Clone Name | rbasd27a17 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ606029.1| Triticum aestivum partial mRNA for putative ripening-related protein (grip21 gene) Length = 439 Score = 603 bits (304), Expect = e-169 Identities = 379/404 (93%) Strand = Plus / Minus Query: 165 ttcatgaggatttcacgcgatcaccgatgtctcgattccgactttgctcgagttcctgac 224 |||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||||| Sbjct: 405 ttcacgaggattttacgcgatcactgatgtctcgattccaactttgctcgagttcctgac 346 Query: 225 gtcctcgtccttcacagcctccacccatagttcaggaaacgcctccttcatgttgtgaag 284 ||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||| Sbjct: 345 atcctcatccttcacagcctccacccacagttccggaaatgcttccttcatgttgtgaag 286 Query: 285 gctctccaaggcatggtcagcgcctttaatcctttcagaggttccaaccaggacagtgtg 344 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 285 gctctccaaggcatggtcagcacctttaatcctttcagaagttccaaccaggacagtgtg 226 Query: 345 cattccaatctgcttcccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagt 404 |||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct: 225 cattccgatctgcttcccagcttggatgttcctgacgctgtcatcgaaaaatatagtagt 166 Query: 405 ctgaggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgca 464 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 165 ctgaggattgatgtcggcaagcttgagggcatgcagcattgcatctatgtttggtttgca 106 Query: 465 caggattggtgatcttggcagctcaaccccaggctcaggatgagccaggtgcttcattat 524 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct: 105 caggattggtgaccttggcagctcaaccccaggctctggatgagccaggtgcttcactat 46 Query: 525 atcgaagatctcaactttgtcagacagcacaggagtgggcgatg 568 |||||||||||| ||||||| || |||||||||||||||||| Sbjct: 45 atcgaagatctcgactttgttggatggcacaggagtgggcgatg 2
>dbj|AK103593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133D12, full insert sequence Length = 1303 Score = 260 bits (131), Expect = 6e-66 Identities = 293/347 (84%) Strand = Plus / Minus Query: 181 gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240 |||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||| Sbjct: 1092 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 1033 Query: 241 gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300 || || |||| || ||||| || || |||||||||||||||||||| ||||| |||||| Sbjct: 1032 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 973 Query: 301 tcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgcttc 360 ||||| || || || |||||||| ||||||||||||||||| | |||||| || ||||| Sbjct: 972 tcagcaccctttattctttcagaagttccaaccaggacagtatacattcctattagcttc 913 Query: 361 ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatgtcg 420 | ||||| ||||||||| |||||||||| || ||||| | |||| ||||||||| | Sbjct: 912 gcagcctggatgttcctggcgctgtcatcaaacaatatcgatgtcttcggattgatggag 853 Query: 421 gcaagcttgagggcatgcagcattgcatctatgttcggtttgcacaggattggtgatctt 480 |||| |||||| || ||| |||| |||||||| || || |||||||||||||| || || Sbjct: 852 gcaaccttgagagcttgccgcatggcatctatatttggcttgcacaggattggcgacttt 793 Query: 481 ggcagctcaaccccaggctcaggatgagccaggtgcttcattatatc 527 || || |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 792 ggtagttcaaccccaggctctggatgagccagatgcttcattatatc 746 Score = 58.0 bits (29), Expect = 4e-05 Identities = 92/113 (81%) Strand = Plus / Minus Query: 571 gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630 ||||||| |||||||||||||| ||| | || ||||| || || ||||| |||||||| Sbjct: 702 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 643 Query: 631 atggccctcgaagcatggagcctgtcaccgttcgtgaacacgagtttgcggat 683 | |||||| |||||||| | |||||||| || ||||| || | ||||||||| Sbjct: 642 agggcccttgaagcatgaattctgtcaccatttgtgaagacaactttgcggat 590
>ref|NM_189475.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 777 Score = 208 bits (105), Expect = 2e-50 Identities = 246/293 (83%) Strand = Plus / Minus Query: 181 gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240 |||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||| Sbjct: 773 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 714 Query: 241 gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300 || || |||| || ||||| || || |||||||||||||||||||| ||||| |||||| Sbjct: 713 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 654 Query: 301 tcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgcttc 360 ||||| || || || |||||||| ||||||||||||||||| | |||||| || ||||| Sbjct: 