ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_183504.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.19
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.74
3dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.74

>ref|NM_183504.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 696

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 53  tctatgccaattctngagctanaggccc 80
           |||||||||||||| |||||| ||||||
Sbjct: 656 tctatgccaattcttgagctaaaggccc 629



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 53     tctatgccaattctngagctanaggcc 79
              |||||||||||||| |||||| |||||
Sbjct: 456303 tctatgccaattcttgagctaaaggcc 456277



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>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 53    tctatgccaattctngagctanaggcc 79
             |||||||||||||| |||||| |||||
Sbjct: 96504 tctatgccaattcttgagctaaaggcc 96478


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 276,074
Number of Sequences: 3902068
Number of extensions: 276074
Number of successful extensions: 4007
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4002
Number of HSP's gapped (non-prelim): 5
length of query: 229
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 207
effective length of database: 17,147,199,772
effective search space: 3549470352804
effective search space used: 3549470352804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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