ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ606029.1| Triticum aestivum partial mRNA for putative ripe... 603 e-169
2dbj|AK103593.1| Oryza sativa (japonica cultivar-group) cDNA clon... 260 6e-66
3ref|NM_189475.1| Oryza sativa (japonica cultivar-group), predic... 208 2e-50
4gb|AY105377.1| Zea mays PCO061803 mRNA sequence 153 1e-33
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 137 6e-29
6dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic D... 137 6e-29
7dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic D... 137 6e-29
8gb|AY106832.1| Zea mays PCO074808 mRNA sequence 48 0.042
9emb|AL928957.9| Mouse DNA sequence from clone RP23-75E19 on chro... 46 0.16
10gb|AC113168.2| Homo sapiens chromosome 3 clone RP11-268B23, comp... 44 0.65
11gb|AC112220.2| Homo sapiens chromosome 3 clone RP11-10C24, compl... 44 0.65
12gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 ma... 42 2.6
13ref|NM_008309.2| Mus musculus 5-hydroxytryptamine (serotonin) re... 42 2.6
14emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on ch... 42 2.6
15gb|AC182734.3| Pan troglodytes BAC clone CH251-356H17 from chrom... 42 2.6
16dbj|AK082016.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 2.6
17gb|AC098800.3| Homo sapiens BAC clone RP11-666P13 from 2, comple... 42 2.6
18gb|AC141644.6| Mus musculus BAC clone RP23-115F21 from chromosom... 42 2.6
19emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chro... 42 2.6

>emb|AJ606029.1| Triticum aestivum partial mRNA for putative ripening-related
           protein (grip21 gene)
          Length = 439

 Score =  603 bits (304), Expect = e-169
 Identities = 379/404 (93%)
 Strand = Plus / Minus

                                                                       
Query: 165 ttcatgaggatttcacgcgatcaccgatgtctcgattccgactttgctcgagttcctgac 224
           |||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 405 ttcacgaggattttacgcgatcactgatgtctcgattccaactttgctcgagttcctgac 346

                                                                       
Query: 225 gtcctcgtccttcacagcctccacccatagttcaggaaacgcctccttcatgttgtgaag 284
            ||||| |||||||||||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct: 345 atcctcatccttcacagcctccacccacagttccggaaatgcttccttcatgttgtgaag 286

                                                                       
Query: 285 gctctccaaggcatggtcagcgcctttaatcctttcagaggttccaaccaggacagtgtg 344
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 285 gctctccaaggcatggtcagcacctttaatcctttcagaagttccaaccaggacagtgtg 226

                                                                       
Query: 345 cattccaatctgcttcccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagt 404
           |||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct: 225 cattccgatctgcttcccagcttggatgttcctgacgctgtcatcgaaaaatatagtagt 166

                                                                       
Query: 405 ctgaggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgca 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 165 ctgaggattgatgtcggcaagcttgagggcatgcagcattgcatctatgtttggtttgca 106

                                                                       
Query: 465 caggattggtgatcttggcagctcaaccccaggctcaggatgagccaggtgcttcattat 524
           |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 105 caggattggtgaccttggcagctcaaccccaggctctggatgagccaggtgcttcactat 46

                                                       
Query: 525 atcgaagatctcaactttgtcagacagcacaggagtgggcgatg 568
           |||||||||||| |||||||  ||  ||||||||||||||||||
Sbjct: 45  atcgaagatctcgactttgttggatggcacaggagtgggcgatg 2



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>dbj|AK103593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133D12, full
            insert sequence
          Length = 1303

 Score =  260 bits (131), Expect = 6e-66
 Identities = 293/347 (84%)
 Strand = Plus / Minus

                                                                        
Query: 181  gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240
            |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 1092 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 1033

                                                                        
Query: 241  gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300
            || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 1032 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 973

                                                                        
Query: 301  tcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgcttc 360
            ||||| || || || |||||||| ||||||||||||||||| | |||||| ||  |||||
Sbjct: 972  tcagcaccctttattctttcagaagttccaaccaggacagtatacattcctattagcttc 913

                                                                        
Query: 361  ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatgtcg 420
             | ||||| ||||||||| |||||||||| || ||||| |  ||||  |||||||||  |
Sbjct: 912  gcagcctggatgttcctggcgctgtcatcaaacaatatcgatgtcttcggattgatggag 853

                                                                        
Query: 421  gcaagcttgagggcatgcagcattgcatctatgttcggtttgcacaggattggtgatctt 480
            |||| |||||| || ||| |||| |||||||| || || |||||||||||||| ||  ||
Sbjct: 852  gcaaccttgagagcttgccgcatggcatctatatttggcttgcacaggattggcgacttt 793

