ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd27a14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 101 bits (51), Expect = 3e-18 Identities = 54/55 (98%) Strand = Plus / Plus Query: 599 gtgcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctc 653 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 32942706 gtgcttactcccagggcacgtcgccggcgagcatgaggtcgccgtccttgtcctc 32942760 Score = 71.9 bits (36), Expect = 3e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcct 652 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 24100814 gggacgtcgccgacgagcatgaggtcgccgtccttgtcct 24100775 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 601 gcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 24085710 gcttactcccacgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 24085765 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 471 cattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 515 |||||||| |||| ||||||| || |||||||||||||||||||| Sbjct: 32942584 cattatccgcagcttcttgcaagaagagatgaacatgctgcaaaa 32942628
>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence Length = 151479 Score = 101 bits (51), Expect = 3e-18 Identities = 54/55 (98%) Strand = Plus / Minus Query: 599 gtgcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctc 653 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 47469 gtgcttactcccagggcacgtcgccggcgagcatgaggtcgccgtccttgtcctc 47415 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 471 cattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 515 |||||||| |||| ||||||| || |||||||||||||||||||| Sbjct: 47591 cattatccgcagcttcttgcaagaagagatgaacatgctgcaaaa 47547
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 101 bits (51), Expect = 3e-18 Identities = 54/55 (98%) Strand = Plus / Plus Query: 599 gtgcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctc 653 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 33033216 gtgcttactcccagggcacgtcgccggcgagcatgaggtcgccgtccttgtcctc 33033270 Score = 71.9 bits (36), Expect = 3e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcct 652 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 24017101 gggacgtcgccgacgagcatgaggtcgccgtccttgtcct 24017062 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 601 gcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 24003179 gcttactcccacgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 24003234 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 471 cattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 515 |||||||| |||| ||||||| || |||||||||||||||||||| Sbjct: 33033094 cattatccgcagcttcttgcaagaagagatgaacatgctgcaaaa 33033138
>ref|NM_185060.1| Oryza sativa (japonica cultivar-group), mRNA Length = 588 Score = 85.7 bits (43), Expect = 2e-13 Identities = 46/47 (97%) Strand = Plus / Minus Query: 607 tcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctc 653 |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 530 tcccagggcacgtcgccggcgagcatgaggtcgccgtccttgtcctc 484 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 471 cattatcctcagcctcttgcaggacgagatgaacatg 507 |||||||| |||| ||||||| || |||||||||||| Sbjct: 567 cattatccgcagcttcttgcaagaagagatgaacatg 531
>dbj|AK059619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G11, full insert sequence Length = 1128 Score = 85.7 bits (43), Expect = 2e-13 Identities = 46/47 (97%) Strand = Plus / Minus Query: 607 tcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctc 653 |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 595 tcccagggcacgtcgccggcgagcatgaggtcgccgtccttgtcctc 549 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 471 cattatcctcagcctcttgcaggacgagatgaacatg 507 |||||||| |||| ||||||| || |||||||||||| Sbjct: 632 cattatccgcagcttcttgcaagaagagatgaacatg 596
>gb|AY108311.1| Zea mays PCO113729 mRNA sequence Length = 1202 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 606 ctcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 636 ctcccatggcacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 586
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 25359886 gggacgtcgccgacgagcatgaggtcgccgtccttgtcctcgta 25359843 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 605 actcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 25345349 actcccatgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 25345400
>dbj|AK073361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E22, full insert sequence Length = 1165 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 634 gggacgtcgccgacgagcatgaggtcgccgtccttgtcctcgta 591
