||||| | |||||||||||  || |||||||||||||||||||| || |||||||| 
Sbjct: 1977 gctcagggaacggaggcgaaggtcggcagcagccagccgcgctctgttgccagctccaca 1918

                                                                        
Query: 411  tagcctctgaacttctcctgcgcgtttgggatgtcaagggtcagatcgtcgaggccttcc 470
            ||  |||  ||||||||||| || ||||||||||| ||| ||||||| || |||||||||
Sbjct: 1917 tactctccaaacttctcctgggcatttgggatgtcgaggatcagatcatcaaggccttcc 1858

                                                                        
Query: 471  ttgacacgagcaaaaccgttggtcatctggttgatggttatcagcccctccccggagcac 530
            |||||||| ||||| || ||||||||||||||||||||||| |||||||| ||| | |||
Sbjct: 1857 ttgacacgggcaaagcctttggtcatctggttgatggttatgagcccctcgccgaaacac 1798

                                                                        
Query: 531  tcctgcaagagagccaagatgctagcttcattctgcttctccatcgccatcaccagcgct 590
            |||||||  ||  |||||||||| |  ||||||||||||||||||||||| ||||| || 
Sbjct: 1797 tcctgcagcaggaccaagatgctggtgtcattctgcttctccatcgccatgaccagtgcc 1738

                                                                        
Query: 591  ttcttcaccacttcatggttgaagaagggcatcccaaggtcacggatacactggcaggct 650
            ||||| ||||| |||||||||||||||||||||||||| |||||||| ||   |||||||
Sbjct: 1737 ttctttaccacctcatggttgaagaagggcatcccaagatcacggatgcatctgcaggct 1678

                                                                    
Query: 651  tccttcaggtccccgccggtgttgtactcctcaaggagcttggagatcttgtcctt 706
            ||    ||||| || || |||||||| ||||| |  ||||| | ||||||||||||
Sbjct: 1677 tctcctaggtcaccaccagtgttgtattcctccaatagcttagtgatcttgtcctt 1622
to top
>ref|XM_472924.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1989

 Score =  254 bits (128), Expect = 3e-64
 Identities = 254/296 (85%)
 Strand = Plus / Minus

                                                                        
Query: 420  aacttctcctgcgcgtttgggatgtcaagggtcagatcgtcgaggccttccttgacacga 479
            ||||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||| |||
Sbjct: 1931 aacttctcctgtgcatttgggatgtcgaggatcagatcatcgaggccttccttgacgcga 1872

                                                                        
Query: 480  gcaaaaccgttggtcatctggttgatggttatcagcccctccccggagcactcctgcaag 539
            |  || ||    |||||||||||||| |||||||||||||| ||| |||||||||| |  
Sbjct: 1871 gtgaagcctaatgtcatctggttgattgttatcagcccctcaccgaagcactcctgtagc 1812

                                                                        
Query: 540  agagccaagatgctagcttcattctgcttctccatcgccatcaccagcgctttcttcacc 599
            ||||||||||| || |||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 1811 agagccaagatccttgcttcattctccttctccattgccataacaagcgctttcttcacc 1752

                                                                        
Query: 600  acttcatggttgaagaagggcatcccaaggtcacggatacactggcaggcttccttcagg 659
            ||||||||||||||||||||||| |||||||||||||| || ||||| || |||  || |
Sbjct: 1751 acttcatggttgaagaagggcattccaaggtcacggatgcattggcaagcctcccccaag 1692

                                                                    
Query: 660  tccccgccggtgttgtactcctcaaggagcttggagatcttgtcctttgcgtcttc 715
            || ||||| || ||||| || ||||||||||| | |||||||||||| || |||||
Sbjct: 1691 tcaccgccagtattgtattcttcaaggagctttgcgatcttgtccttcgcatcttc 1636
to top
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
              complete sequence
          Length = 129498

 Score =  254 bits (128), Expect = 3e-64
 Identities = 254/296 (85%)
 Strand = Plus / Plus

                                                                          
Query: 420    aacttctcctgcgcgtttgggatgtcaagggtcagatcgtcgaggccttccttgacacga 479
              ||||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||| |||
Sbjct: 106629 aacttctcctgtgcatttgggatgtcgaggatcagatcatcgaggccttccttgacgcga 106688

                                                                          
Query: 480    gcaaaaccgttggtcatctggttgatggttatcagcccctccccggagcactcctgcaag 539
              |  || ||    |||||||||||||| |||||||||||||| ||| |||||||||| |  
Sbjct: 106689 gtgaagcctaatgtcatctggttgattgttatcagcccctcaccgaagcactcctgtagc 106748

