ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27a13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 4e-05
2gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genom... 58 4e-05
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
5dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
6dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone... 52 0.002
7emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on ch... 46 0.13
8ref|XM_476878.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.53
9gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.53
10emb|CR391990.8| Zebrafish DNA sequence from clone DKEY-261M5 in ... 44 0.53
11emb|AM040278.1| Capsicum chinense mRNA for auxin induced protein... 44 0.53
12gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.53
13gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 44 0.53
14dbj|AK103483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.53
15gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, comple... 44 0.53
16ref|NM_185060.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.1
17gb|AC006559.6| Homo sapiens 12p12 BAC RPCI11-501E24 (Roswell Par... 42 2.1
18gb|AC153616.8| Mus musculus 6 BAC RP23-328I7 (Roswell Park Cance... 42 2.1
19emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in... 42 2.1
20emb|AJ306825.1|PTR306825 Populus tremula x Populus tremuloides m... 42 2.1
21dbj|AK059619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
22ref|NM_112422.2| Arabidopsis thaliana IAA19; transcription facto... 40 8.3
23gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 8.3
24gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 8.3
25gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 8.3
26gb|AC024081.1| Arabidopsis thaliana chromosome III P1 MJK13 geno... 40 8.3
27gb|AC121941.3| Mus musculus BAC clone RP24-209I3 from chromosome... 40 8.3
28gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 8.3
29emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.3
30gb|AY962829.1| Prunus armeniaca auxin-induced protein mRNA, part... 40 8.3
31emb|AL928822.6| Mouse DNA sequence from clone RP23-419O21 on chr... 40 8.3
32emb|CR790365.7| Zebrafish DNA sequence from clone DKEY-179K24 in... 40 8.3
33emb|BX957332.10| Zebrafish DNA sequence from clone DKEY-170K13 i... 40 8.3
34emb|AL606722.18| Zebrafish DNA sequence from clone BUSM1-27N24 C... 40 8.3
35emb|BX511270.9| Zebrafish DNA sequence from clone DKEY-35N12 in ... 40 8.3
36gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete s... 40 8.3
37dbj|AP007165.1| Aspergillus oryzae RIB40 genomic DNA, SC124 40 8.3
38gb|BT024586.1| Arabidopsis thaliana At3g15540 mRNA, complete cds 40 8.3
39gb|AC157655.2| Mus musculus BAC clone RP23-462E18 from chromosom... 40 8.3
40gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 8.3
41gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.3
42dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
43dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.3
44gb|AY088753.1| Arabidopsis thaliana clone 94231 mRNA, complete s... 40 8.3
45dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
46dbj|AB022218.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.3
47dbj|AK109310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
48emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.3
49emb|CT027635.9| Zebrafish DNA sequence from clone CH73-366I20 in... 40 8.3
50gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 8.3
51gb|AC126801.5| Mus musculus BAC clone RP24-511J6 from 8, complet... 40 8.3
52gb|U49075.1|ATU49075 Arabidopsis thaliana early auxin-induced (I... 40 8.3
53emb|AL929169.7| Zebrafish DNA sequence from clone BUSM1-30C14 in... 40 8.3
54gb|AY669798.1| Arabidopsis thaliana clone C105336 IAA19 (At3g155... 40 8.3
55dbj|AB004933.1| Vigna radiata mRNA for Aux22e, complete cds 40 8.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 470      cattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 514
                |||||||| |||| ||||||| || ||||||||||||||||||||
Sbjct: 32942584 cattatccgcagcttcttgcaagaagagatgaacatgctgcaaaa 32942628
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>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete
             sequence
          Length = 151479

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 470   cattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 514
             |||||||| |||| ||||||| || ||||||||||||||||||||
Sbjct: 47591 cattatccgcagcttcttgcaagaagagatgaacatgctgcaaaa 47547
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 470      cattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 514
                |||||||| |||| ||||||| || ||||||||||||||||||||
Sbjct: 33033094 cattatccgcagcttcttgcaagaagagatgaacatgctgcaaaa 33033138
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                              
Query: 468     ttcattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 514
               ||||| ||||||| | |||||||||| ||||||||||| ||||||||
Sbjct: 4387799 ttcatgatcctcaacttcttgcaggaagagatgaacattctgcaaaa 4387845
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>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1506_G02
          Length = 106742

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 468   ttcattatcctcagcctcttgcaggacgagatgaacatgctgcaaaa 514
             ||||| ||||||| | |||||||||| ||||||||||| ||||||||
Sbjct: 27648 ttcatgatcctcaacttcttgcaggaagagatgaacattctgcaaaa 27694
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>dbj|AP006680.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45D03, TM0375a,
             complete sequence
          Length = 58157

