ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476360.1| Oryza sativa (japonica cultivar-group), mRNA 555 e-155
2dbj|AK066373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 555 e-155
3ref|NM_184948.1| Oryza sativa (japonica cultivar-group), mRNA 204 3e-49
4dbj|AK068863.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
6dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
7gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJN... 62 3e-06
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 3e-06
9gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A... 62 3e-06
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 3e-06
11gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome... 52 0.003
12gb|BT013938.1| Lycopersicon esculentum clone 132961F, mRNA sequence 44 0.63
13emb|Z50033.1|CACSPC C.acetobutylicum cspC gene 44 0.63
14dbj|AB193043.1| Lycopersicon esculentum LeTH3 mRNA for tobamovir... 44 0.63
15gb|AC122324.4| Mus musculus BAC clone RP23-333I5 from chromosome... 42 2.5
16gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Canc... 42 2.5
17gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, comp... 42 2.5
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
19dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
20dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.5
21gb|AC101992.11| Mus musculus chromosome 3, clone RP24-377J3, com... 42 2.5
22ref|NM_118299.2| Arabidopsis thaliana TOM1 (TOBAMOVIRUS MULTIPLI... 40 9.8
23gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 9.8
24ref|XM_635609.1| Dictyostelium discoideum hypothetical protein (... 40 9.8
25gb|AC115920.11| Mus musculus chromosome 1, clone RP24-496H1, com... 40 9.8
26gb|AC158617.9| Mus musculus 10 BAC RP23-283O2 (Roswell Park Canc... 40 9.8
27ref|XM_824340.1| Trypanosoma brucei TREU927 hypothetical protein... 40 9.8
28gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome... 40 9.8
29gb|AC122258.4| Mus musculus BAC clone RP23-182F18 from 7, comple... 40 9.8
30gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complet... 40 9.8
31gb|AC122307.4| Mus musculus BAC clone RP23-287C21 from 12, compl... 40 9.8
32gb|AC101490.8| Mus musculus chromosome 3, clone RP23-188O2, comp... 40 9.8
33gb|AC010266.9| Homo sapiens chromosome 5 clone CTC-471C19, compl... 40 9.8
34gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete se... 40 9.8
35emb|AL662918.7| Human DNA sequence from clone RP11-176B3 on chro... 40 9.8
36emb|AL109917.22|HSDJ140A9 Human DNA sequence from clone RP1-140A... 40 9.8
37gb|AY079319.1| Arabidopsis thaliana unknown protein (At4g21790) ... 40 9.8
38gb|AY046049.1| Arabidopsis thaliana unknown protein (At4g21790) ... 40 9.8
39gb|AC008742.9| Homo sapiens chromosome 19 clone CTD-2553C6, comp... 40 9.8
40gb|AF399011.1| Pseudomonas phage phiKZ, complete genome 40 9.8
41tpg|BK001428.1| TPA: TPA_exp: Homo sapiens NOELIN2_V1 (OLFM2) ge... 40 9.8
42gb|AC154626.2| Mus musculus BAC clone RP23-311B8 from chromosome... 40 9.8
43gb|AC084013.5| Homo sapiens BAC clone RP11-169I13 from 2, comple... 40 9.8
44gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosom... 40 9.8
45gb|DQ163920.1| Bacteriophage SD1-M, complete genome 40 9.8
46gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complet... 40 9.8
47gb|AC111080.9| Mus musculus chromosome 3, clone RP23-132D7, comp... 40 9.8
48gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, comple... 40 9.8
49emb|AL928587.7| Mouse DNA sequence from clone RP23-282M14 on chr... 40 9.8
50dbj|AB016925.1| Arabidopsis thaliana TOM1 mRNA, complete cds 40 9.8 
>ref|XM_476360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1205

 Score =  555 bits (280), Expect = e-155
 Identities = 482/548 (87%), Gaps = 1/548 (0%)
 Strand = Plus / Minus