                                                                          
Query: 540    agagccaagatgctagcttcattctgcttctccatcgccatcaccagcgctttcttcacc 599
              ||||||||||| || |||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 106749 agagccaagatccttgcttcattctccttctccattgccataacaagcgctttcttcacc 106808

                                                                          
Query: 600    acttcatggttgaagaagggcatcccaaggtcacggatacactggcaggcttccttcagg 659
              ||||||||||||||||||||||| |||||||||||||| || ||||| || |||  || |
Sbjct: 106809 acttcatggttgaagaagggcattccaaggtcacggatgcattggcaagcctcccccaag 106868

                                                                      
Query: 660    tccccgccggtgttgtactcctcaaggagcttggagatcttgtcctttgcgtcttc 715
              || ||||| || ||||| || ||||||||||| | |||||||||||| || |||||
Sbjct: 106869 tcaccgccagtattgtattcttcaaggagctttgcgatcttgtccttcgcatcttc 106924
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  254 bits (128), Expect = 3e-64
 Identities = 254/296 (85%)
 Strand = Plus / Plus

                                                                            
Query: 420      aacttctcctgcgcgtttgggatgtcaagggtcagatcgtcgaggccttccttgacacga 479
                ||||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||| |||
Sbjct: 24109650 aacttctcctgtgcatttgggatgtcgaggatcagatcatcgaggccttccttgacgcga 24109709

                                                                            
Query: 480      gcaaaaccgttggtcatctggttgatggttatcagcccctccccggagcactcctgcaag 539
                |  || ||    |||||||||||||| |||||||||||||| ||| |||||||||| |  
Sbjct: 24109710 gtgaagcctaatgtcatctggttgattgttatcagcccctcaccgaagcactcctgtagc 24109769

                                                                            
Query: 540      agagccaagatgctagcttcattctgcttctccatcgccatcaccagcgctttcttcacc 599
                ||||||||||| || |||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 24109770 agagccaagatccttgcttcattctccttctccattgccataacaagcgctttcttcacc 24109829

                                                                            
Query: 600      acttcatggttgaagaagggcatcccaaggtcacggatacactggcaggcttccttcagg 659
                ||||||||||||||||||||||| |||||||||||||| || ||||| || |||  || |
Sbjct: 24109830 acttcatggttgaagaagggcattccaaggtcacggatgcattggcaagcctcccccaag 24109889

                                                                        
Query: 660      tccccgccggtgttgtactcctcaaggagcttggagatcttgtcctttgcgtcttc 715
                || ||||| || ||||| || ||||||||||| | |||||||||||| || |||||
Sbjct: 24109890 tcaccgccagtattgtattcttcaaggagctttgcgatcttgtccttcgcatcttc 24109945
to top
>dbj|AK068497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G23, full
            insert sequence
          Length = 2486

 Score =  254 bits (128), Expect = 3e-64
 Identities = 254/296 (85%)
 Strand = Plus / Minus

                                                                        
Query: 420  aacttctcctgcgcgtttgggatgtcaagggtcagatcgtcgaggccttccttgacacga 479
            ||||||||||| || ||||||||||| ||| ||||||| ||||||||||||||||| |||
Sbjct: 2078 aacttctcctgtgcatttgggatgtcgaggatcagatcatcgaggccttccttgacgcga 2019

                                                                        
Query: 480  gcaaaaccgttggtcatctggttgatggttatcagcccctccccggagcactcctgcaag 539
            |  || ||    |||||||||||||| |||||||||||||| ||| |||||||||| |  
Sbjct: 2018 gtgaagcctaatgtcatctggttgattgttatcagcccctcaccgaagcactcctgtagc 1959

                                                                        
Query: 540  agagccaagatgctagcttcattctgcttctccatcgccatcaccagcgctttcttcacc 599
            ||||||||||| || |||||||||| ||||||||| ||||| || |||||||||||||||
Sbjct: 1958 agagccaagatccttgcttcattctccttctccattgccataacaagcgctttcttcacc 1899

                                                                        
Query: 600  acttcatggttgaagaagggcatcccaaggtcacggatacactggcaggcttccttcagg 659
            ||||||||||||||||||||||| |||||||||||||| || ||||| || |||  || |
Sbjct: 1898 acttcatggttgaagaagggcattccaaggtcacggatgcattggcaagcctcccccaag 1839

