ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27a15 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK068648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159B10, full insert sequence Length = 1452 Score = 113 bits (57), Expect = 8e-22 Identities = 246/309 (79%) Strand = Plus / Minus Query: 383 cactttacatagttgtagtcagggtacgtcttctttagcaactccaacatagcgtttgtg 442 ||||||||||| ||||||| ||||| | ||||| || ||||||| |||| |||| | Sbjct: 1074 cactttacataattgtagttggggtaaatgttcttgagaaactccacagtagcctttggg 1015 Query: 443 ctaatataatttggtgcgcagatatatcttccggatgattctggtttctcgtatactaga 502 || || | || |||||||| | |||||| || ||||||||||||||||||||||| ||| Sbjct: 1014 ctgatgtgatacggtgcgcaaagatatctgccagatgattctggtttctcgtataccaga 955 Query: 503 agcagggcatcggccacatcacggacatcgactatgtgccacagcatgtcattcaacaca 562 | || || || ||||||||||||||||| ||||||||| ||| ||||| ||| || Sbjct: 954 atcaaagcttcagccacatcacggacatctactatgtgcaacaacatgttcctcattacg 895 Query: 563 ttaggacctccttttatgacatagaggaggagttcgcttgtagtattgacaacacgttgc 622 || |||||||||||| | | ||||| ||||||||| | | ||||||||| ||||| Sbjct: 894 tttggacctccttttgttatatagatgaggagttcattgctggtattgacagttggttgc 835 Query: 623 aattgtggccccaaaacaatacaagggcatactgtaacagcatttagctcgttcttctct 682 || ||||| || ||||| | ||||||||| ||||||||| | ||||| | || |||||| Sbjct: 834 aactgtggaccaaaaactaaacaagggcagactgtaacaacgtttagaccttttttctct 775 Query: 683 gcatattcc 691 ||||||||| Sbjct: 774 gcatattcc 766
>dbj|AK062138.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F11, full insert sequence Length = 1270 Score = 113 bits (57), Expect = 8e-22 Identities = 246/309 (79%) Strand = Plus / Minus Query: 383 cactttacatagttgtagtcagggtacgtcttctttagcaactccaacatagcgtttgtg 442 ||||||||||| ||||||| ||||| | ||||| || ||||||| |||| |||| | Sbjct: 938 cactttacataattgtagttggggtaaatgttcttgagaaactccacagtagcctttggg 879 Query: 443 ctaatataatttggtgcgcagatatatcttccggatgattctggtttctcgtatactaga 502 || || | || |||||||| | |||||| || ||||||||||||||||||||||| ||| Sbjct: 878 ctgatgtgatacggtgcgcaaagatatctgccagatgattctggtttctcgtataccaga 819 Query: 503 agcagggcatcggccacatcacggacatcgactatgtgccacagcatgtcattcaacaca 562 | || || || ||||||||||||||||| ||||||||| ||| ||||| ||| || Sbjct: 818 atcaaagcttcagccacatcacggacatctactatgtgcaacaacatgttcctcattacg 759 Query: 563 ttaggacctccttttatgacatagaggaggagttcgcttgtagtattgacaacacgttgc 622 || |||||||||||| | | ||||| ||||||||| | | ||||||||| ||||| Sbjct: 758 tttggacctccttttgttatatagatgaggagttcattgctggtattgacagttggttgc 699 Query: 623 aattgtggccccaaaacaatacaagggcatactgtaacagcatttagctcgttcttctct 682 || ||||| || ||||| | ||||||||| ||||||||| | ||||| | || |||||| Sbjct: 698 aactgtggaccaaaaactaaacaagggcagactgtaacaacgtttagaccttttttctct 639 Query: 683 gcatattcc 691 ||||||||| Sbjct: 638 gcatattcc 630