                                                                       
Query: 160 cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 219
           |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 916 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 857

                                                                       
Query: 220 aacatataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagca 279
           |||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |
Sbjct: 856 aacatatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaa 797

                                                                       
Query: 280 tcaaatgcagatattgccaccacgatgcatcttatcaggaaacaggtgcagcagattgtc 339
           |||||||| ||||| |||||||| ||||| |||||||||||||| |  ||||||||||  
Sbjct: 796 tcaaatgctgatatcgccaccactatgcaccttatcaggaaacaagcacagcagattgca 737

                                                                       
Query: 340 gtcacagtcccaacctcataaagcttcttttttcgcccctttgattcaatggggaaacgt 399
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 736 gtcactgtcccaacctcataaagcttcttttttcgccccttagattcaatggggaaacgt 677

                                                                       
Query: 400 ctcagcaagacaaacagcctcccaccatatactgcgaaaccaagaagggccacagcggag 459
           ||||||||||  |||||||| |||||||||||||  || |||||||| ||||||   |||
Sbjct: 676 ctcagcaagaagaacagccttccaccatatactgaaaagccaagaagagccacaaaagag 617

                                                                       
Query: 460 acagatacgatgaagattttgctgaccagctcaaccaacggattgtcgtttattccaagg 519
           |||  ||| ||||||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct: 616 acaactactatgaagattttgctgaccagctcaaccaatgggttgtcgttgattccgagg 557

                                                                       
Query: 520 tacacccaaatacagacctgaattgcatatacgatactattaacggctacgtatataatc 579
           || ||||||||||| ||||||||||  || | |||   ||| ||||||| ||||||||||
Sbjct: 556 tatacccaaatacaaacctgaattgtgtaaatgatggcattgacggctatgtatataatc 497

                                                                       
Query: 580 cttaacttatcggttgggagactcctagcctgatggtatatttctgcccagaaaagaaca 639
           ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 496 cttaacttatctgttgggaggctcctggcctgatggtatatttctgcccagaagagaaca 437

                                                                       
Query: 640 agtaaggtgtaggccgagaagaacagtaagccggggagggtctagtaacaccaacttata 699
           || |  |||||||  ||||| ||||  |||||||||| ||||||| | ||||||||||||
Sbjct: 436 agcagagtgtaggtggagaaaaacaacaagccgggga-ggtctagcagcaccaacttata 378

                   
Query: 700 aacttttg 707
           ||||||||
Sbjct: 377 aacttttg 370
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>dbj|AK066373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062G10, full
           insert sequence
          Length = 1205

 Score =  555 bits (280), Expect = e-155
 Identities = 482/548 (87%), Gaps = 1/548 (0%)
 Strand = Plus / Minus

                                                                       
Query: 160 cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 219
           |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 916 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 857

                                                                       
Query: 220 aacatataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagca 279
           |||||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |
Sbjct: 856 aacatatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaa 797

                                                                       
Query: 280 tcaaatgcagatattgccaccacgatgcatcttatcaggaaacaggtgcagcagattgtc 339
           |||||||| ||||| |||||||| ||||| |||||||||||||| |  ||||||||||  
Sbjct: 796 tcaaatgctgatatcgccaccactatgcaccttatcaggaaacaagcacagcagattgca 737

                                                                       
Query: 340 gtcacagtcccaacctcataaagcttcttttttcgcccctttgattcaatggggaaacgt 399
           ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 736 gtcactgtcccaacctcataaagcttcttttttcgccccttagattcaatggggaaacgt 677

                                                                       
Query: 400 ctcagcaagacaaacagcctcccaccatatactgcgaaaccaagaagggccacagcggag 459
           ||||||||||  |||||||| |||||||||||||  || |||||||| ||||||   |||
Sbjct: 676 ctcagcaagaagaacagccttccaccatatactgaaaagccaagaagagccacaaaagag 617