                                                                    
Query: 660  tccccgccggtgttgtactcctcaaggagcttggagatcttgtcctttgcgtcttc 715
            || ||||| || ||||| || ||||||||||| | |||||||||||| || |||||
Sbjct: 1838 tcaccgccagtattgtattcttcaaggagctttgcgatcttgtccttcgcatcttc 1783
to top
>ref|NM_125714.2| Arabidopsis thaliana unknown protein AT5G63190 transcript variant
            AT5G63190.2 mRNA, complete cds
          Length = 2558

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 558  tcattctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaag 617
            ||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||||| || 
Sbjct: 2117 tcattctgcttctccattgccatcaccaaagctttcttcactacttcgtggttgaaaaaa 2058

                                   
Query: 618  ggcatcccaaggtcacggataca 640
            |||||||| || || ||||||||
Sbjct: 2057 ggcatccctagatcgcggataca 2035
to top
>ref|NM_180924.1| Arabidopsis thaliana unknown protein AT5G63190 transcript variant
            AT5G63190.1 mRNA, complete cds
          Length = 2602

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 558  tcattctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaag 617
            ||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||||| || 
Sbjct: 2161 tcattctgcttctccattgccatcaccaaagctttcttcactacttcgtggttgaaaaaa 2102

                                   
Query: 618  ggcatcccaaggtcacggataca 640
            |||||||| || || ||||||||
Sbjct: 2101 ggcatccctagatcgcggataca 2079
to top
>gb|AY142667.1| Arabidopsis thaliana putative topoisomerase (At5g63190) mRNA,
            complete cds
          Length = 2140

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 558  tcattctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaag 617
            ||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||||| || 
Sbjct: 1901 tcattctgcttctccattgccatcaccaaagctttcttcactacttcgtggttgaaaaaa 1842

                                   
Query: 618  ggcatcccaaggtcacggataca 640
            |||||||| || || ||||||||
Sbjct: 1841 ggcatccctagatcgcggataca 1819
to top
>gb|AY039947.1| Arabidopsis thaliana putative topoisomerase (At5g63190) mRNA,
            complete cds
          Length = 2493

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 558  tcattctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaag 617
            ||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||||| || 
Sbjct: 2154 tcattctgcttctccattgccatcaccaaagctttcttcactacttcgtggttgaaaaaa 2095

                                   
Query: 618  ggcatcccaaggtcacggataca 640
            |||||||| || || ||||||||
Sbjct: 2094 ggcatccctagatcgcggataca 2072
to top
>gb|AY085894.1| Arabidopsis thaliana clone 19433 mRNA, complete sequence
          Length = 2551

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                        
Query: 558  tcattctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaag 617
            ||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||||| || 
Sbjct: 2162 tcattctgcttctccattgccatcaccaaagctttcttcactacttcgtggttgaaaaaa 2103

                                   
Query: 618  ggcatcccaaggtcacggataca 640
            |||||||| || || ||||||||
Sbjct: 2102 ggcatccctagatcgcggataca 2080
to top
>gb|DQ108755.1| Arabidopsis thaliana clone 17022 mRNA sequence
          Length = 1538

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                       
Query: 558 tcattctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaag 617
           ||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||||| || 
Sbjct: 32  tcattctgcttctccattgccatcaccaaagctttcttcactacttcgtggttgaaaaaa 91

                                  
Query: 618 ggcatcccaaggtcacggataca 640
           |||||||| || || ||||||||
Sbjct: 92  ggcatccctagatcgcggataca 114
to top
>dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDC12
          Length = 81662

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 558   tcattctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaag 617
             ||||||||||||||||| ||||||||||  ||||||||||| ||||| |||||||| || 
Sbjct: 56990 tcattctgcttctccattgccatcaccaaagctttcttcactacttcgtggttgaaaaaa 56931

                                    
Query: 618   ggcatcccaaggtcacggataca 640
             |||||||| || || ||||||||
Sbjct: 56930 ggcatccctagatcgcggataca 56908
to top
>ref|NM_118613.1| Arabidopsis thaliana unknown protein AT4G24800 transcript variant
            AT4G24800.1 mRNA, complete cds
          Length = 2640

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 561  ttctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaagggc 620
            |||| |||||||||  |||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 2116 ttcttcttctccatacccatcaccagtgctttcttcaccacctcatggttgaagaaaggc 2057