653 tcagcaccctttattctttcagaagttccaaccaggacagtatacattcctattagcttc 594 Query: 361 ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatgtcg 420 | ||||| ||||||||| |||||||||| || ||||| | |||| ||||||||| | Sbjct: 593 gcagcctggatgttcctggcgctgtcatcaaacaatatcgatgtcttcggattgatggag 534 Query: 421 gcaagcttgagggcatgcagcattgcatctatgttcggtttgcacaggattgg 473 |||| |||||| || ||| |||| |||||||| || || |||||||||||||| Sbjct: 533 gcaaccttgagagcttgccgcatggcatctatatttggcttgcacaggattgg 481 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 571 gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630 ||||||| |||||||||||||| ||| | || ||||| || || ||||| |||||||| Sbjct: 476 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 417 Query: 631 atggccctcgaagcatggagcctgtcaccgttcgtgaa 668 | |||||| |||||||| | |||||||| || ||||| Sbjct: 416 agggcccttgaagcatgaattctgtcaccatttgtgaa 379
>gb|AY105377.1| Zea mays PCO061803 mRNA sequence Length = 679 Score = 153 bits (77), Expect = 1e-33 Identities = 292/361 (80%), Gaps = 2/361 (0%) Strand = Plus / Minus Query: 179 acgcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttca 238 |||||||||| ||||||||||||||| |||||||||| | ||| || || || |||||| Sbjct: 543 acgcgatcacagatgtctcgattccggctttgctcgaat-cctcacatcttcatccttct 485 Query: 239 cagcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcat 298 |||| ||| |||| || || || | || |||||||||||||| ||||| |||||||||| Sbjct: 484 cagcttcctcccacagctccggcagtgcttccttcatgttgtggaggctttccaaggcat 425 Query: 299 ggtcagcgcctttaatcctttcagaggttccaaccaggacagtgtgcattccaatctgct 358 ||||||| || || ||| ||||| ||||||||||||||||| ||||||||| |||| Sbjct: 424 ggtcagcaccctttttccgctcagatgttccaaccaggacagtacacattccaatttgct 365 Query: 359 tc-ccggcctgtatgttcctgacgctgtcatcgaaaaatatagtagtctgaggattgatg 417 | || || | |||||||||| |||||||||||| |||||||| ||||| ||||| ||| Sbjct: 364 ttgccagcttcaatgttcctgaagctgtcatcgaacaatatagttgtctgtggattaatg 305 Query: 418 tcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacaggattggtgat 477 ||| | |||||| || |||||||| || || | ||||||||| ||||| |||||| Sbjct: 304 gaggcgaccttgagagcctgcagcatggcctcccttgacggtttgcataggataggtgat 245 Query: 478 cttggcagctcaaccccaggctcaggatgagccaggtgcttcattatatcgaagatctca 537 |||| |||| ||| | |||| ||||||||||| |||||||||| ||| ||||| ||| Sbjct: 244 tttggtagctgcaccgcgggctgtggatgagccagatgcttcattagatcaaagatttca 185 Query: 538 a 538 | Sbjct: 184 a 184 Score = 85.7 bits (43), Expect = 2e-13 Identities = 119/143 (83%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 565 gatgccgggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagc 624 |||| |||||||| |||||||||||||| || || ||||| || || || || || ||| Sbjct: 154 gatgtcgggttcagtgtctcaaagcacacgactccttcgaaacaatcctcaatgccaagc 95 Query: 625 ctcttcatggccctcgaagcatggagcctgtcaccgttcgtgaacacgagtttgcggatg 684 ||||| | |||||| |||||||| ||||||||||| |||||||| |||||||| ||| Sbjct: 94 ctcttgagggcccttgaagcatgtgttctgtcaccgtttgtgaacacaagtttgcgaatg 35 Query: 685 ggtaggctgaggaaggatgttcc 707 |||| ||||||| |||||||||| Sbjct: 34 ggtaagctgagg-aggatgttcc 13
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 137 bits (69), Expect = 6e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 181 gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240 |||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||| Sbjct: 42948775 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 42948716 Query: 241 gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300 || || |||| || ||||| || || |||||||||||||||||||| ||||| |||||| Sbjct: 42948715 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 42948656 Query: 301 tcagcgcctttaatcctttcagaggttccaacc 333 ||||| || || || |||||||| ||||||||| Sbjct: 42948655 tcagcaccctttattctttcagaagttccaacc 42948623 Score = 101 bits (51), Expect = 3e-18 Identities = 102/119 (85%) Strand = Plus / Minus Query: 409 ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 468 ||||||||| ||||| |||||| || ||| |||| |||||||| || || ||||||||| Sbjct: 42948363 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 42948304 Query: 469 attggtgatcttggcagctcaaccccaggctcaggatgagccaggtgcttcattatatc 527 ||||| || |||| || |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 42948303 attggcgactttggtagttcaaccccaggctctggatgagccagatgcttcattatatc 42948245 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 