                                                                       
Query: 460 acagatacgatgaagattttgctgaccagctcaaccaacggattgtcgtttattccaagg 519
           |||  ||| ||||||||||||||||||||||||||||| || |||||||| ||||| |||
Sbjct: 616 acaactactatgaagattttgctgaccagctcaaccaatgggttgtcgttgattccgagg 557

                                                                       
Query: 520 tacacccaaatacagacctgaattgcatatacgatactattaacggctacgtatataatc 579
           || ||||||||||| ||||||||||  || | |||   ||| ||||||| ||||||||||
Sbjct: 556 tatacccaaatacaaacctgaattgtgtaaatgatggcattgacggctatgtatataatc 497

                                                                       
Query: 580 cttaacttatcggttgggagactcctagcctgatggtatatttctgcccagaaaagaaca 639
           ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 496 cttaacttatctgttgggaggctcctggcctgatggtatatttctgcccagaagagaaca 437

                                                                       
Query: 640 agtaaggtgtaggccgagaagaacagtaagccggggagggtctagtaacaccaacttata 699
           || |  |||||||  ||||| ||||  |||||||||| ||||||| | ||||||||||||
Sbjct: 436 agcagagtgtaggtggagaaaaacaacaagccgggga-ggtctagcagcaccaacttata 378

                   
Query: 700 aacttttg 707
           ||||||||
Sbjct: 377 aacttttg 370
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>ref|NM_184948.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1341

 Score =  204 bits (103), Expect = 3e-49
 Identities = 223/263 (84%)
 Strand = Plus / Minus

                                                                        
Query: 166  ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtcaacata 225
            ||||||||||| || |||||||| ||||| || || || ||||||||||| || ||||||
Sbjct: 1043 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctccgttaacata 984

                                                                        
Query: 226  taatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaaat 285
            || || |||||||| || |||||||||||||||||||| | ||| | ||||| |||||||
Sbjct: 983  tagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatcaaat 924

                                                                        
Query: 286  gcagatattgccaccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcaca 345
            |  || || |||||||| ||||||||||||| |||||| ||| |||| ||||  ||||||
Sbjct: 923  gatgacatcgccaccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcaca 864

                                                                        
Query: 346  gtcccaacctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagc 405
            |||||||||||||| ||||||||| | || |||||||||||||| || ||||| ||||||
Sbjct: 863  gtcccaacctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagc 804

                                   
Query: 406  aagacaaacagcctcccaccata 428
            | || ||| ||||| ||||||||
Sbjct: 803  atgaaaaatagccttccaccata 781



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                       
Query: 514 ccaaggtacacccaaatacagacctgaattgcatatacgatactattaacggctacgtat 573
           |||||||| | ||||||||| ||||| ||| ||||||  | || |||||| || | ||||
Sbjct: 695 ccaaggtatatccaaatacaaacctggattacatatataacaccattaactgccatgtat 636

                                                                       
Query: 574 ataatccttaacttatcggttgggagactcctagcctgatggtatatttctgcccagaaa 633
           |||||||||| ||| || || || ||| || |||||||||||||||||||||||||||| 
Sbjct: 635 ataatccttagcttgtcagtgggaagattcttagcctgatggtatatttctgcccagaac 576

                     
Query: 634 agaacaagta 643
           || |||||||
Sbjct: 575 agcacaagta 566
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>dbj|AK068863.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P13, full
           insert sequence
          Length = 1929

 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/132 (86%)
 Strand = Plus / Minus

                                                                       
Query: 297 caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacctc 356
           |||||| ||||||||||||| |||||| ||| |||| ||||  |||||||||||||||||
Sbjct: 892 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacctc 833

                                                                       
Query: 357 ataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagacaaacag 416
           ||| ||||||||| | || |||||||||||||| || ||||| ||||||| || ||| ||
Sbjct: 832 atagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaaaatag 773

                       
Query: 417 cctcccaccata 428
           ||| ||||||||
Sbjct: 772 ccttccaccata 761



 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 103/121 (85%)
 Strand = Plus / Minus