              
Query: 621  at 622
            ||
Sbjct: 2056 at 2055



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 678  tcctcaaggagcttggagatcttgtcctttgcgtcttccac 718
            ||||| ||||| || || |||||||||||||| ||||||||
Sbjct: 1999 tcctccaggagatttgatatcttgtcctttgcatcttccac 1959
to top
>ref|NM_001036631.1| Arabidopsis thaliana unknown protein AT4G24800 transcript variant
            AT4G24800.2 mRNA, complete cds
          Length = 2728

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 561  ttctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaagggc 620
            |||| |||||||||  |||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 2204 ttcttcttctccatacccatcaccagtgctttcttcaccacctcatggttgaagaaaggc 2145

              
Query: 621  at 622
            ||
Sbjct: 2144 at 2143



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 678  tcctcaaggagcttggagatcttgtcctttgcgtcttccac 718
            ||||| ||||| || || |||||||||||||| ||||||||
Sbjct: 2087 tcctccaggagatttgatatcttgtcctttgcatcttccac 2047
to top
>emb|AL161562.2|ATCHRIV62 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62
          Length = 197070

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 561   ttctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaagggc 620
             |||| |||||||||  |||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 58979 ttcttcttctccatacccatcaccagtgctttcttcaccacctcatggttgaagaaaggc 58920

               
Query: 621   at 622
             ||
Sbjct: 58919 at 58918



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 678   tcctcaaggagcttggagatcttgtcctttgcgtcttccac 718
             ||||| ||||| || || |||||||||||||| ||||||||
Sbjct: 58862 tcctccaggagatttgatatcttgtcctttgcatcttccac 58822
to top
>emb|AL049657.1|ATF6I7 Arabidopsis thaliana DNA chromosome 4, BAC clone  F6I7 (ESSA project)
          Length = 95185

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 561   ttctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaagggc 620
             |||| |||||||||  |||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 29555 ttcttcttctccatacccatcaccagtgctttcttcaccacctcatggttgaagaaaggc 29496

               
Query: 621   at 622
             ||
Sbjct: 29495 at 29494



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 678   tcctcaaggagcttggagatcttgtcctttgcgtcttccac 718
             ||||| ||||| || || |||||||||||||| ||||||||
Sbjct: 29438 tcctccaggagatttgatatcttgtcctttgcatcttccac 29398
to top
>gb|AY124878.1| Arabidopsis thaliana AT4g24800/F6I7_10 mRNA, complete cds
          Length = 2109

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 561  ttctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaagggc 620
            |||| |||||||||  |||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 1880 ttcttcttctccatacccatcaccagtgctttcttcaccacctcatggttgaagaaaggc 1821

              
Query: 621  at 622
            ||
Sbjct: 1820 at 1819



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 678  tcctcaaggagcttggagatcttgtcctttgcgtcttccac 718
            ||||| ||||| || || |||||||||||||| ||||||||
Sbjct: 1763 tcctccaggagatttgatatcttgtcctttgcatcttccac 1723
to top
>gb|AY062102.1| Arabidopsis thaliana AT4g24800/F6I7_10 mRNA, complete cds
          Length = 2641

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 561  ttctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaagggc 620
            |||| |||||||||  |||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 2117 ttcttcttctccatacccatcaccagtgctttcttcaccacctcatggttgaagaaaggc 2058

              
Query: 621  at 622
            ||
Sbjct: 2057 at 2056



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 678  tcctcaaggagcttggagatcttgtcctttgcgtcttccac 718
            ||||| ||||| || || |||||||||||||| ||||||||
Sbjct: 2000 tcctccaggagatttgatatcttgtcctttgcatcttccac 1960
to top
>dbj|AK221703.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
            clone: RAFL15-48-P09
          Length = 2539

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 561  ttctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaagggc 620
            |||| |||||||||  |||||||||| |||||||||||||| |||||||||||||| |||
Sbjct: 2054 ttcttcttctccatacccatcaccagtgctttcttcaccacctcatggttgaagaaaggc 1995

              
Query: 621  at 622
            ||
Sbjct: 1994 at 1993



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 678  tcctcaaggagcttggagatcttgtcctttgcgtcttccac 718
            ||||| ||||| || || |||||||||||||| ||||||||
Sbjct: 1937 tcctccaggagatttgatatcttgtcctttgcatcttccac 1897
to top
>gb|BT018954.1| Zea mays clone Contig146.F mRNA sequence
          Length = 1057

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                       
Query: 558 tcattctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaag 617
           ||||||| ||||||||| |||||||| ||||| ||||| || ||||||||||||||||| 
Sbjct: 565 tcattcttcttctccattgccatcacgagcgccttcttgacaacttcatggttgaagaaa 506