                                                           
Query: 481  ggcagctcaaccccaggctcaggatgagccaggtgcttcattatatc 527
            || || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 792  ggtagttcaaccccaggctctggatgagccagatgcttcattatatc 746



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 92/113 (81%)
 Strand = Plus / Minus

                                                                       
Query: 571 gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630
           ||||||| |||||||||||||| ||| |  || ||||| || || ||||| |||||||| 
Sbjct: 702 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 643

                                                                
Query: 631 atggccctcgaagcatggagcctgtcaccgttcgtgaacacgagtttgcggat 683
           | |||||| |||||||| |  |||||||| || ||||| || | |||||||||
Sbjct: 642 agggcccttgaagcatgaattctgtcaccatttgtgaagacaactttgcggat 590



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>ref|NM_189475.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 777

 Score =  208 bits (105), Expect = 2e-50
 Identities = 246/293 (83%)
 Strand = Plus / Minus

                                                                       
Query: 181 gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240
           |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 773 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 714

                                                                       
Query: 241 gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300
           || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 713 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 654

                                                                       
Query: 301 tcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgcttc 360
           ||||| || || || |||||||| ||||||||||||||||| | |||||| ||  |||||
Sbjct: 653 tcagcaccctttattctttcagaagttccaaccaggacagtatacattcctattagcttc 594

                                                                       
Query: 361 ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatgtcg 420
            | ||||| ||||||||| |||||||||| || ||||| |  ||||  |||||||||  |
Sbjct: 593 gcagcctggatgttcctggcgctgtcatcaaacaatatcgatgtcttcggattgatggag 534

                                                                
Query: 421 gcaagcttgagggcatgcagcattgcatctatgttcggtttgcacaggattgg 473
           |||| |||||| || ||| |||| |||||||| || || ||||||||||||||
Sbjct: 533 gcaaccttgagagcttgccgcatggcatctatatttggcttgcacaggattgg 481



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                       
Query: 571 gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630
           ||||||| |||||||||||||| ||| |  || ||||| || || ||||| |||||||| 
Sbjct: 476 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 417

                                                 
Query: 631 atggccctcgaagcatggagcctgtcaccgttcgtgaa 668
           | |||||| |||||||| |  |||||||| || |||||
Sbjct: 416 agggcccttgaagcatgaattctgtcaccatttgtgaa 379



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>gb|AY105377.1| Zea mays PCO061803 mRNA sequence
          Length = 679

 Score =  153 bits (77), Expect = 1e-33
 Identities = 292/361 (80%), Gaps = 2/361 (0%)
 Strand = Plus / Minus

                                                                       
Query: 179 acgcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttca 238
           |||||||||| ||||||||||||||| |||||||||| | ||| || || || |||||| 
Sbjct: 543 acgcgatcacagatgtctcgattccggctttgctcgaat-cctcacatcttcatccttct 485

                                                                       
Query: 239 cagcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcat 298
           |||| ||| |||| || || || |  || |||||||||||||| ||||| ||||||||||
Sbjct: 484 cagcttcctcccacagctccggcagtgcttccttcatgttgtggaggctttccaaggcat 425

                                                                       
Query: 299 ggtcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgct 358
           ||||||| || ||  |||  ||||| |||||||||||||||||   ||||||||| ||||
Sbjct: 424 ggtcagcaccctttttccgctcagatgttccaaccaggacagtacacattccaatttgct 365

                                                                       
Query: 359 tc-ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatg 417
           |  || || |  |||||||||| |||||||||||| |||||||| ||||| ||||| |||
Sbjct: 364 ttgccagcttcaatgttcctgaagctgtcatcgaacaatatagttgtctgtggattaatg 305

                                                                       
Query: 418 tcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacaggattggtgat 477
             ||| | |||||| || |||||||| || ||  |   ||||||||| ||||| ||||||
Sbjct: 304 gaggcgaccttgagagcctgcagcatggcctcccttgacggtttgcataggataggtgat 245

                                                                       
Query: 478 cttggcagctcaaccccaggctcaggatgagccaggtgcttcattatatcgaagatctca 537
            |||| ||||  ||| | ||||  ||||||||||| |||||||||| ||| ||||| |||
Sbjct: 244 tttggtagctgcaccgcgggctgtggatgagccagatgcttcattagatcaaagatttca 185

            
Query: 538 a 538
           |
Sbjct: 184 a 184



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 119/143 (83%), Gaps = 1/143 (0%)
 Strand = Plus / Minus

                                                                       
Query: 565 gatgccgggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagc 624
           |||| |||||||| ||||||||||||||  || || ||||| || || || || || |||
Sbjct: 154 gatgtcgggttcagtgtctcaaagcacacgactccttcgaaacaatcctcaatgccaagc 95

