ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27a03 |
|---|---|
| Clone Library Name | barley_pub |
>YJBH_ECOLI (P32689) Hypothetical lipoprotein yjbH precursor| Length = 698 Score = 35.8 bits (81), Expect = 0.13 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Frame = +3 Query: 288 RYCHHDASYQETGAAD---CRHSPNLIKLLFSPL*FNGETSQQDKQPPTIYCETKKGHSG 458 +YC+ D SY++ G+ D H P + F G Q QP + E + G Sbjct: 177 KYCYRDNSYKQAGSIDGSQMFHGPASL--------FGGVEYQTPWQPLRLKLE----YEG 224 Query: 459 DRYDEDFADQLNQR----IVVYSKVHPNTDLNCIYDTINGYVY 575 + Y +DFA +L Q+ + +V D+N Y+ N +++ Sbjct: 225 NNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMF 267
>RXFP1_HUMAN (Q9HBX9) Relaxin receptor 1 (Relaxin family peptide receptor 1)| (Leucine-rich repeat-containing G-protein coupled receptor 7) Length = 757 Score = 32.3 bits (72), Expect = 1.5 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = -2 Query: 506 DNPLVELVSKIFIVSVSAVALLGFAVYGGRLFVLLRRFPIESKGRKKKLYEVGTVTTICC 327 +N L ++ ++F+ VSAV G +FV+ R I S + KLY + ++ ++CC Sbjct: 400 ENLLASIIQRVFVWVVSAVTCF------GNIFVICMRPYIRS---ENKLYAM-SIISLCC 449 Query: 326 TCFLIRCIVVAISAFD 279 L+ + I FD Sbjct: 450 ADCLMGIYLFVIGGFD 465
>CASC5_MOUSE (Q66JQ7) Protein CASC5 (Cancer susceptibility candidate gene 5| protein homolog) Length = 1612 Score = 30.8 bits (68), Expect = 4.3 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = +2 Query: 224 YNRRNLELDDPKPPKKHQHQMQILPPRCILSGNRCSRLSSQ--SQPHKASFFAPLIQWGN 397 Y+ N E D+ + P + QH + PPR L +C ++Q + P K + Sbjct: 5 YSEANEENDNTQRPVRRQHSSILKPPRSPLQDLKCGNQTNQEPNPPRKRKSSRRVSFADT 64 Query: 398 VSARQTASH 424 + QT SH Sbjct: 65 IKVFQTESH 73
>PAO_MAIZE (O64411) Polyamine oxidase precursor (EC 1.5.3.11)| Length = 500 Score = 30.4 bits (67), Expect = 5.6 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = -2 Query: 560 NSIVYAIQVCIWVYLGINDNPLVELVSKIFIVSVSAVALLGFAVYGGRLFVLLRRFPIES 381 NS+ A V + LG+ + L++ K+ V A+ AVY R+F E Sbjct: 282 NSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEG 341 Query: 380 KGRKKKLY 357 KGR+ LY Sbjct: 342 KGREFFLY 349
>YADH_SHIFL (P0AFN9) Inner membrane transport permease yadH| Length = 256 Score = 30.4 bits (67), Expect = 5.6 Identities = 23/81 (28%), Positives = 33/81 (40%) Frame = -2 Query: 659 FSAYTLLVLFWAEIYHQARSLPTDKLRIIYVAVNSIVYAIQVCIWVYLGINDNPLVELVS 480 F + TLL FW + H +N IVY I + +LGIND PLV Sbjct: 188 FYSLTLLPPFWQGLSH----------------LNPIVYMISGFRYGFLGINDVPLVTTFG 231 Query: 479 KIFIVSVSAVALLGFAVYGGR 417 + + V+ + + GR Sbjct: 232 VLVVFIVAFYLICWSLIQRGR 252