                               
Query: 618 ggcatcccaaggtcacggat 637
           | ||| || || ||||||||
Sbjct: 505 gacatacccagctcacggat 486



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 489 ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
           ||||||||||||||||||||||| | ||| || ||  ||||||||||||
Sbjct: 631 ttggtcatctggttgatggttatgatcccttcaccaaagcactcctgca 583
to top
>gb|AY104255.1| Zea mays PCO124332 mRNA sequence
          Length = 1019

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 561 ttctgcttctccatcgccatcaccagcgctttcttcaccacttcatggttgaagaagggc 620
           |||| ||||||||| |||||||| ||||| ||||| || ||||||||||||||||| | |
Sbjct: 528 ttcttcttctccattgccatcacgagcgccttcttgacaacttcatggttgaagaaagac 469

                            
Query: 621 atcccaaggtcacggat 637
           || || || ||||||||
Sbjct: 468 atacccagctcacggat 452



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 489 ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
           ||||||||||||||||||||||| | ||| || ||  ||||||||||||
Sbjct: 597 ttggtcatctggttgatggttatgatcccttcaccaaagcactcctgca 549
to top
>ref|NM_187687.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1908

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 581  caccagcgctttcttcaccacttcatggttgaagaagggcatccc 625
            ||||||||| ||||||||||| || |||| |||||| ||||||||
Sbjct: 1671 caccagcgccttcttcaccacctcgtggtggaagaatggcatccc 1627
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                            
Query: 581     caccagcgctttcttcaccacttcatggttgaagaagggcatccc 625
               ||||||||| ||||||||||| || |||| |||||| ||||||||
Sbjct: 6361706 caccagcgccttcttcaccacctcgtggtggaagaatggcatccc 6361750
to top
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
             complete sequence
          Length = 146568

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 581   caccagcgctttcttcaccacttcatggttgaagaagggcatccc 625
             ||||||||| ||||||||||| || |||| |||||| ||||||||
Sbjct: 41832 caccagcgccttcttcaccacctcgtggtggaagaatggcatccc 41876
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                            
Query: 581     caccagcgctttcttcaccacttcatggttgaagaagggcatccc 625
               ||||||||| ||||||||||| || |||| |||||| ||||||||
Sbjct: 6360919 caccagcgccttcttcaccacctcgtggtggaagaatggcatccc 6360963
to top
>dbj|AK070688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023057E15, full
            insert sequence
          Length = 2588

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 581  caccagcgctttcttcaccacttcatggttgaagaagggcatccc 625
            ||||||||| ||||||||||| || |||| |||||| ||||||||
Sbjct: 1974 caccagcgccttcttcaccacctcgtggtggaagaatggcatccc 1930
to top
>gb|BC070577.1| Xenopus laevis hypothetical protein MGC81066, mRNA (cDNA clone
           MGC:81066 IMAGE:6316522), complete cds
          Length = 3608

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 320 ttcttcaagcttagccgtctgt 341
           ||||||||||||||||||||||
Sbjct: 796 ttcttcaagcttagccgtctgt 817
to top
>ref|XM_479828.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2362

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 489  ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
            |||||||||||||||||||| || | ||| || ||  ||||||||||||
Sbjct: 2189 ttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgca 2141
to top
>gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosome 1, complete sequence
          Length = 167927

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 92     catcctgaactgaaagccatg 112
              |||||||||||||||||||||
Sbjct: 103629 catcctgaactgaaagccatg 103649
to top
>ref|XM_757637.1| Theileria parva strain Muguga hypothetical protein (TP03_0915)
           partial mRNA
          Length = 2049

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 179 gtcacggaccaatacacccaa 199
           |||||||||||||||||||||
Sbjct: 418 gtcacggaccaatacacccaa 438
to top
>ref|XM_757625.1| Theileria parva strain Muguga chromosome 3 hypothetical protein
           (TP03_0927) partial mRNA
          Length = 2049

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 179 gtcacggaccaatacacccaa 199
           |||||||||||||||||||||
Sbjct: 418 gtcacggaccaatacacccaa 438
to top
>emb|AL928651.13| Mouse DNA sequence from clone RP23-167A19 on chromosome 4 Contains a
             3-hydroxyisobutyrate dehydrogenase, mitochondrial
             precursor (Hibadh) pseudogene and a CpG island, complete
             sequence
          Length = 157883