                                                                       
Query: 625 ctcttcatggccctcgaagcatggagcctgtcaccgttcgtgaacacgagtttgcggatg 684
           ||||| | |||||| ||||||||    ||||||||||| |||||||| |||||||| |||
Sbjct: 94  ctcttgagggcccttgaagcatgtgttctgtcaccgtttgtgaacacaagtttgcgaatg 35

                                  
Query: 685 ggtaggctgaggaaggatgttcc 707
           |||| ||||||| ||||||||||
Sbjct: 34  ggtaagctgagg-aggatgttcc 13



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  137 bits (69), Expect = 6e-29
 Identities = 132/153 (86%)
 Strand = Plus / Minus

                                                                            
Query: 181      gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240
                |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 42948775 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 42948716

                                                                            
Query: 241      gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300
                || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 42948715 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 42948656

                                                 
Query: 301      tcagcgcctttaatcctttcagaggttccaacc 333
                ||||| || || || |||||||| |||||||||
Sbjct: 42948655 tcagcaccctttattctttcagaagttccaacc 42948623



 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                            
Query: 409      ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 468
                |||||||||  ||||| |||||| || ||| |||| |||||||| || || |||||||||
Sbjct: 42948363 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 42948304

                                                                           
Query: 469      attggtgatcttggcagctcaaccccaggctcaggatgagccaggtgcttcattatatc 527
                ||||| ||  |||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 42948303 attggcgactttggtagttcaaccccaggctctggatgagccagatgcttcattatatc 42948245



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                            
Query: 571      gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630
                ||||||| |||||||||||||| ||| |  || ||||| || || ||||| |||||||| 
Sbjct: 42948201 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 42948142

                                                      
Query: 631      atggccctcgaagcatggagcctgtcaccgttcgtgaa 668
                | |||||| |||||||| |  |||||||| || |||||
Sbjct: 42948141 agggcccttgaagcatgaattctgtcaccatttgtgaa 42948104



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                            
Query: 331      accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 390
                ||||||||||| | |||||| ||  ||||| | ||||| ||||||||| |||||||||| 
Sbjct: 42948537 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 42948478

                        
Query: 391      aaaaatat 398
                || |||||
Sbjct: 42948477 aacaatat 42948470



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>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698H10
          Length = 153449

 Score =  137 bits (69), Expect = 6e-29
 Identities = 132/153 (86%)
 Strand = Plus / Minus

                                                                         
Query: 181   gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240
             |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 49654 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 49595

                                                                         
Query: 241   gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300
             || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 49594 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 49535

                                              
Query: 301   tcagcgcctttaatcctttcagaggttccaacc 333
             ||||| || || || |||||||| |||||||||
Sbjct: 49534 tcagcaccctttattctttcagaagttccaacc 49502



 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                         
Query: 409   ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 468
             |||||||||  ||||| |||||| || ||| |||| |||||||| || || |||||||||
Sbjct: 49242 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 49183

                                                                        
Query: 469   attggtgatcttggcagctcaaccccaggctcaggatgagccaggtgcttcattatatc 527
             ||||| ||  |||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 49182 attggcgactttggtagttcaaccccaggctctggatgagccagatgcttcattatatc 49124



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                         
Query: 571   gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630
             ||||||| |||||||||||||| ||| |  || ||||| || || ||||| |||||||| 
Sbjct: 49080 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 49021

                                                   
Query: 631   atggccctcgaagcatggagcctgtcaccgttcgtgaa 668
             | |||||| |||||||| |  |||||||| || |||||
Sbjct: 49020 agggcccttgaagcatgaattctgtcaccatttgtgaa 48983



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                         
Query: 331   accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 390
             ||||||||||| | |||||| ||  ||||| | ||||| ||||||||| |||||||||| 
Sbjct: 49416 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 49357

                     
Query: 391   aaaaatat 398
             || |||||
Sbjct: 49356 aacaatat 49349



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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0518C01
          Length = 173555

 Score =  137 bits (69), Expect = 6e-29
 Identities = 132/153 (86%)
 Strand = Plus / Minus

                                                                          
Query: 181    gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240
              |||||||| |||||||| |||||||||||||| || |||||||| ||||| |||||||||
Sbjct: 142509 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 142450

                                                                          
Query: 241    gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300
              || ||  |||| || ||||| || || |||||||||||||||||||| ||||| ||||||
Sbjct: 142449 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 142390

                                               
Query: 301    tcagcgcctttaatcctttcagaggttccaacc 333
              ||||| || || || |||||||| |||||||||
Sbjct: 142389 tcagcaccctttattctttcagaagttccaacc 142357



 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                          
Query: 409    ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 468
              |||||||||  ||||| |||||| || ||| |||| |||||||| || || |||||||||
Sbjct: 142097 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 142038