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 25288062 gggacgtcgccgacgagcatgaggtcgccgtccttgtcctcgta 25288019 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 605 actcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 25273525 actcccatgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 25273576
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152914 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 26696 gggacgtcgccgacgagcatgaggtcgccgtccttgtcctcgta 26653 Score = 63.9 bits (32), Expect = 6e-07 Identities = 47/52 (90%) Strand = Plus / Plus Query: 605 actcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 12159 actcccatgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 12210
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 600 tgcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 23119028 tgcttacttccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 23118972 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 604 tactcccaggggacgtcgccggcgagcatgaggtc 638 |||||||| |||||||||||| |||||||| |||| Sbjct: 14422840 tactcccatgggacgtcgccgacgagcatgcggtc 14422806
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 600 tgcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 69676 tgcttacttccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 69620
>dbj|AK061037.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B07, full insert sequence Length = 1241 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Minus Query: 600 tgcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 623 tgcttacttccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 567
>ref|XM_468971.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1095 Score = 71.9 bits (36), Expect = 3e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcct 652 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 716 gggacgtcgccgacgagcatgaggtcgccgtccttgtcct 677
>gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0069P02 map near S13580, complete sequence Length = 88044 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 601 gcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 5746 gcttactcccacgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 5691
>gb|AC145379.2| Oryza sativa chromosome 3 BAC OSJNBa0010N03 genomic sequence, complete sequence Length = 140980 Score = 71.9 bits (36), Expect = 3e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 601 gcttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 136846 gcttactcccacgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 136791 Score = 71.9 bits (36), Expect = 3e-09 Identities = 39/40 (97%) Strand = Plus / Plus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcct 652 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 123018 gggacgtcgccgacgagcatgaggtcgccgtccttgtcct 123057
>dbj|AK073044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001E11, full insert sequence Length = 1097 Score = 71.9 bits (36), Expect = 3e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 613 gggacgtcgccggcgagcatgaggtcgccgtccttgtcct 652 |||||||||||| ||||||||||||||||||||||||||| Sbjct: 718 gggacgtcgccgacgagcatgaggtcgccgtccttgtcct 679
>gb|AY107725.1| Zea mays PCO106440 mRNA sequence Length = 1176 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 616 acgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 717 acgtctccgacgagcatgaggtcgccgtccttgtcctcgta 677
>ref|XM_550382.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1054 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 637 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 590
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 4074626 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 4074673
>dbj|AP002903.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0509B06 Length = 104515 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 41369 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 41416
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 21597 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 21644
>dbj|AK109373.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G03, full insert sequence Length = 1118 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 637 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 590
>dbj|AK100800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121G17, full insert sequence Length = 1078 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 639 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 592
>dbj|AK069376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012K19, full insert sequence Length = 1230 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 615 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 568