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 239   cagaaaagactaggaacagaagaaa 263
             ||||| |||||||||||||||||||
Sbjct: 40882 cagaacagactaggaacagaagaaa 40906
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 489     ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
               |||||||||||||||||||| || | ||| || ||  ||||||||||||
Sbjct: 1115936 ttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgca 1115984
to top
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1203H11
          Length = 156561

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 489   ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
             |||||||||||||||||||| || | ||| || ||  ||||||||||||
Sbjct: 29173 ttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgca 29221
to top
>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1005_B05
          Length = 144799

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                               
Query: 489    ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
              |||||||||||||||||||| || | ||| || ||  ||||||||||||
Sbjct: 144463 ttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgca 144511
to top
>dbj|AK104476.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F02, full
           insert sequence
          Length = 995

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 489 ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
           |||||||||||||||||||| || | ||| || ||  ||||||||||||
Sbjct: 486 ttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgca 438
to top
>dbj|AK102447.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093O03, full
            insert sequence
          Length = 2790

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 489  ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
            |||||||||||||||||||| || | ||| || ||  ||||||||||||
Sbjct: 2189 ttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgca 2141
to top
>dbj|AK067413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100H24, full
            insert sequence
          Length = 2320

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 489  ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
            |||||||||||||||||||| || | ||| || ||  ||||||||||||
Sbjct: 1806 ttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgca 1758
to top
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
             hypothetical protein, putative NAM protein, putative
             cis-zeatin O-glucosyltransferases, putative small nuclear
             ribonucleoprotein, putative cis-zeatin
             O-glucosyltransferase, putative glutathione peroxidase,
             putative copper-exporting ATPases, putative
             serine/threonine dehydratase, and putative actin
             depolymerizing factor genes, complete cds; and
             hypothetical protein gene, partial cds
          Length = 157237

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 648   gcttccttcaggtccccgccg 668
             |||||||||||||||||||||
Sbjct: 53687 gcttccttcaggtccccgccg 53707
to top
>gb|AC153644.3| Mus musculus BAC clone RP24-531A1 from 1, complete sequence
          Length = 166988

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 92   catcctgaactgaaagccatg 112
            |||||||||||||||||||||
Sbjct: 3686 catcctgaactgaaagccatg 3706
to top
>dbj|AK060858.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F06, full
           insert sequence
          Length = 995

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 489 ttggtcatctggttgatggttatcagcccctccccggagcactcctgca 537
           |||||||||||||||||||| || | ||| || ||  ||||||||||||
Sbjct: 486 ttggtcatctggttgatggtgatgatcccttcaccaaagcactcctgca 438
to top
>ref|XM_529073.1| PREDICTED: Pan troglodytes similar to TGF beta-inducible nuclear
           protein 1; L-name related protein (LOC473700), mRNA
          Length = 561

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 330 acatcctgaactgaaagcca 349
to top
>ref|XM_517704.1| PREDICTED: Pan troglodytes similar to TGF beta-inducible nuclear
           protein 1 (Hairy cell leukemia protein 1) (HUSSY-29)
           (LOC461806), mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 642 acatcctgaactgaaagcca 661
to top
>ref|NM_001034546.1| Bos taurus similar to TGF beta-inducible nuclear protein 1 (L-name
           related LNR42) (MGC128494), mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 666 acatcctgaactgaaagcca 685
to top
>gb|AC105259.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B04,
             complete sequence
          Length = 95383

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 603   tcatggttgaagaagggcat 622
             ||||||||||||||||||||
Sbjct: 81267 tcatggttgaagaagggcat 81248
to top
>ref|XM_587457.2| PREDICTED: Bos taurus similar to putative secretory pathway
           Ca-ATPase SPCA2 (LOC510329), mRNA
          Length = 3147

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 gggaagagctcagggcaggg 363
           ||||||||||||||||||||
Sbjct: 53  gggaagagctcagggcaggg 34
to top
>gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, complete sequence
          Length = 160219

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 343    ggggaagagctcagggcagggagg 366
              |||||||||||| |||||||||||
Sbjct: 139225 ggggaagagctctgggcagggagg 139202
to top
>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence
          Length = 180335

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 343   ggggaagagctcagggcagggagg 366
             |||||||||||| |||||||||||
Sbjct: 58910 ggggaagagctctgggcagggagg 58933
to top
>gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, complete sequence
          Length = 202661

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 343    ggggaagagctcagggcagggagg 366
              |||||||||||| |||||||||||
Sbjct: 153665 ggggaagagctctgggcagggagg 153688
to top
>gb|AC155711.14| Mus musculus 10 BAC RP24-189K8 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 183897