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 467   tttcattatcctcagcctcttgcaggacgagatgaacatgctgcaa 512
             ||||| ||| ||||||||||| ||||| || |||||||||||||||
Sbjct: 22155 tttcactattctcagcctcttacaggaagacatgaacatgctgcaa 22110
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>emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on chromosome X, complete
              sequence
          Length = 182607

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 19     acacccaagtcccggtcctttct 41
              |||||||||||||||||||||||
Sbjct: 107970 acacccaagtcccggtcctttct 107992
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>ref|XM_476878.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1164

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 468 ttcattatcctcagcctcttgcaggacgagatgaacat 505
           ||||| ||||||| | |||||||||| |||||||||||
Sbjct: 728 ttcatgatcctcaacttcttgcaggaagagatgaacat 691
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 171     ggactggccgccggagctcgcgcgcc 196
               ||||||||||||| ||||||||||||
Sbjct: 1746148 ggactggccgccgcagctcgcgcgcc 1746123
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>emb|CR391990.8| Zebrafish DNA sequence from clone DKEY-261M5 in linkage group 14,
             complete sequence
          Length = 165493

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 493   acgagatgaacatgctgcaaaaccaa 518
             |||||||||||||||||||| |||||
Sbjct: 82912 acgagatgaacatgctgcaacaccaa 82937
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>emb|AM040278.1| Capsicum chinense mRNA for auxin induced protein (aux/iaa gene)
          Length = 1778

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 467  tttcattatcctcagcctcttgcagg 492
            |||||| |||||||||||||||||||
Sbjct: 1256 tttcatgatcctcagcctcttgcagg 1231
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 485     cttgcaggacgagatgaacatg 506
               ||||||||||||||||||||||
Sbjct: 3957328 cttgcaggacgagatgaacatg 3957307
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 171     ggactggccgccggagctcgcgcgcc 196
               ||||||||||||| ||||||||||||
Sbjct: 2630104 ggactggccgccgcagctcgcgcgcc 2630079
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>dbj|AK103483.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130J12, full
           insert sequence
          Length = 1164

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 468 ttcattatcctcagcctcttgcaggacgagatgaacat 505
           ||||| ||||||| | |||||||||| |||||||||||
Sbjct: 728 ttcatgatcctcaacttcttgcaggaagagatgaacat 691
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>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome
          Length = 156487

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 165   ccggccggactggccgccggag 186
             ||||||||||||||||||||||
Sbjct: 30007 ccggccggactggccgccggag 30028
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>ref|NM_185060.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 588

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 470 cattatcctcagcctcttgcaggacgagatgaacatg 506
           |||||||| |||| ||||||| || ||||||||||||
Sbjct: 567 cattatccgcagcttcttgcaagaagagatgaacatg 531
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>gb|AC006559.6| Homo sapiens 12p12 BAC RPCI11-501E24 (Roswell Park Cancer Institute Human
              BAC Library) complete sequence
          Length = 179444

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 463    agcttttcattatcctcagcc 483
              |||||||||||||||||||||
Sbjct: 113949 agcttttcattatcctcagcc 113929
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>gb|AC153616.8| Mus musculus 6 BAC RP23-328I7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195332

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 401    atcgcttcatttatgtatgtgtgca 425
              |||| ||||||||||||||||||||
Sbjct: 121246 atcgattcatttatgtatgtgtgca 121222
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>emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in linkage group 24,
             complete sequence
          Length = 208279

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 499   tgaacatgctgcaaaaccaaa 519
             |||||||||||||||||||||
Sbjct: 23952 tgaacatgctgcaaaaccaaa 23932
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>emb|AJ306825.1|PTR306825 Populus tremula x Populus tremuloides mRNA for aux/IAA protein (IAA2
            gene)
          Length = 1763

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 462  gagcttttcattatcctcagcctcttgca 490
            ||||| ||||| |||||||||||||||||
Sbjct: 1230 gagctcttcatgatcctcagcctcttgca 1202
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>dbj|AK059619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-G11, full
           insert sequence
          Length = 1128

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 470 cattatcctcagcctcttgcaggacgagatgaacatg 506
           |||||||| |||| ||||||| || ||||||||||||
Sbjct: 632 cattatccgcagcttcttgcaagaagagatgaacatg 596
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>ref|NM_112422.2| Arabidopsis thaliana IAA19; transcription factor AT3G15540 (IAA19)
           mRNA, complete cds
          Length = 968