571 gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630 ||||||| |||||||||||||| ||| | || ||||| || || ||||| |||||||| Sbjct: 42948201 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 42948142 Query: 631 atggccctcgaagcatggagcctgtcaccgttcgtgaa 668 | |||||| |||||||| | |||||||| || ||||| Sbjct: 42948141 agggcccttgaagcatgaattctgtcaccatttgtgaa 42948104 Score = 48.1 bits (24), Expect = 0.042 Identities = 57/68 (83%) Strand = Plus / Minus Query: 331 accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 390 ||||||||||| | |||||| || ||||| | ||||| ||||||||| |||||||||| Sbjct: 42948537 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 42948478 Query: 391 aaaaatat 398 || ||||| Sbjct: 42948477 aacaatat 42948470
>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698H10 Length = 153449 Score = 137 bits (69), Expect = 6e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 181 gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240 |||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||| Sbjct: 49654 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 49595 Query: 241 gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300 || || |||| || ||||| || || |||||||||||||||||||| ||||| |||||| Sbjct: 49594 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 49535 Query: 301 tcagcgcctttaatcctttcagaggttccaacc 333 ||||| || || || |||||||| ||||||||| Sbjct: 49534 tcagcaccctttattctttcagaagttccaacc 49502 Score = 101 bits (51), Expect = 3e-18 Identities = 102/119 (85%) Strand = Plus / Minus Query: 409 ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 468 ||||||||| ||||| |||||| || ||| |||| |||||||| || || ||||||||| Sbjct: 49242 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 49183 Query: 469 attggtgatcttggcagctcaaccccaggctcaggatgagccaggtgcttcattatatc 527 ||||| || |||| || |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 49182 attggcgactttggtagttcaaccccaggctctggatgagccagatgcttcattatatc 49124 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 571 gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630 ||||||| |||||||||||||| ||| | || ||||| || || ||||| |||||||| Sbjct: 49080 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 49021 Query: 631 atggccctcgaagcatggagcctgtcaccgttcgtgaa 668 | |||||| |||||||| | |||||||| || ||||| Sbjct: 49020 agggcccttgaagcatgaattctgtcaccatttgtgaa 48983 Score = 48.1 bits (24), Expect = 0.042 Identities = 57/68 (83%) Strand = Plus / Minus Query: 331 accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 390 ||||||||||| | |||||| || ||||| | ||||| ||||||||| |||||||||| Sbjct: 49416 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 49357 Query: 391 aaaaatat 398 || ||||| Sbjct: 49356 aacaatat 49349
>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518C01 Length = 173555 Score = 137 bits (69), Expect = 6e-29 Identities = 132/153 (86%) Strand = Plus / Minus Query: 181 gcgatcaccgatgtctcgattccgactttgctcgagttcctgacgtcctcgtccttcaca 240 |||||||| |||||||| |||||||||||||| || |||||||| ||||| ||||||||| Sbjct: 142509 gcgatcacagatgtctcaattccgactttgcttgacttcctgacatcctcatccttcaca 142450 Query: 241 gcctccacccatagttcaggaaacgcctccttcatgttgtgaaggctctccaaggcatgg 300 || || |||| || ||||| || || |||||||||||||||||||| ||||| |||||| Sbjct: 142449 gcttcatcccacagctcaggcaatgcttccttcatgttgtgaaggctttccaacgcatgg 142390 Query: 301 tcagcgcctttaatcctttcagaggttccaacc 333 ||||| || || || |||||||| ||||||||| Sbjct: 142389 tcagcaccctttattctttcagaagttccaacc 142357 Score = 101 bits (51), Expect = 3e-18 Identities = 102/119 (85%) Strand = Plus / Minus Query: 409 ggattgatgtcggcaagcttgagggcatgcagcattgcatctatgttcggtttgcacagg 468 ||||||||| ||||| |||||| || ||| |||| |||||||| || || ||||||||| Sbjct: 142097 ggattgatggaggcaaccttgagagcttgccgcatggcatctatatttggcttgcacagg 142038 Query: 469 attggtgatcttggcagctcaaccccaggctcaggatgagccaggtgcttcattatatc 527 ||||| || |||| || |||||||||||||| ||||||||||| |||||||||||||| Sbjct: 142037 attggcgactttggtagttcaaccccaggctctggatgagccagatgcttcattatatc 141979 Score = 52.0 bits (26), Expect = 0.003 Identities = 80/98 (81%) Strand = Plus / Minus Query: 571 gggttcaatgtctcaaagcacagaaccccctcgaagcagtcatcgattccgagcctcttc 630 ||||||| |||||||||||||| ||| | || ||||| || || ||||| |||||||| Sbjct: 141935 gggttcagtgtctcaaagcacacaactctttcaaagcaatcttctattcctagcctcttg 141876 Query: 631 atggccctcgaagcatggagcctgtcaccgttcgtgaa 668 | |||||| |||||||| | |||||||| || ||||| Sbjct: 141875 agggcccttgaagcatgaattctgtcaccatttgtgaa 141838 Score = 48.1 bits (24), Expect = 0.042 Identities = 57/68 (83%) Strand = Plus / Minus Query: 331 accaggacagtgtgcattccaatctgcttcccggcctgtatgttcctgacgctgtcatcg 390 ||||||||||| | |||||| || ||||| | ||||| ||||||||| |||||||||| Sbjct: 142271 accaggacagtatacattcctattagcttcgcagcctggatgttcctggcgctgtcatca 142212 Query: 391 aaaaatat 398 || ||||| Sbjct: 142211 aacaatat 142204