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  cttctccatcgccatcacca 585
            ||||||||||||||||||||
Sbjct: 4993 cttctccatcgccatcacca 5012
to top
>emb|CR792425.6| Zebrafish DNA sequence from clone DKEY-81N9 in linkage group 2, complete
              sequence
          Length = 168311

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    gctacttcaaaacaactcca 136
              ||||||||||||||||||||
Sbjct: 163271 gctacttcaaaacaactcca 163290
to top
>gb|BC062441.1| Homo sapiens cDNA clone IMAGE:6621304, partial cds
          Length = 706

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 343 ggggaagagctcagggcagggagg 366
           |||||||||||| |||||||||||
Sbjct: 351 ggggaagagctctgggcagggagg 328
to top
>emb|CR547121.11| Zebrafish DNA sequence from clone DKEY-118G10 in linkage group 8,
             complete sequence
          Length = 76347

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 518   ctccccggagcactcctgca 537
             ||||||||||||||||||||
Sbjct: 42271 ctccccggagcactcctgca 42252
to top
>emb|Z73417.1|HSU131B10 Human DNA sequence from clone LL0XNC01-131B10 on chromosome X Contains
             a novel gene similar to McLeod syndrome-associated, Kell
             blood group protein; membrane transport protein
             (LOC347425), a TGF beta-inducible nuclear protein 1
             (TINP1) pseudogene and one CpG island, complete sequence
          Length = 37650

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    acatcctgaactgaaagcca 110
             ||||||||||||||||||||
Sbjct: 29377 acatcctgaactgaaagcca 29358
to top
>emb|Z70226.1|HSV1077H7 Human DNA sequence from clone GHc-1077H7 on chromosome X Contains part
             of the NXF2 gene for nuclear RNA export factor 2 and a
             preferentially expressed antigen in melanoma (PRAME)
             pseudogene, complete sequence
          Length = 32374

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 343   ggggaagagctcagggcagggagg 366
             |||||||||||| |||||||||||
Sbjct: 28009 ggggaagagctctgggcagggagg 27986
to top
>emb|AL590396.13| Human DNA sequence from clone RP11-193H5 on chromosome 1 Contains the
             3' end of a novel gene (LOC401987), a actin pseudogene, a
             cytochrome b (MTCYB) pseudogene, a NADH dehydrogenase 6
             (MTND6) pseudogene and a NADH dehydrogenase 5 (MTND5)
             pseudogene, complete sequence
          Length = 122108

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   aggaacagaagaaaaagaag 269
             ||||||||||||||||||||
Sbjct: 67746 aggaacagaagaaaaagaag 67765
to top
>emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chromosome X, complete
             sequence
          Length = 158828

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 343   ggggaagagctcagggcagggagg 366
             |||||||||||| |||||||||||
Sbjct: 95158 ggggaagagctctgggcagggagg 95181
to top
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 673    tgtactcctcaaggagcttggaga 696
              |||||||||||||||||| |||||
Sbjct: 346913 tgtactcctcaaggagctgggaga 346936
to top
>gb|AC153517.8| Mus musculus 10 BAC RP23-22E18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 203981

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 566    cttctccatcgccatcacca 585
              ||||||||||||||||||||
Sbjct: 109026 cttctccatcgccatcacca 109007
to top
>gb|BC005288.1| Homo sapiens TGF beta-inducible nuclear protein 1, mRNA (cDNA clone
           MGC:12345 IMAGE:3683720), complete cds
          Length = 1052

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 665 acatcctgaactgaaagcca 684
to top
>gb|BC104563.1| Bos taurus similar to TGF beta-inducible nuclear protein 1 (L-name
           related LNR42), mRNA (cDNA clone MGC:128494
           IMAGE:7984598), complete cds
          Length = 1173

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 666 acatcctgaactgaaagcca 685
to top
>emb|CR620162.1| full-length cDNA clone CS0DB009YD21 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 1012

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 649 acatcctgaactgaaagcca 668
to top
>emb|CR614877.1| full-length cDNA clone CS0DB002YH16 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 950

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 660 acatcctgaactgaaagcca 679
to top
>emb|CR613056.1| full-length cDNA clone CS0DB004YN05 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 990

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 653 acatcctgaactgaaagcca 672
to top
>emb|CR600412.1| full-length cDNA clone CS0DI025YI23 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 996

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 628 acatcctgaactgaaagcca 647
to top
>gb|AC092793.5| Homo sapiens 12p BAC RP11-74N9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 76000