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 459 tccgagcttttcattatcctcagcctcttgca 490
           ||||| ||||||||||| |||| |||||||||
Sbjct: 627 tccgatcttttcattattctcaacctcttgca 596
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     cgatccggccggactggccg 180
               ||||||||||||||||||||
Sbjct: 2429065 cgatccggccggactggccg 2429084
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     cctgcgcgccgatccggccg 171
               ||||||||||||||||||||
Sbjct: 1113566 cctgcgcgccgatccggccg 1113585
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 152     cctgcgcgccgatccggccg 171
               ||||||||||||||||||||
Sbjct: 2085296 cctgcgcgccgatccggccg 2085277
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>gb|AC024081.1| Arabidopsis thaliana chromosome III P1 MJK13 genomic sequence, complete
             sequence
          Length = 82893

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 459   tccgagcttttcattatcctcagcctcttgca 490
             ||||| ||||||||||| |||| |||||||||
Sbjct: 79779 tccgatcttttcattattctcaacctcttgca 79748
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>gb|AC121941.3| Mus musculus BAC clone RP24-209I3 from chromosome 2, complete
            sequence
          Length = 165818

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 406  ttcatttatgtatgtgtgca 425
            ||||||||||||||||||||
Sbjct: 6062 ttcatttatgtatgtgtgca 6081
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 439     ttcgtcgccatcatcgtgct 458
               ||||||||||||||||||||
Sbjct: 4353215 ttcgtcgccatcatcgtgct 4353196
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     cctgcgcgccgatccggccg 171
               ||||||||||||||||||||
Sbjct: 2289515 cctgcgcgccgatccggccg 2289534
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>gb|AY962829.1| Prunus armeniaca auxin-induced protein mRNA, partial cds
          Length = 364

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 459 tccgagcttttcattatcctcagcctcttgca 490
           ||||| || ||||| |||||||||||||||||
Sbjct: 188 tccgatctcttcatgatcctcagcctcttgca 157
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>emb|AL928822.6| Mouse DNA sequence from clone RP23-419O21 on chromosome 2, complete
             sequence
          Length = 101335

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   ttcatttatgtatgtgtgca 425
             ||||||||||||||||||||
Sbjct: 57103 ttcatttatgtatgtgtgca 57122
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>emb|CR790365.7| Zebrafish DNA sequence from clone DKEY-179K24 in linkage group 3,
             complete sequence
          Length = 161472

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 495   gagatgaacatgctgcaaaaccaa 518
             |||||||||||||||||| |||||
Sbjct: 66240 gagatgaacatgctgcaacaccaa 66217
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>emb|BX957332.10| Zebrafish DNA sequence from clone DKEY-170K13 in linkage group 19,
             complete sequence
          Length = 141125

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 495   gagatgaacatgctgcaaaaccaa 518
             |||||||||||||||||| |||||
Sbjct: 15558 gagatgaacatgctgcaacaccaa 15581
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>emb|AL606722.18| Zebrafish DNA sequence from clone BUSM1-27N24 Contains the zebrafish
             ednrb1 gene for endothelin receptor B and three CpG
             islands, complete sequence
          Length = 74910

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 495   gagatgaacatgctgcaaaaccaa 518
             |||||||||||||||||| |||||
Sbjct: 15164 gagatgaacatgctgcaacaccaa 15141
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>emb|BX511270.9| Zebrafish DNA sequence from clone DKEY-35N12 in linkage group 14,
             complete sequence
          Length = 246102

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 495   gagatgaacatgctgcaaaaccaa 518
             |||||||||||||||||| |||||
Sbjct: 28665 gagatgaacatgctgcaacaccaa 28642
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>gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete sequence
          Length = 117136

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 455   tgcttccgagcttttcattatcctcagcctcttgca 490
             |||||| || || ||||||||||||| |||||||||
Sbjct: 95498 tgcttcagaactcttcattatcctcaacctcttgca 95533
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>dbj|AP007165.1| Aspergillus oryzae RIB40 genomic DNA, SC124
          Length = 249334

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   ccacgtacggcaagtttcca 390
             ||||||||||||||||||||
Sbjct: 67135 ccacgtacggcaagtttcca 67154
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>gb|BT024586.1| Arabidopsis thaliana At3g15540 mRNA, complete cds
          Length = 594

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 459 tccgagcttttcattatcctcagcctcttgca 490
           ||||| ||||||||||| |||| |||||||||
Sbjct: 551 tccgatcttttcattattctcaacctcttgca 520
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>gb|AC157655.2| Mus musculus BAC clone RP23-462E18 from chromosome 8, complete sequence
          Length = 170167