>dbj|AK069242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010B20, full insert sequence Length = 1089 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 629 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 582
>dbj|AK060091.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-D01, full insert sequence Length = 1054 Score = 63.9 bits (32), Expect = 6e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 637 ccaggggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 590
>ref|XM_468970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 707 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 606 ctcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 614 ctcccacgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 564
>dbj|AK068213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K13, full insert sequence Length = 1545 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 606 ctcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||| |||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 987 ctcccatgggacgtcgccgacgagcatccagtcgccgtccttgtcctcgta 937
>gb|AC144738.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0029B02, complete sequence Length = 156649 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 135040 ccaggggacgtctccgacgagcatccagtcgccgtccttgtcctcgta 135087
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 4624573 ccaggggacgtctccgacgagcatccagtcgccgtccttgtcctcgta 4624620
>dbj|AK100080.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001M24, full insert sequence Length = 1204 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 684 ccaggggacgtctccgacgagcatccagtcgccgtccttgtcctcgta 637
>dbj|AK061796.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G05, full insert sequence Length = 1201 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 681 ccaggggacgtctccgacgagcatccagtcgccgtccttgtcctcgta 634
>gb|AY104734.1| Zea mays PCO138559 mRNA sequence Length = 1116 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 609 ccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||||||||||||| ||||||| |||||| |||||||||||||| Sbjct: 641 ccaggggacgtcgccgacgagcatccagtcgccatccttgtcctcgta 594
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 602 cttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||||||||| || || || | ||||||||||| ||||||||||||||||| Sbjct: 4387945 cttactcccagggcacatctccaacaagcatgaggtcaccgtccttgtcctcgta 4387999 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 469 ttcattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 515 ||||| ||||||| | |||||||||| ||||||||||| |||||||| Sbjct: 4387799 ttcatgatcctcaacttcttgcaggaagagatgaacattctgcaaaa 4387845
>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1506_G02 Length = 106742 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 602 cttactcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 ||||||||||||| || || || | ||||||||||| ||||||||||||||||| Sbjct: 27794 cttactcccagggcacatctccaacaagcatgaggtcaccgtccttgtcctcgta 27848 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 469 ttcattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 515 ||||| ||||||| | |||||||||| ||||||||||| |||||||| Sbjct: 27648 ttcatgatcctcaacttcttgcaggaagagatgaacattctgcaaaa 27694
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 599 gtgcttactcccaggggacgtcgccggcgagcat 632 |||||||||||||||| ||||||||| ||||||| Sbjct: 20341137 gtgcttactcccagggcacgtcgccgacgagcat 20341170 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 aaaacagtactgctagtctgctac 137 |||| ||||||||||||||||||| Sbjct: 18317999 aaaagagtactgctagtctgctac 18318022
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 599 gtgcttactcccaggggacgtcgccggcgagcat 632 |||||||||||||||| ||||||||| ||||||| Sbjct: 120264 gtgcttactcccagggcacgtcgccgacgagcat 120297
>dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375a, complete sequence Length = 58157 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 468 tttcattatcctcagcctcttgcaggacgagatgaacatgctgcaa 513 ||||| ||| ||||||||||| ||||| || ||||||||||||||| Sbjct: 22155 tttcactattctcagcctcttacaggaagacatgaacatgctgcaa 22110
>ref|XM_476878.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1164 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 628 agcatgaggtcgccgtccttgtcctcgta 656 ||||||||||| ||||||||||||||||| Sbjct: 668 agcatgaggtcaccgtccttgtcctcgta 640 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 469 ttcattatcctcagcctcttgcaggacgagatgaacat 506 ||||| ||||||| | |||||||||| ||||||||||| Sbjct: 728 ttcatgatcctcaacttcttgcaggaagagatgaacat 691
