Clone Name | rbasd26l16 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_480372.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1980 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 2 gaatttaagattgcatatgttttgcatttaca 33 |||||||||||||| ||||||||||||||| Sbjct: 1979 gaatttaagattgctactgttttgcatttaca 1948
>ref|XM_896987.2| PREDICTED: Mus musculus microtubule associated serine/threonine kinase family member 4, transcript variant 2 (Mast4), mRNA Length = 3990 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tctacagctagggagggagg 160 |||||||||||||||||||| Sbjct: 2578 tctacagctagggagggagg 2559
>ref|XM_923668.2| PREDICTED: Mus musculus microtubule associated serine/threonine kinase family member 4, transcript variant 8 (Mast4), mRNA Length = 3993 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tctacagctagggagggagg 160 |||||||||||||||||||| Sbjct: 2581 tctacagctagggagggagg 2562
>ref|XM_949167.1| Theileria annulata strain Ankara hypothetical protein (TA20505) partial mRNA Length = 1716 Score = 40.1 bits (20), Expect = 2.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 ttttgcatttacaagtacatcatc 44 ||||||||||||| |||||||||| Sbjct: 594 ttttgcatttacacgtacatcatc 571
>gb|AC165290.2| Mus musculus BAC clone RP23-343A4 from chromosome 13, complete sequence Length = 206249 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tctacagctagggagggagg 160 |||||||||||||||||||| Sbjct: 41932 tctacagctagggagggagg 41951
>emb|CR788323.5| Zebrafish DNA sequence from clone DKEYP-71G11 in linkage group 2, complete sequence Length = 107248 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 attgcatatgttttgcattt 30 |||||||||||||||||||| Sbjct: 102201 attgcatatgttttgcattt 102182
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 gggaggaggcgccctatcca 96 |||||||||||||||||||| Sbjct: 1092031 gggaggaggcgccctatcca 1092012
>dbj|AK046702.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430318O09 product:unclassifiable, full insert sequence Length = 3321 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tctacagctagggagggagg 160 |||||||||||||||||||| Sbjct: 1938 tctacagctagggagggagg 1919
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 attgcatatgttttgcattt 30 |||||||||||||||||||| Sbjct: 376334 attgcatatgttttgcattt 376315
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 2 gaatttaagattgcatatgttttgcatttaca 33 |||||||||||||| ||||||||||||||| Sbjct: 4690287 gaatttaagattgctactgttttgcatttaca 4690256
>dbj|AP004692.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0455A11 Length = 158629 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 2 gaatttaagattgcatatgttttgcatttaca 33 |||||||||||||| ||||||||||||||| Sbjct: 48303 gaatttaagattgctactgttttgcatttaca 48272
>dbj|AK121489.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150L05, full insert sequence Length = 1980 Score = 40.1 bits (20), Expect = 2.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 2 gaatttaagattgcatatgttttgcatttaca 33 |||||||||||||| ||||||||||||||| Sbjct: 1979 gaatttaagattgctactgttttgcatttaca 1948
>emb|AL662992.3|OSJN00193 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004G23, complete sequence Length = 115972 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 attgcatatgttttgcattt 30 |||||||||||||||||||| Sbjct: 60993 attgcatatgttttgcattt 60974
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 attgcatatgttttgcattt 30 |||||||||||||||||||| Sbjct: 15086 attgcatatgttttgcattt 15067
>gb|AC167975.3| Mus musculus BAC clone RP23-171A14 from chromosome 13, complete sequence Length = 220418 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tctacagctagggagggagg 160 |||||||||||||||||||| Sbjct: 128063 tctacagctagggagggagg 128082
>ref|XM_528105.1| PREDICTED: Pan troglodytes similar to neuregulin 1 isoform GGF2; heregulin, alpha (45kD, ERBB2 p185-activator); glial growth factor; neu differentiation factor; sensory and motor neuron derived factor (LOC472733), mRNA Length = 1059 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 ggggaggaggcgccctatc 94 ||||||||||||||||||| Sbjct: 463 ggggaggaggcgccctatc 481
>ref|NM_013962.1| Homo sapiens neuregulin 1 (NRG1), transcript variant GGF2, mRNA Length = 1986 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 ggggaggaggcgccctatc 94 ||||||||||||||||||| Sbjct: 724 ggggaggaggcgccctatc 742
>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete sequence Length = 170866 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 ttgcatatgttttgcattt 30 ||||||||||||||||||| Sbjct: 59898 ttgcatatgttttgcattt 59880
>emb|BX640540.3| Chicken DNA sequence from clone WAG-124D2, complete sequence Length = 161956 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 147 gctagggagggagggaaga 165 ||||||||||||||||||| Sbjct: 132017 gctagggagggagggaaga 132035
>ref|XM_649491.1| Entamoeba histolytica HM-1:IMSS amino acid transporter, putative (49.t00031) partial mRNA Length = 1431 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 atatgttttgcatttacaa 34 ||||||||||||||||||| Sbjct: 1024 atatgttttgcatttacaa 1042
>gb|AE017245.1| Mycoplasma synoviae 53, complete genome Length = 799476 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 gcaaacaattctatgcaaa 75 ||||||||||||||||||| Sbjct: 372017 gcaaacaattctatgcaaa 372035
>emb|AL732290.4| Human DNA sequence from clone CTD-2338C19 on chromosome X, complete sequence Length = 66122 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 ttgcatatgttttgcattt 30 ||||||||||||||||||| Sbjct: 46681 ttgcatatgttttgcattt 46663
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 ggggaggaggcgccctatc 94 ||||||||||||||||||| Sbjct: 245308 ggggaggaggcgccctatc 245326