>gb|AY106832.1| Zea mays PCO074808 mRNA sequence Length = 1378 Score = 48.1 bits (24), Expect = 0.042 Identities = 39/44 (88%) Strand = Plus / Minus Query: 349 ccaatctgcttcccggcctgtatgttcctgacgctgtcatcgaa 392 |||||||||||||||||||| ||||| | |||||||| ||||| Sbjct: 836 ccaatctgcttcccggcctggatgttgcgtacgctgtcgtcgaa 793
>emb|AL928957.9| Mouse DNA sequence from clone RP23-75E19 on chromosome 2, complete sequence Length = 110685 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 154 cccatgtgcacttcatgaggatt 176 ||||||||||||||||||||||| Sbjct: 9000 cccatgtgcacttcatgaggatt 9022
>gb|AC113168.2| Homo sapiens chromosome 3 clone RP11-268B23, complete sequence Length = 158868 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2 atttatttatcttattacagtg 23 |||||||||||||||||||||| Sbjct: 77705 atttatttatcttattacagtg 77726
>gb|AC112220.2| Homo sapiens chromosome 3 clone RP11-10C24, complete sequence Length = 152227 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2 atttatttatcttattacagtg 23 |||||||||||||||||||||| Sbjct: 102954 atttatttatcttattacagtg 102975
>gb|AC112139.31| Mus musculus strain C57BL/6J clone rp23-170m6 map 6, complete sequence Length = 203032 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 aaaacataaggaaagtggtat 46 ||||||||||||||||||||| Sbjct: 66916 aaaacataaggaaagtggtat 66936
>ref|NM_008309.2| Mus musculus 5-hydroxytryptamine (serotonin) receptor 1D (Htr1d), mRNA Length = 2908 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 cataaggaaagtggtatcagt 50 ||||||||||||||||||||| Sbjct: 2593 cataaggaaagtggtatcagt 2613
>emb|AL354653.26| Human DNA sequence from clone RP11-326A14 on chromosome Xq13.3-21.2 Contains the 3' end of the RPS6KA6 gene for ribosomal protein S6 kinase, complete sequence Length = 173760 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 687 taggctgaggaaggatgttcc 707 ||||||||||||||||||||| Sbjct: 12576 taggctgaggaaggatgttcc 12556
>gb|AC182734.3| Pan troglodytes BAC clone CH251-356H17 from chromosome 2, complete sequence Length = 209702 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 tgcatagactgcttctgataa 141 ||||||||||||||||||||| Sbjct: 176976 tgcatagactgcttctgataa 176996
>dbj|AK082016.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130095B09 product:5-HYDROXYTRYPTAMINE 1D RECEPTOR (5-HT-1D) (SEROTONIN RECEPTOR), full insert sequence Length = 2908 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 cataaggaaagtggtatcagt 50 ||||||||||||||||||||| Sbjct: 2593 cataaggaaagtggtatcagt 2613
>gb|AC098800.3| Homo sapiens BAC clone RP11-666P13 from 2, complete sequence Length = 142003 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 tgcatagactgcttctgataa 141 ||||||||||||||||||||| Sbjct: 76216 tgcatagactgcttctgataa 76236
>gb|AC141644.6| Mus musculus BAC clone RP23-115F21 from chromosome 6, complete sequence Length = 187643 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 aaaacataaggaaagtggtat 46 ||||||||||||||||||||| Sbjct: 178064 aaaacataaggaaagtggtat 178084
>emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chromosome 4, complete sequence Length = 202412 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 cataaggaaagtggtatcagt 50 ||||||||||||||||||||| Sbjct: 107244 cataaggaaagtggtatcagt 107264 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,811,284 Number of Sequences: 3902068 Number of extensions: 5811284 Number of successful extensions: 115413 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115339 Number of HSP's gapped (non-prelim): 73 length of query: 738 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 715 effective length of database: 17,143,297,704 effective search space: 12257457858360 effective search space used: 12257457858360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)