>YADH_ECOLI (P0AFN6) Inner membrane transport permease yadH| Length = 256 Score = 30.4 bits (67), Expect = 5.6 Identities = 23/81 (28%), Positives = 33/81 (40%) Frame = -2 Query: 659 FSAYTLLVLFWAEIYHQARSLPTDKLRIIYVAVNSIVYAIQVCIWVYLGINDNPLVELVS 480 F + TLL FW + H +N IVY I + +LGIND PLV Sbjct: 188 FYSLTLLPPFWQGLSH----------------LNPIVYMISGFRYGFLGINDVPLVTTFG 231 Query: 479 KIFIVSVSAVALLGFAVYGGR 417 + + V+ + + GR Sbjct: 232 VLVVFIVAFYLICWSLIQRGR 252
>YADH_ECOL6 (P0AFN7) Inner membrane transport permease yadH| Length = 256 Score = 30.4 bits (67), Expect = 5.6 Identities = 23/81 (28%), Positives = 33/81 (40%) Frame = -2 Query: 659 FSAYTLLVLFWAEIYHQARSLPTDKLRIIYVAVNSIVYAIQVCIWVYLGINDNPLVELVS 480 F + TLL FW + H +N IVY I + +LGIND PLV Sbjct: 188 FYSLTLLPPFWQGLSH----------------LNPIVYMISGFRYGFLGINDVPLVTTFG 231 Query: 479 KIFIVSVSAVALLGFAVYGGR 417 + + V+ + + GR Sbjct: 232 VLVVFIVAFYLICWSLIQRGR 252
>YADH_ECO57 (P0AFN8) Inner membrane transport permease yadH| Length = 256 Score = 30.4 bits (67), Expect = 5.6 Identities = 23/81 (28%), Positives = 33/81 (40%) Frame = -2 Query: 659 FSAYTLLVLFWAEIYHQARSLPTDKLRIIYVAVNSIVYAIQVCIWVYLGINDNPLVELVS 480 F + TLL FW + H +N IVY I + +LGIND PLV Sbjct: 188 FYSLTLLPPFWQGLSH----------------LNPIVYMISGFRYGFLGINDVPLVTTFG 231 Query: 479 KIFIVSVSAVALLGFAVYGGR 417 + + V+ + + GR Sbjct: 232 VLVVFIVAFYLICWSLIQRGR 252
>EMSY_BRARE (Q7ZUV7) Protein EMSY| Length = 1173 Score = 30.4 bits (67), Expect = 5.6 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 12/81 (14%) Frame = +1 Query: 310 LIRKQVQQIVVTVPTS*SFFFRPFDSMGKRLSK-----TNSLPPYTA-------KPRRAT 453 ++ K+V ++ VT P + S G ++S NSLPP+ + KP T Sbjct: 216 VLLKEVPKVAVTAPGPKTITLPV--SGGPKISNLMQSIANSLPPHMSPVKITFTKPSTQT 273 Query: 454 AETDTMKILLTSSTNGLSFIP 516 T T K+++ +++ +F+P Sbjct: 274 TNTTTQKVIIVTTSPSSNFVP 294
>NORM_BACHD (Q9KEJ2) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 458 Score = 29.6 bits (65), Expect = 9.6 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Frame = -2 Query: 575 IYVAVNSIVYAIQVCIWVYLGI---NDNPLVELVSKIFIVSVS-AVALLGFAVYGGRLFV 408 ++ +N ++ A+ I +G +D P V L +++S AV L+G V L Sbjct: 60 VFTGLNGVLLALTPIIAQSIGAEKRDDVPYVFLQGLYLSIAISIAVILIGAVV----LDP 115 Query: 407 LLRRFPIESK-GRKKKLYEVGTVTTICCTCFL--IRCIVVAISAFDADVSLEVLDHPILD 237 +L +E + GR K Y +G I IRC++ ++ + + +L PI Sbjct: 116 ILSAMSLEDEVGRIAKEYLIGLAFGIVPLFIYTTIRCLIDSLGETRVTMFITLLSLPINI 175 Query: 236 FFYYML 219 FF Y+L Sbjct: 176 FFNYVL 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 101,082,317 Number of Sequences: 219361 Number of extensions: 2121183 Number of successful extensions: 5368 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5201 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5367 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7252940416 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