                                                                        
Query: 166  ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtcaacata 225
            ||||||||||| || |||||||| ||||| || || || ||||||||||| || ||||||
Sbjct: 1631 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctccgttaacata 1572

                                                                        
Query: 226  taatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaaat 285
            || || |||||||| || |||||||||||||||||||| | ||| | ||||| |||||||
Sbjct: 1571 tagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatcaaat 1512

             
Query: 286  g 286
            |
Sbjct: 1511 g 1511



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 109/130 (83%)
 Strand = Plus / Minus

                                                                       
Query: 514 ccaaggtacacccaaatacagacctgaattgcatatacgatactattaacggctacgtat 573
           |||||||| | ||||||||| ||||| ||| ||||||  | || |||||| || | ||||
Sbjct: 675 ccaaggtatatccaaatacaaacctggattacatatataacaccattaactgccatgtat 616

                                                                       
Query: 574 ataatccttaacttatcggttgggagactcctagcctgatggtatatttctgcccagaaa 633
           |||||||||| ||| || || || ||| || |||||||||||||||||||||||||||| 
Sbjct: 615 ataatccttagcttgtcagtgggaagattcttagcctgatggtatatttctgcccagaac 556

                     
Query: 634 agaacaagta 643
           || |||||||
Sbjct: 555 agcacaagta 546
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score =  111 bits (56), Expect = 3e-21
 Identities = 65/68 (95%)
 Strand = Plus / Plus

                                                                          
Query: 352    acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
              ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  
Sbjct: 147727 acctcataaagcttcttttttcgccccttagattcaatggggaaacgtctcagcaagaag 147786

                      
Query: 412    aacagcct 419
              ||||||||
Sbjct: 147787 aacagcct 147794



 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                          
Query: 421    ccaccatatactgcgaaaccaagaagggccacagcggagacagatacgatgaagattttg 480
              |||||||||||||  || |||||||| ||||||   ||||||  ||| ||||||||||||
Sbjct: 147903 ccaccatatactgaaaagccaagaagagccacaaaagagacaactactatgaagattttg 147962

                                                                         
Query: 481    ctgaccagctcaaccaacggattgtcgtttattccaaggtacacccaaatacagacctg 539
              ||||||||||||||||| || |||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 147963 ctgaccagctcaaccaatgggttgtcgttgattccgaggtatacccaaatacaaacctg 148021



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                          
Query: 222    catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
              |||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct: 146616 catatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaatc 146675

                                 
Query: 282    aaatgcagatattgccacc 300
              |||||| ||||| ||||||
Sbjct: 146676 aaatgctgatatcgccacc 146694



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 84/96 (87%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                          
Query: 607    gcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaagaacagt 666
              |||||||||||||||||||||||||| |||||||| |  |||||||  ||||| ||||  
Sbjct: 148363 gcctgatggtatatttctgcccagaagagaacaagcagagtgtaggtggagaaaaacaac 148422

                                                  
Query: 667    aagccggggagggtctagtaacaccaacttataaac 702
              |||||||||| ||||||| | |||||||||||||||
Sbjct: 148423 aagccgggga-ggtctagcagcaccaacttataaac 148457



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                          
Query: 160    cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 219
              |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 146437 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 146496

                 
Query: 220    aac 222
              |||
Sbjct: 146497 aac 146499



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                
Query: 562    acggctacgtatataatccttaacttatcggttgggagactcctagcctg 611
              ||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 148232 acggctatgtatataatccttaacttatctgttgggaggctcctggcctg 148281



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 298    accacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
              ||||| ||||| |||||||||||||| |  ||||||||||  ||||| ||||||||||
Sbjct: 146965 accactatgcaccttatcaggaaacaagcacagcagattgcagtcactgtcccaacct 147022
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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1026C12
          Length = 170240