>dbj|AK103483.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130J12, full insert sequence Length = 1164 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 628 agcatgaggtcgccgtccttgtcctcgta 656 ||||||||||| ||||||||||||||||| Sbjct: 668 agcatgaggtcaccgtccttgtcctcgta 640 Score = 44.1 bits (22), Expect = 0.57 Identities = 34/38 (89%) Strand = Plus / Minus Query: 469 ttcattatcctcagcctcttgcaggacgagatgaacat 506 ||||| ||||||| | |||||||||| ||||||||||| Sbjct: 728 ttcatgatcctcaacttcttgcaggaagagatgaacat 691
>gb|AY781902.1| Saccharum hybrid cultivar isolate c57 auxin-induced protein mRNA, partial cds Length = 1046 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 606 ctcccaggggacgtcgccggcgagcatgaggtcgccgtccttgtcctcgta 656 |||||| || ||||||||| ||||||| |||||| |||||||||||||| Sbjct: 470 ctcccacggcacgtcgccgacgagcatccagtcgccctccttgtcctcgta 420
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 604 tactcccaggggacgtcgccggcgagcatgaggtc 638 |||||||| |||||||||||| |||||||| |||| Sbjct: 466405 tactcccatgggacgtcgccgacgagcatgcggtc 466371
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 604 tactcccaggggacgtcgccggcgagcatgaggtc 638 |||||||| |||||||||||| |||||||| |||| Sbjct: 16014 tactcccatgggacgtcgccgacgagcatgcggtc 15980
>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0526E12 Length = 150872 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 604 tactcccaggggacgtcgccggcgagcatgaggtc 638 |||||||| |||||||||||| |||||||| |||| Sbjct: 150715 tactcccatgggacgtcgccgacgagcatgcggtc 150681
>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0007D08 Length = 183142 Score = 46.1 bits (23), Expect = 0.15 Identities = 32/35 (91%) Strand = Plus / Minus Query: 604 tactcccaggggacgtcgccggcgagcatgaggtc 638 |||||||| |||||||||||| |||||||| |||| Sbjct: 56365 tactcccatgggacgtcgccgacgagcatgcggtc 56331
>emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on chromosome X, complete sequence Length = 182607 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 20 acacccaagtcccggtcctttct 42 ||||||||||||||||||||||| Sbjct: 107970 acacccaagtcccggtcctttct 107992
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 172 ggactggccgccggagctcgcgcgcc 197 ||||||||||||| |||||||||||| Sbjct: 1746148 ggactggccgccgcagctcgcgcgcc 1746123
>emb|CR391990.8| Zebrafish DNA sequence from clone DKEY-261M5 in linkage group 14, complete sequence Length = 165493 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 494 acgagatgaacatgctgcaaaaccaa 519 |||||||||||||||||||| ||||| Sbjct: 82912 acgagatgaacatgctgcaacaccaa 82937
>emb|AM040278.1| Capsicum chinense mRNA for auxin induced protein (aux/iaa gene) Length = 1778 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 468 tttcattatcctcagcctcttgcagg 493 |||||| ||||||||||||||||||| Sbjct: 1256 tttcatgatcctcagcctcttgcagg 1231
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 486 cttgcaggacgagatgaacatg 507 |||||||||||||||||||||| Sbjct: 3957328 cttgcaggacgagatgaacatg 3957307
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 172 ggactggccgccggagctcgcgcgcc 197 ||||||||||||| |||||||||||| Sbjct: 2630104 ggactggccgccgcagctcgcgcgcc 2630079
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 ccggccggactggccgccggag 187 |||||||||||||||||||||| Sbjct: 30007 ccggccggactggccgccggag 30028
>emb|AJ295941.1|FPR295941 Festuca pratensis mRNA for beta expansin B2 (expB2 gene) Length = 1194 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 632 tgaggtcgccgtccttgtcctcgta 656 |||||||||||||| |||||||||| Sbjct: 677 tgaggtcgccgtccatgtcctcgta 653
>gb|AC006559.6| Homo sapiens 12p12 BAC RPCI11-501E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179444 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 464 agcttttcattatcctcagcc 484 ||||||||||||||||||||| Sbjct: 113949 agcttttcattatcctcagcc 113929
>gb|AC153616.8| Mus musculus 6 BAC RP23-328I7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195332 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 402 atcgcttcatttatgtatgtgtgca 426 |||| |||||||||||||||||||| Sbjct: 121246 atcgattcatttatgtatgtgtgca 121222
>gb|AF542555.1| Marchantia polymorpha PAC pMM2D3 RS/SP6 region hypothetical alliin lyase-like protein (M2D3.1), hypothetical protein (M2D3.2), M2D3.3 protein (M2D3.3), and hypothetical protein (M2D3.4) genes, complete cds Length = 39397 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 628 agcatgaggtcgccgtccttgtcct 652 ||||||| ||||||||||||||||| Sbjct: 15337 agcatgatgtcgccgtccttgtcct 15361
>emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in linkage group 24, complete sequence Length = 208279 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 tgaacatgctgcaaaaccaaa 520 ||||||||||||||||||||| Sbjct: 23952 tgaacatgctgcaaaaccaaa 23932