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tatgcaaattaattaagatg 584
             ||||||||||||||||||||
Sbjct: 97752 tatgcaaattaattaagatg 97733
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 439     ttcgtcgccatcatcgtgct 458
               ||||||||||||||||||||
Sbjct: 1490781 ttcgtcgccatcatcgtgct 1490800
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    gcaggacgagatgaacatgc 507
              ||||||||||||||||||||
Sbjct: 486703 gcaggacgagatgaacatgc 486722
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 113      aaaacagtactgctagtctgctac 136
                |||| |||||||||||||||||||
Sbjct: 18317999 aaaagagtactgctagtctgctac 18318022
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    cctgcgcgccgatccggccg 171
              ||||||||||||||||||||
Sbjct: 811378 cctgcgcgccgatccggccg 811397
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>gb|AY088753.1| Arabidopsis thaliana clone 94231 mRNA, complete sequence
          Length = 939

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 459 tccgagcttttcattatcctcagcctcttgca 490
           ||||| ||||||||||| |||| |||||||||
Sbjct: 598 tccgatcttttcattattctcaacctcttgca 567
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463G11
          Length = 154188

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 113   aaaacagtactgctagtctgctac 136
             |||| |||||||||||||||||||
Sbjct: 32735 aaaagagtactgctagtctgctac 32758
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>dbj|AB022218.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MJK13
          Length = 82893

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 459   tccgagcttttcattatcctcagcctcttgca 490
             ||||| ||||||||||| |||| |||||||||
Sbjct: 79779 tccgatcttttcattattctcaacctcttgca 79748
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>dbj|AK109310.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-F03, full
           insert sequence
          Length = 767

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 152 cctgcgcgccgatccggccg 171
           ||||||||||||||||||||
Sbjct: 513 cctgcgcgccgatccggccg 494
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     cctgcgcgccgatccggccg 171
               ||||||||||||||||||||
Sbjct: 2320525 cctgcgcgccgatccggccg 2320544



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    ctacctgcgcgccgatccgg 168
              ||||||||||||||||||||
Sbjct: 292295 ctacctgcgcgccgatccgg 292276
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>emb|CT027635.9| Zebrafish DNA sequence from clone CH73-366I20 in linkage group 2,
             complete sequence
          Length = 85958

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 495   gagatgaacatgctgcaaaaccaa 518
             |||||||||||||||||| |||||
Sbjct: 19333 gagatgaacatgctgcaacaccaa 19310
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     cctgcgcgccgatccggccg 171
               ||||||||||||||||||||
Sbjct: 2930868 cctgcgcgccgatccggccg 2930887
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>gb|AC126801.5| Mus musculus BAC clone RP24-511J6 from 8, complete sequence
          Length = 157089

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 565   tatgcaaattaattaagatg 584
             ||||||||||||||||||||
Sbjct: 44263 tatgcaaattaattaagatg 44244
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>gb|U49075.1|ATU49075 Arabidopsis thaliana early auxin-induced (IAA19) mRNA, partial cds
          Length = 620

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 459 tccgagcttttcattatcctcagcctcttgca 490
           ||||| ||||||||||| |||| |||||||||
Sbjct: 396 tccgatcttttcattattctcaacctcttgca 365
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>emb|AL929169.7| Zebrafish DNA sequence from clone BUSM1-30C14 in linkage group 1,
             complete sequence
          Length = 88917

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 495   gagatgaacatgctgcaaaaccaa 518
             |||||||||||||||||| |||||
Sbjct: 43334 gagatgaacatgctgcaacaccaa 43357
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>gb|AY669798.1| Arabidopsis thaliana clone C105336 IAA19 (At3g15540) mRNA, complete
           cds
          Length = 625

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 459 tccgagcttttcattatcctcagcctcttgca 490
           ||||| ||||||||||| |||| |||||||||
Sbjct: 551 tccgatcttttcattattctcaacctcttgca 520
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>dbj|AB004933.1| Vigna radiata mRNA for Aux22e, complete cds
          Length = 1006

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 471 attatcctcagcctcttgcaggacgagatgaacatg 506
           ||||| ||||||||||||||||| || | |||||||
Sbjct: 649 attattctcagcctcttgcaggaggatacgaacatg 614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,236,098
Number of Sequences: 3902068
Number of extensions: 4236098
Number of successful extensions: 81573
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80540
Number of HSP's gapped (non-prelim): 1033
length of query: 610
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 587
effective length of database: 17,143,297,704
effective search space: 10063115752248
effective search space used: 10063115752248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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