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   aggaacagaagaaaaagaag 269
             ||||||||||||||||||||
Sbjct: 73254 aggaacagaagaaaaagaag 73273
to top
>gb|AC097504.3| Homo sapiens BAC clone RP11-362F19 from 4, complete sequence
          Length = 186215

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 515    cccctccccggagcactcctgcaa 538
              ||||||||| ||||||||||||||
Sbjct: 115510 cccctccccagagcactcctgcaa 115487
to top
>emb|AL953914.11| Zebrafish DNA sequence from clone CH211-235I18 in linkage group 8,
             complete sequence
          Length = 151737

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   ctccccggagcactcctgca 537
             ||||||||||||||||||||
Sbjct: 83889 ctccccggagcactcctgca 83908
to top
>gb|AC093214.2| Homo sapiens chromosome 5 clone CTD-2060C23, complete sequence
          Length = 148327

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    acatcctgaactgaaagcca 110
             ||||||||||||||||||||
Sbjct: 89320 acatcctgaactgaaagcca 89339
to top
>gb|AC016594.7| Homo sapiens chromosome 5 clone CTD-2010O3, complete sequence
          Length = 146235

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    acatcctgaactgaaagcca 110
             ||||||||||||||||||||
Sbjct: 57698 acatcctgaactgaaagcca 57717
to top
>gb|AF372458.1|AF372458 Homo sapiens hairy cell leukemia protein 1 mRNA, complete cds
          Length = 1042

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 647 acatcctgaactgaaagcca 666
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 568     tctccatcgccatcaccagc 587
               ||||||||||||||||||||
Sbjct: 4370517 tctccatcgccatcaccagc 4370498
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 603     tcatggttgaagaagggcat 622
               ||||||||||||||||||||
Sbjct: 8502997 tcatggttgaagaagggcat 8502978
to top
>gb|AC145068.8| Mus musculus chromosome 8, clone RP23-197G5, complete sequence
          Length = 195178

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     aaagaccaataagctgtcca 87
              ||||||||||||||||||||
Sbjct: 125799 aaagaccaataagctgtcca 125818
to top
>ref|NM_014886.2| Homo sapiens TGF beta-inducible nuclear protein 1 (TINP1), mRNA
          Length = 1105

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 636 acatcctgaactgaaagcca 655
to top
>gb|AF077615.1|AF077615 Homo sapiens TGF beta inducible nuclear protein TINP1 (TINP1) mRNA,
           complete cds
          Length = 1105

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 636 acatcctgaactgaaagcca 655
to top
>gb|AC092641.2| Homo sapiens BAC clone RP11-389F18 from 2, complete sequence
          Length = 219175

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    acatcctgaactgaaagcca 110
             ||||||||||||||||||||
Sbjct: 48054 acatcctgaactgaaagcca 48073
to top
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1279D09
          Length = 134793

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 568   tctccatcgccatcaccagc 587
             ||||||||||||||||||||
Sbjct: 73335 tctccatcgccatcaccagc 73316
to top
>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tgtccatttacatcctgaac 101
             ||||||||||||||||||||
Sbjct: 45508 tgtccatttacatcctgaac 45527
to top
>emb|AJ012409.1|HSA012409 Homo sapiens mRNA for hypothetical protein, clone YR-29
          Length = 1024

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 634 acatcctgaactgaaagcca 653
to top
>emb|CR974440.6| Zebrafish DNA sequence from clone CH73-78M16 in linkage group 22,
              complete sequence
          Length = 123466

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    gctacttcaaaacaactcca 136
              ||||||||||||||||||||
Sbjct: 103726 gctacttcaaaacaactcca 103745
to top
>gb|AY443419.1| Homo sapiens TGF-beta inducible nuclear protein (CDK105) mRNA,
           complete cds
          Length = 783

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  acatcctgaactgaaagcca 110
           ||||||||||||||||||||
Sbjct: 552 acatcctgaactgaaagcca 571
to top
>gb|AY141876.1| Triticum aestivum cultivar TAM104R gag polyprotein mRNA, complete
           cds; and unknown mRNAs
          Length = 1290

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 590 tttcttcaccacttcatggt 609
           ||||||||||||||||||||
Sbjct: 92  tttcttcaccacttcatggt 73


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,511,848
Number of Sequences: 3902068
Number of extensions: 6511848
Number of successful extensions: 129602
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129122
Number of HSP's gapped (non-prelim): 479
length of query: 718
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 695
effective length of database: 17,143,297,704
effective search space: 11914591904280
effective search space used: 11914591904280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top