>emb|AJ306825.1|PTR306825 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA2 gene) Length = 1763 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 463 gagcttttcattatcctcagcctcttgca 491 ||||| ||||| ||||||||||||||||| Sbjct: 1230 gagctcttcatgatcctcagcctcttgca 1202
>dbj|AK068232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149D08, full insert sequence Length = 3103 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 606 ctcccaggggacgtcgccggcgagcatgaggtc 638 |||||| |||||||||||| |||||||| |||| Sbjct: 2579 ctcccatgggacgtcgccgacgagcatgcggtc 2547
>ref|NM_112422.2| Arabidopsis thaliana IAA19; transcription factor AT3G15540 (IAA19) mRNA, complete cds Length = 968 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 460 tccgagcttttcattatcctcagcctcttgca 491 ||||| ||||||||||| |||| ||||||||| Sbjct: 627 tccgatcttttcattattctcaacctcttgca 596
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 cgatccggccggactggccg 181 |||||||||||||||||||| Sbjct: 2429065 cgatccggccggactggccg 2429084
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cctgcgcgccgatccggccg 172 |||||||||||||||||||| Sbjct: 1113566 cctgcgcgccgatccggccg 1113585
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cctgcgcgccgatccggccg 172 |||||||||||||||||||| Sbjct: 2085296 cctgcgcgccgatccggccg 2085277
>gb|AC024081.1| Arabidopsis thaliana chromosome III P1 MJK13 genomic sequence, complete sequence Length = 82893 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 460 tccgagcttttcattatcctcagcctcttgca 491 ||||| ||||||||||| |||| ||||||||| Sbjct: 79779 tccgatcttttcattattctcaacctcttgca 79748
>ref|XM_808825.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510607.80) partial mRNA Length = 10455 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 613 gggacgtcgccggcgagcatgagg 636 ||||||||| |||||||||||||| Sbjct: 7270 gggacgtcgtcggcgagcatgagg 7293
>gb|AC121941.3| Mus musculus BAC clone RP24-209I3 from chromosome 2, complete sequence Length = 165818 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 ttcatttatgtatgtgtgca 426 |||||||||||||||||||| Sbjct: 6062 ttcatttatgtatgtgtgca 6081
>ref|XM_808826.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053510607.29) partial mRNA Length = 9781 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 613 gggacgtcgccggcgagcatgagg 636 ||||||||| |||||||||||||| Sbjct: 7288 gggacgtcgtcggcgagcatgagg 7311
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 ttcgtcgccatcatcgtgct 459 |||||||||||||||||||| Sbjct: 4353215 ttcgtcgccatcatcgtgct 4353196
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cctgcgcgccgatccggccg 172 |||||||||||||||||||| Sbjct: 2289515 cctgcgcgccgatccggccg 2289534
>gb|AY962829.1| Prunus armeniaca auxin-induced protein mRNA, partial cds Length = 364 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 460 tccgagcttttcattatcctcagcctcttgca 491 ||||| || ||||| ||||||||||||||||| Sbjct: 188 tccgatctcttcatgatcctcagcctcttgca 157
>emb|AL928822.6| Mouse DNA sequence from clone RP23-419O21 on chromosome 2, complete sequence Length = 101335 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 ttcatttatgtatgtgtgca 426 |||||||||||||||||||| Sbjct: 57103 ttcatttatgtatgtgtgca 57122
>emb|CR790365.7| Zebrafish DNA sequence from clone DKEY-179K24 in linkage group 3, complete sequence Length = 161472 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 gagatgaacatgctgcaaaaccaa 519 |||||||||||||||||| ||||| Sbjct: 66240 gagatgaacatgctgcaacaccaa 66217
>emb|BX957332.10| Zebrafish DNA sequence from clone DKEY-170K13 in linkage group 19, complete sequence Length = 141125 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 496 gagatgaacatgctgcaaaaccaa 519 |||||||||||||||||| ||||| Sbjct: 15558 gagatgaacatgctgcaacaccaa 15581
>emb|AL606722.18| Zebrafish DNA sequence from clone BUSM1-27N24 Contains the zebrafish ednrb1 gene for endothelin receptor B and three CpG islands, complete sequence Length = 74910 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 gagatgaacatgctgcaaaaccaa 519 |||||||||||||||||| ||||| Sbjct: 15164 gagatgaacatgctgcaacaccaa 15141
>emb|BX511270.9| Zebrafish DNA sequence from clone DKEY-35N12 in linkage group 14, complete sequence Length = 246102 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 gagatgaacatgctgcaaaaccaa 519 |||||||||||||||||| ||||| Sbjct: 28665 gagatgaacatgctgcaacaccaa 28642
>gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete sequence Length = 117136 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 456 tgcttccgagcttttcattatcctcagcctcttgca 491 |||||| || || ||||||||||||| ||||||||| Sbjct: 95498 tgcttcagaactcttcattatcctcaacctcttgca 95533