                                                                         
Query: 469    attggtgatcttggcagctcaaccccaggctcaggatgagccaggtgcttcattatatc 527
              ||||| ||  |||| || |||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 142037 attggcgactttggtagttcaaccccaggctctggatgagccagatgcttcattatatc 141979



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                          
Query: 571    gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630
              ||||||| |||||||||||||| ||| |  || ||||| || || ||||| |||||||| 
Sbjct: 141935 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 141876

                                                    
Query: 631    atggccctcgaagcatggagcctgtcaccgttcgtgaa 668
              | |||||| |||||||| |  |||||||| || |||||
Sbjct: 141875 agggcccttgaagcatgaattctgtcaccatttgtgaa 141838



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                          
Query: 331    accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 390
              ||||||||||| | |||||| ||  ||||| | ||||| ||||||||| |||||||||| 
Sbjct: 142271 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 142212

                      
Query: 391    aaaaatat 398
              || |||||
Sbjct: 142211 aacaatat 142204



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>gb|AY106832.1| Zea mays PCO074808 mRNA sequence
          Length = 1378

 Score = 48.1 bits (24), Expect = 0.042
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 349 ccaatctgcttcccggcctgtatgttcctgacgctgtcatcgaa 392
           |||||||||||||||||||| ||||| |  |||||||| |||||
Sbjct: 836 ccaatctgcttcccggcctggatgttgcgtacgctgtcgtcgaa 793



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>emb|AL928957.9| Mouse DNA sequence from clone RP23-75E19 on chromosome 2, complete
            sequence
          Length = 110685

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 154  cccatgtgcacttcatgaggatt 176
            |||||||||||||||||||||||
Sbjct: 9000 cccatgtgcacttcatgaggatt 9022



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>gb|AC113168.2| Homo sapiens chromosome 3 clone RP11-268B23, complete sequence
          Length = 158868

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 2     atttatttatcttattacagtg 23
             ||||||||||||||||||||||
Sbjct: 77705 atttatttatcttattacagtg 77726



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>gb|AC112220.2| Homo sapiens chromosome 3 clone RP11-10C24, complete sequence
          Length = 152227

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2      atttatttatcttattacagtg 23
              ||||||||||||||||||||||
Sbjct: 102954 atttatttatcttattacagtg 102975



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>gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 map 6, complete sequence
          Length = 203032

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    aaaacataaggaaagtggtat 46
             |||||||||||||||||||||
Sbjct: 66916 aaaacataaggaaagtggtat 66936



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>ref|NM_008309.2| Mus musculus 5-hydroxytryptamine (serotonin) receptor 1D (Htr1d),
            mRNA
          Length = 2908

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 30   cataaggaaagtggtatcagt 50
            |||||||||||||||||||||
Sbjct: 2593 cataaggaaagtggtatcagt 2613



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>emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on chromosome Xq13.3-21.2
             Contains the 3' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase, complete sequence
          Length = 173760

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 687   taggctgaggaaggatgttcc 707
             |||||||||||||||||||||
Sbjct: 12576 taggctgaggaaggatgttcc 12556



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>gb|AC182734.3| Pan troglodytes BAC clone CH251-356H17 from chromosome 2, complete
              sequence
          Length = 209702

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 121    tgcatagactgcttctgataa 141
              |||||||||||||||||||||
Sbjct: 176976 tgcatagactgcttctgataa 176996



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>dbj|AK082016.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130095B09 product:5-HYDROXYTRYPTAMINE 1D
            RECEPTOR (5-HT-1D) (SEROTONIN RECEPTOR), full insert
            sequence
          Length = 2908

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 30   cataaggaaagtggtatcagt 50
            |||||||||||||||||||||
Sbjct: 2593 cataaggaaagtggtatcagt 2613



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>gb|AC098800.3| Homo sapiens BAC clone RP11-666P13 from 2, complete sequence
          Length = 142003

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 121   tgcatagactgcttctgataa 141
             |||||||||||||||||||||
Sbjct: 76216 tgcatagactgcttctgataa 76236



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>gb|AC141644.6| Mus musculus BAC clone RP23-115F21 from chromosome 6, complete sequence
          Length = 187643

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 26     aaaacataaggaaagtggtat 46
              |||||||||||||||||||||
Sbjct: 178064 aaaacataaggaaagtggtat 178084



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>emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chromosome 4, complete
              sequence
          Length = 202412

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     cataaggaaagtggtatcagt 50
              |||||||||||||||||||||
Sbjct: 107244 cataaggaaagtggtatcagt 107264


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,811,284
Number of Sequences: 3902068
Number of extensions: 5811284
Number of successful extensions: 115413
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115339
Number of HSP's gapped (non-prelim): 73
length of query: 738
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 715
effective length of database: 17,143,297,704
effective search space: 12257457858360
effective search space used: 12257457858360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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