ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd26l09 |
|---|---|
| Clone Library Name | barley_pub |
>GDIB_PONPY (Q5RCE1) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 42.0 bits (97), Expect = 6e-04 Identities = 17/28 (60%), Positives = 22/28 (78%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F+S +YDATTHFETT D+ N+Y +TG Sbjct: 399 FISRTYDATTHFETTCDDIKNIYKRMTG 426
>GDIB_HUMAN (P50395) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 42.0 bits (97), Expect = 6e-04 Identities = 17/28 (60%), Positives = 22/28 (78%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F+S +YDATTHFETT D+ N+Y +TG Sbjct: 399 FISRTYDATTHFETTCDDIKNIYKRMTG 426
>GDIB_CANFA (O97556) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 42.0 bits (97), Expect = 6e-04 Identities = 17/28 (60%), Positives = 22/28 (78%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F+S +YDATTHFETT D+ N+Y +TG Sbjct: 399 FISRTYDATTHFETTCDDIKNIYKRMTG 426
>GDIB_RAT (P50399) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 40.0 bits (92), Expect = 0.002 Identities = 16/28 (57%), Positives = 22/28 (78%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F+S +YDATTHFETT D+ ++Y +TG Sbjct: 399 FISRAYDATTHFETTCDDIKDIYKRMTG 426
>GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 40.0 bits (92), Expect = 0.002 Identities = 16/28 (57%), Positives = 22/28 (78%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F+S +YDATTHFETT D+ ++Y +TG Sbjct: 399 FISRAYDATTHFETTCDDIKDIYKRMTG 426
>GDIB_PIG (Q6Q7J2) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 39.7 bits (91), Expect = 0.003 Identities = 16/28 (57%), Positives = 22/28 (78%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F+S +YDATTHFETT D+ ++Y +TG Sbjct: 399 FISRTYDATTHFETTCGDIKDIYKRMTG 426
>GDIA_RAT (P50398) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 38.1 bits (87), Expect = 0.009 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F S SYDATTHFETT D+ ++Y + G Sbjct: 399 FCSCSYDATTHFETTCNDIKDIYKRMAG 426
>GDIA_PONPY (Q7YQM0) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 38.1 bits (87), Expect = 0.009 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F S SYDATTHFETT D+ ++Y + G Sbjct: 399 FCSCSYDATTHFETTCNDIKDIYKRMAG 426
>GDIA_PANTR (P60028) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 38.1 bits (87), Expect = 0.009 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F S SYDATTHFETT D+ ++Y + G Sbjct: 399 FCSCSYDATTHFETTCNDIKDIYKRMAG 426
>GDIA_MOUSE (P50396) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 38.1 bits (87), Expect = 0.009 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F S SYDATTHFETT D+ ++Y + G Sbjct: 399 FCSCSYDATTHFETTCNDIKDIYKRMAG 426
>GDIA_MACFA (Q8HXX7) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 38.1 bits (87), Expect = 0.009 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F S SYDATTHFETT D+ ++Y + G Sbjct: 399 FCSCSYDATTHFETTCNDIKDIYKRMAG 426
>GDIA_HUMAN (P31150) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4) (Oligophrenin-2) Length = 447 Score = 38.1 bits (87), Expect = 0.009 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F S SYDATTHFETT D+ ++Y + G Sbjct: 399 FCSCSYDATTHFETTCNDIKDIYKRMAG 426
>GDIA_CANFA (O97555) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) Length = 447 Score = 38.1 bits (87), Expect = 0.009 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F S SYDATTHFETT D+ ++Y + G Sbjct: 399 FCSCSYDATTHFETTCNDIKDIYKRMAG 426
>GDIA_BOVIN (P21856) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)| (Guanosine diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A GDI) Length = 447 Score = 38.1 bits (87), Expect = 0.009 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F S SYDATTHFETT D+ ++Y + G Sbjct: 399 FCSCSYDATTHFETTCNDIKDIYKRMAG 426
>GDIB_BOVIN (P50397) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) Length = 445 Score = 37.7 bits (86), Expect = 0.012 Identities = 15/28 (53%), Positives = 21/28 (75%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 F+S +YDATTHFETT D+ ++Y + G Sbjct: 399 FISRTYDATTHFETTCDDIKDIYKRMMG 426
>GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation inhibitor 1| Length = 440 Score = 34.3 bits (77), Expect = 0.13 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 ++S S DAT+HFET DV ++Y +TG Sbjct: 399 YISKSVDATSHFETLTCDVRDIYKRMTG 426
>GDI1_YEAST (P39958) Rab GDP-dissociation inhibitor (Rab GDI) (Secretory| pathway GDP dissociation inhibitor) Length = 451 Score = 33.5 bits (75), Expect = 0.22 Identities = 13/28 (46%), Positives = 21/28 (75%) Frame = -1 Query: 429 FVSSSYDATTHFETTVTDVLNMYTLITG 346 ++S SYDA++HFE+ DV ++Y +TG Sbjct: 410 YLSRSYDASSHFESMTDDVKDIYFRVTG 437