>dbj|AP007165.1| Aspergillus oryzae RIB40 genomic DNA, SC124 Length = 249334 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ccacgtacggcaagtttcca 391 |||||||||||||||||||| Sbjct: 67135 ccacgtacggcaagtttcca 67154
>gb|BT024586.1| Arabidopsis thaliana At3g15540 mRNA, complete cds Length = 594 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 460 tccgagcttttcattatcctcagcctcttgca 491 ||||| ||||||||||| |||| ||||||||| Sbjct: 551 tccgatcttttcattattctcaacctcttgca 520
>gb|AC157655.2| Mus musculus BAC clone RP23-462E18 from chromosome 8, complete sequence Length = 170167 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 tatgcaaattaattaagatg 585 |||||||||||||||||||| Sbjct: 97752 tatgcaaattaattaagatg 97733
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ttcgtcgccatcatcgtgct 459 |||||||||||||||||||| Sbjct: 1490781 ttcgtcgccatcatcgtgct 1490800
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 gcaggacgagatgaacatgc 508 |||||||||||||||||||| Sbjct: 486703 gcaggacgagatgaacatgc 486722
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cctgcgcgccgatccggccg 172 |||||||||||||||||||| Sbjct: 811378 cctgcgcgccgatccggccg 811397
>gb|AY088753.1| Arabidopsis thaliana clone 94231 mRNA, complete sequence Length = 939 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 460 tccgagcttttcattatcctcagcctcttgca 491 ||||| ||||||||||| |||| ||||||||| Sbjct: 598 tccgatcttttcattattctcaacctcttgca 567
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 aaaacagtactgctagtctgctac 137 |||| ||||||||||||||||||| Sbjct: 32735 aaaagagtactgctagtctgctac 32758
>dbj|AB022218.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJK13 Length = 82893 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 460 tccgagcttttcattatcctcagcctcttgca 491 ||||| ||||||||||| |||| ||||||||| Sbjct: 79779 tccgatcttttcattattctcaacctcttgca 79748
>dbj|AK109310.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-F03, full insert sequence Length = 767 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cctgcgcgccgatccggccg 172 |||||||||||||||||||| Sbjct: 513 cctgcgcgccgatccggccg 494
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cctgcgcgccgatccggccg 172 |||||||||||||||||||| Sbjct: 2320525 cctgcgcgccgatccggccg 2320544 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ctacctgcgcgccgatccgg 169 |||||||||||||||||||| Sbjct: 292295 ctacctgcgcgccgatccgg 292276
>emb|CT027635.9| Zebrafish DNA sequence from clone CH73-366I20 in linkage group 2, complete sequence Length = 85958 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 496 gagatgaacatgctgcaaaaccaa 519 |||||||||||||||||| ||||| Sbjct: 19333 gagatgaacatgctgcaacaccaa 19310
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cctgcgcgccgatccggccg 172 |||||||||||||||||||| Sbjct: 2930868 cctgcgcgccgatccggccg 2930887
>gb|AC126801.5| Mus musculus BAC clone RP24-511J6 from 8, complete sequence Length = 157089 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 566 tatgcaaattaattaagatg 585 |||||||||||||||||||| Sbjct: 44263 tatgcaaattaattaagatg 44244
>gb|U49075.1|ATU49075 Arabidopsis thaliana early auxin-induced (IAA19) mRNA, partial cds Length = 620 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 460 tccgagcttttcattatcctcagcctcttgca 491 ||||| ||||||||||| |||| ||||||||| Sbjct: 396 tccgatcttttcattattctcaacctcttgca 365
>emb|AL929169.7| Zebrafish DNA sequence from clone BUSM1-30C14 in linkage group 1, complete sequence Length = 88917 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 496 gagatgaacatgctgcaaaaccaa 519 |||||||||||||||||| ||||| Sbjct: 43334 gagatgaacatgctgcaacaccaa 43357
>gb|AY669798.1| Arabidopsis thaliana clone C105336 IAA19 (At3g15540) mRNA, complete cds Length = 625 Score = 40.1 bits (20), Expect = 9.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 460 tccgagcttttcattatcctcagcctcttgca 491 ||||| ||||||||||| |||| ||||||||| Sbjct: 551 tccgatcttttcattattctcaacctcttgca 520
>dbj|AB004933.1| Vigna radiata mRNA for Aux22e, complete cds Length = 1006 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 472 attatcctcagcctcttgcaggacgagatgaacatg 507 ||||| ||||||||||||||||| || | ||||||| Sbjct: 649 attattctcagcctcttgcaggaggatacgaacatg 614 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,488,938 Number of Sequences: 3902068 Number of extensions: 4488938 Number of successful extensions: 87193 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85417 Number of HSP's gapped (non-prelim): 1776 length of query: 656 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 633 effective length of database: 17,143,297,704 effective search space: 10851707446632 effective search space used: 10851707446632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