>emb|AL354919.16| Human DNA sequence from clone RP11-84A19 on chromosome 1 Contains the 5' end of the BAI2 gene for brain-specific angiogenesis inhibitor 2, the gene for a novel protein (FLJ33697, FLJ25348, FLJ39908, FLJ25348, FLJ38510, FLJ38873), a novel gene (FLJ46627) and three CpG islands, complete sequence Length = 124413 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 ttgcatatgttttgcattt 30 ||||||||||||||||||| Sbjct: 61333 ttgcatatgttttgcattt 61315
>gb|AC133618.3| Rattus norvegicus 18 BAC CH230-71N8 (Children's Hospital Oakland Research Institute) complete sequence Length = 234684 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 146 agctagggagggagggaag 164 ||||||||||||||||||| Sbjct: 103203 agctagggagggagggaag 103221
>emb|CR381585.11| Zebrafish DNA sequence from clone DKEY-27P7 in linkage group 20 Contains the gene for a novel protein similar to mouse and human integrin beta 1 binding protein 1 (ITGB1BP1), the gene for a novel protein similar to vertebrate development and differentiation enhancing factor 2 (DDEF2) and three CpG islands, complete sequence Length = 209698 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 112 tgatctgttagttattagt 130 ||||||||||||||||||| Sbjct: 183812 tgatctgttagttattagt 183794
>gb|AC087341.4| Homo sapiens chromosome 8, clone RP11-381I15, complete sequence Length = 177835 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 aatttaagattgcatatgt 21 ||||||||||||||||||| Sbjct: 90451 aatttaagattgcatatgt 90433
>gb|AC104029.5| Homo sapiens chromosome 8, clone RP11-478B14, complete sequence Length = 177443 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 ggggaggaggcgccctatc 94 ||||||||||||||||||| Sbjct: 156424 ggggaggaggcgccctatc 156406
>gb|AF188026.4| Homo sapiens chromosome 8 clone CTD-2373L20 map 8q24.3, complete sequence Length = 101456 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 ttttgcatttacaagtacatcat 43 |||||||||||| |||||||||| Sbjct: 78369 ttttgcatttaccagtacatcat 78391
>gb|AC104000.5| Homo sapiens chromosome 8, clone RP11-97N12, complete sequence Length = 156855 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 ggggaggaggcgccctatc 94 ||||||||||||||||||| Sbjct: 93039 ggggaggaggcgccctatc 93057
>gb|AC090776.3| Homo sapiens chromosome 8, clone CTD-2373L20, complete sequence Length = 101459 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 ttttgcatttacaagtacatcat 43 |||||||||||| |||||||||| Sbjct: 23089 ttttgcatttaccagtacatcat 23067
>gb|AC007860.6| Homo sapiens 8 BAC RP11-709E21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186298 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 ttttgcatttacaagtacatcat 43 |||||||||||| |||||||||| Sbjct: 120683 ttttgcatttaccagtacatcat 120661
>ref|XM_926044.1| PREDICTED: Homo sapiens similar to neuregulin 1 isoform GGF2 (LOC653104), mRNA Length = 1059 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 ggggaggaggcgccctatc 94 ||||||||||||||||||| Sbjct: 463 ggggaggaggcgccctatc 481
>emb|BX322574.10| Zebrafish DNA sequence from clone DKEY-35I15 in linkage group 3, complete sequence Length = 150999 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gattgcatatgttttgcat 28 ||||||||||||||||||| Sbjct: 15853 gattgcatatgttttgcat 15871
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 ggggaggaggcgccctatc 94 ||||||||||||||||||| Sbjct: 245308 ggggaggaggcgccctatc 245326
>gb|AC009956.12| Homo sapiens BAC clone RP11-195F23 from 2, complete sequence Length = 61552 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 108 tctgtgatctgttagttattagt 130 |||||||||| |||||||||||| Sbjct: 2224 tctgtgatctattagttattagt 2202
>dbj|AB006902.2| Acinetobacter sp. NCIMB9871 cyclohexanol metabolic gene cluster (chnB, chnE, chnR, orf3, chnA, orf5, chnD, chnC), complete cds Length = 16160 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 17 tatgttttgcatttacaagtaca 39 ||||||||| ||||||||||||| Sbjct: 15770 tatgttttgaatttacaagtaca 15748
>emb|CT824641.5| Human DNA sequence from clone XX-HCC1954_31F14, complete sequence Length = 110526 Score = 38.2 bits (19), Expect = 8.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 ttttgcatttacaagtacatcat 43 |||||||||||| |||||||||| Sbjct: 30758 ttttgcatttaccagtacatcat 30780
>emb|AL808147.21| Mouse DNA sequence from clone RP23-80N9 on chromosome 4, complete sequence Length = 233270 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 atgttttgcatttacaagt 36 ||||||||||||||||||| Sbjct: 84645 atgttttgcatttacaagt 84627
>gb|L12260.1|HUMGGF2A Human recombinant glial growth factor 2 mRNA, complete cds and flanking regions Length = 1986 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 ggggaggaggcgccctatc 94 ||||||||||||||||||| Sbjct: 724 ggggaggaggcgccctatc 742
>emb|AL606903.8| Mouse DNA sequence from clone RP23-278I3 on chromosome 4, complete sequence Length = 175238 Score = 38.2 bits (19), Expect = 8.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 146 agctagggagggagggaag 164 ||||||||||||||||||| Sbjct: 159195 agctagggagggagggaag 159177 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,914,449 Number of Sequences: 3902068 Number of extensions: 1914449 Number of successful extensions: 383935 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 383635 Number of HSP's gapped (non-prelim): 300 length of query: 179 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 157 effective length of database: 17,147,199,772 effective search space: 2692110364204 effective search space used: 2692110364204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)