>TAAR2_MOUSE (Q5QD17) Trace amine-associated receptor 2 (G-protein coupled| receptor 58) Length = 339 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -3 Query: 154 YAKLLSVEWCWFPSLTSLLIHWVVNIILY*QWL*HVDVRLVDVFYS 17 Y+ + SVE CW+ LT IH+ +++L + H+ VD FY+ Sbjct: 87 YSMVRSVENCWYFGLTFCKIHYSFDLMLSITSIFHLCSVAVDRFYA 132
>TAAR2_RAT (Q5QD25) Trace amine-associated receptor 2 (G-protein coupled| receptor 58) Length = 339 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -3 Query: 154 YAKLLSVEWCWFPSLTSLLIHWVVNIILY*QWL*HVDVRLVDVFYS 17 Y+ + SVE CW+ LT IH+ +++L + H+ +D FY+ Sbjct: 87 YSMVRSVENCWYFGLTFCKIHYSFDLMLSITSIFHLCSVAIDRFYA 132
>TAAR2_HUMAN (Q9P1P5) Trace amine-associated receptor 2 (G-protein coupled| receptor 58) Length = 351 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = -3 Query: 154 YAKLLSVEWCWFPSLTSLLIHWVVNIILY*QWL*HVDVRLVDVFYSYTY 8 Y+ + SVE CW+ LT I++ +++L + H+ +D FY+ Y Sbjct: 99 YSMIRSVENCWYFGLTFCKIYYSFDLMLSITSIFHLCSVAIDRFYAICY 147
>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| Length = 487 Score = 29.3 bits (64), Expect = 4.1 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 237 WCTSRKYVLKKILGLMRSNTLLQRWQH 317 +CTS K+V+ L +++ + LQ W H Sbjct: 187 YCTSAKHVINMCLNVIKVSVYLQNWSH 213
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 29.3 bits (64), Expect = 4.1 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 237 WCTSRKYVLKKILGLMRSNTLLQRWQH 317 +CTS K+V+ L +++ + LQ W H Sbjct: 171 YCTSAKHVINMCLNVIKVSVYLQNWSH 197
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 29.3 bits (64), Expect = 4.1 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 237 WCTSRKYVLKKILGLMRSNTLLQRWQH 317 +CTS K+V+ L +++ + LQ W H Sbjct: 171 YCTSAKHVINMCLNVIKVSVYLQNWSH 197
>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) (MFH protein) Length = 471 Score = 29.3 bits (64), Expect = 4.1 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 237 WCTSRKYVLKKILGLMRSNTLLQRWQH 317 +CTS K+V+ L +++ + LQ W H Sbjct: 171 YCTSAKHVINMCLNVIKVSVYLQNWSH 197
>APA2_YEAST (P22108) 5',5'''-P-1,P-4-tetraphosphate phosphorylase 2 (EC| 2.7.7.53) (Diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase) (AP-4-A phosphorylase) (Ap4A phosphorylase II) (AP,A phosphorylase) (ATP adenylyltransferase) Length = 325 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%) Frame = -2 Query: 233 ESYCVMVTCDISCVLCRS---SGPRLLAALREIIICGMVLV 120 +SY V++T CV+ RS SGP L+ + CGM+LV Sbjct: 247 KSYNVLLTKKWICVVPRSHAKSGPPLMLNINSTGYCGMILV 287
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = -2 Query: 266 LQDILPGGTPPESYCVMVTCDISCVLCRSSGPRLL 162 +Q LP G PP TC I C+LC S P L Sbjct: 573 VQPPLPPGAPPPP-----TCSIECLLCLLSSPNSL 602
>YBA9_YEAST (P32789) Hypothetical 76.4 kDa protein in SCT1-HIR1 intergenic| region Length = 676 Score = 28.5 bits (62), Expect = 7.1 Identities = 7/22 (31%), Positives = 16/22 (72%) Frame = -1 Query: 72 CTNNGFSMLMSVLWMCSTVIHI 7 C+N +S +S+ W CS+++++ Sbjct: 499 CSNIDYSQALSIFWQCSSILYV 520
>RFBX_SALTI (Q99191) Putative O-antigen transporter| Length = 432 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/32 (50%), Positives = 23/32 (71%) Frame = -2 Query: 155 LREIIICGMVLVSFVNFLIDPLGCKHYSVLTM 60 L +III G+ LVS V FL++ LG + Y+V T+ Sbjct: 21 LSKIIIAGVQLVS-VKFLLEILGEESYAVFTL 51
>LAMC1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2 chain)| Length = 1609 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%) Frame = -2 Query: 245 GTPPESYCV---MVTCDISCVLCRSSGPRL 165 GTPPE YCV + SC LC + P L Sbjct: 70 GTPPEEYCVQTGVTGVTKSCHLCDAGQPHL 99
>SYFA_CAMJR (Q5HUR1) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 330 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -2 Query: 206 DISCVLCRSSGPRLL--AALREIIICGMVLVSFVNFL 102 DISCV C+ G R+ E++ CG+V + NF+ Sbjct: 252 DISCVFCKGKGCRVCKHTGWLEVLGCGIVDPNVYNFV 288
>SYFA_CAMJE (Q9PP34) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 330 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = -2 Query: 206 DISCVLCRSSGPRLL--AALREIIICGMVLVSFVNFL 102 DISCV C+ G R+ E++ CG+V + NF+ Sbjct: 252 DISCVFCKGKGCRVCKHTGWLEVLGCGIVDPNVYNFV 288
>Y209_ENCCU (Q8SWH3) Hypothetical protein ECU02_0090| Length = 258 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -2 Query: 272 YFLQDILPGGTPPESYCVMVTCDISCVLCRSSGPRLLAALREIIICGMVLVSFVNFLI 99 +F ILP P +Y + +CD ++G +L L M+L+S++ FL+ Sbjct: 121 FFYSIILPSFFIPPTYLLSTSCDFITTSFTATGINILVDL-------MILLSYLTFLL 171 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,021,825 Number of Sequences: 219361 Number of extensions: 1068616 Number of successful extensions: 2384 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2318 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2384 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