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 89.7 bits (45), Expect = 1e-14 Identities = 138/169 (81%) Strand = Plus / Minus Query: 383 cactttacatagttgtagtcagggtacgtcttctttagcaactccaacatagcgtttgtg 442 ||||||||||| ||||||| ||||| | ||||| || ||||||| |||| |||| | Sbjct: 28054 cactttacataattgtagttggggtaaatgttcttgagaaactccacagtagcctttggg 27995 Query: 443 ctaatataatttggtgcgcagatatatcttccggatgattctggtttctcgtatactaga 502 || || | || |||||||| | |||||| || ||||||||||||||||||||||| ||| Sbjct: 27994 ctgatgtgatacggtgcgcaaagatatctgccagatgattctggtttctcgtataccaga 27935 Query: 503 agcagggcatcggccacatcacggacatcgactatgtgccacagcatgt 551 | || || || ||||||||||||||||| ||||||||| ||| ||||| Sbjct: 27934 atcaaagcttcagccacatcacggacatctactatgtgcaacaacatgt 27886 Score = 87.7 bits (44), Expect = 5e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 467 tatcttccggatgattctggtttctcgtatactagaagcagggcatcggccacatcacgg 526 ||||| || |||||||||||||| ||||| | | ||| | ||||||||||||||||||| Sbjct: 11256 tatctcccagatgattctggtttttcgtacagcaaaagtaaggcatcggccacatcacgg 11197 Query: 527 acatcgactatgtgccacag 546 |||||||||||||||||||| Sbjct: 11196 acatcgactatgtgccacag 11177 Score = 52.0 bits (26), Expect = 0.003 Identities = 62/74 (83%) Strand = Plus / Minus Query: 618 gttgcaattgtggccccaaaacaatacaagggcatactgtaacagcatttagctcgttct 677 ||||||| ||||| || ||||| | ||||||||| ||||||||| | ||||| | || | Sbjct: 27612 gttgcaactgtggaccaaaaactaaacaagggcagactgtaacaacgtttagaccttttt 27553 Query: 678 tctctgcatattcc 691 |||||||||||||| Sbjct: 27552 tctctgcatattcc 27539 Score = 48.1 bits (24), Expect = 0.041 Identities = 42/48 (87%) Strand = Plus / Minus Query: 491 tcgtatactagaagcagggcatcggccacatcacggacatcgactatg 538 ||||| |||||||| | |||||||| ||||| ||||||||||||||| Sbjct: 45271 tcgtacactagaagtaaagcatcggcgacatcgcggacatcgactatg 45224 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Minus Query: 509 gcatcggccacatcacggacatcgactatg 538 |||||||| ||||| ||||||||||||||| Sbjct: 36848 gcatcggcgacatcgcggacatcgactatg 36819
>dbj|AK073442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044G18, full insert sequence Length = 1342 Score = 48.1 bits (24), Expect = 0.041 Identities = 42/48 (87%) Strand = Plus / Minus Query: 491 tcgtatactagaagcagggcatcggccacatcacggacatcgactatg 538 ||||| |||||||| | |||||||| ||||| ||||||||||||||| Sbjct: 791 tcgtacactagaagtaaagcatcggcgacatcgcggacatcgactatg 744
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 414 tctttagcaactccaacatagcgtt 438 ||||||||| ||||||||||||||| Sbjct: 1748755 tctttagcagctccaacatagcgtt 1748779
>gb|AC154494.2| Mus musculus BAC clone RP24-111G24 from chromosome 9, complete sequence Length = 182959 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 actagaaagcactggccactg 166 ||||||||||||||||||||| Sbjct: 135742 actagaaagcactggccactg 135722
>gb|AC166352.1| Mus musculus BAC clone RP24-234M1 from chromosome 9, complete sequence Length = 166299 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 actagaaagcactggccactg 166 ||||||||||||||||||||| Sbjct: 2104 actagaaagcactggccactg 2084 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,453,776 Number of Sequences: 3902068 Number of extensions: 5453776 Number of successful extensions: 94153 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94068 Number of HSP's gapped (non-prelim): 82 length of query: 735 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 712 effective length of database: 17,143,297,704 effective search space: 12206027965248 effective search space used: 12206027965248 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