 Score =  111 bits (56), Expect = 3e-21
 Identities = 65/68 (95%)
 Strand = Plus / Plus

                                                                          
Query: 352    acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
              ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  
Sbjct: 147026 acctcataaagcttcttttttcgccccttagattcaatggggaaacgtctcagcaagaag 147085

                      
Query: 412    aacagcct 419
              ||||||||
Sbjct: 147086 aacagcct 147093



 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Plus

                                                                          
Query: 421    ccaccatatactgcgaaaccaagaagggccacagcggagacagatacgatgaagattttg 480
              |||||||||||||  || |||||||| ||||||   ||||||  ||| ||||||||||||
Sbjct: 147202 ccaccatatactgaaaagccaagaagagccacaaaagagacaactactatgaagattttg 147261

                                                                         
Query: 481    ctgaccagctcaaccaacggattgtcgtttattccaaggtacacccaaatacagacctg 539
              ||||||||||||||||| || |||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 147262 ctgaccagctcaaccaatgggttgtcgttgattccgaggtatacccaaatacaaacctg 147320



 Score = 93.7 bits (47), Expect = 8e-16
 Identities = 71/79 (89%)
 Strand = Plus / Plus

                                                                          
Query: 222    catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
              |||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct: 145915 catatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaatc 145974

                                 
Query: 282    aaatgcagatattgccacc 300
              |||||| ||||| ||||||
Sbjct: 145975 aaatgctgatatcgccacc 145993



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 84/96 (87%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                          
Query: 607    gcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaagaacagt 666
              |||||||||||||||||||||||||| |||||||| |  |||||||  ||||| ||||  
Sbjct: 147662 gcctgatggtatatttctgcccagaagagaacaagcagagtgtaggtggagaaaaacaac 147721

                                                  
Query: 667    aagccggggagggtctagtaacaccaacttataaac 702
              |||||||||| ||||||| | |||||||||||||||
Sbjct: 147722 aagccgggga-ggtctagcagcaccaacttataaac 147756



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                          
Query: 160    cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 219
              |||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 145736 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 145795

                 
Query: 220    aac 222
              |||
Sbjct: 145796 aac 145798



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                
Query: 562    acggctacgtatataatccttaacttatcggttgggagactcctagcctg 611
              ||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 147531 acggctatgtatataatccttaacttatctgttgggaggctcctggcctg 147580



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 298    accacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
              ||||| ||||| |||||||||||||| |  ||||||||||  ||||| ||||||||||
Sbjct: 146264 accactatgcaccttatcaggaaacaagcacagcagattgcagtcactgtcccaacct 146321
to top
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
              sequence
          Length = 151269

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                         
Query: 297    caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
              |||||| ||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||
Sbjct: 147455 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 147513



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                          
Query: 222    catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
              |||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 146772 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 146831

                   
Query: 282    aaatg 286
              |||||
Sbjct: 146832 aaatg 146836



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 608    cctgatggtatatttctgcccagaaaagaacaagta 643
              ||||||||||||||||||||||||| || |||||||
Sbjct: 148761 cctgatggtatatttctgcccagaacagcacaagta 148796



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                          
Query: 352    acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
              |||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 147821 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 147880

                      
Query: 412    aacagcct 419
              || |||||
Sbjct: 147881 aatagcct 147888



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                
Query: 166    ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 215
              ||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 146643 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 146692
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 297      caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
                |||||| ||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||
Sbjct: 20229369 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 20229427



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 222      catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
                |||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 20228686 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 20228745

                     
Query: 282      aaatg 286
                |||||
Sbjct: 20228746 aaatg 20228750



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 608      cctgatggtatatttctgcccagaaaagaacaagta 643
                ||||||||||||||||||||||||| || |||||||
Sbjct: 20230675 cctgatggtatatttctgcccagaacagcacaagta 20230710



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                            
Query: 352      acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
                |||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 20229735 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 20229794

                        
Query: 412      aacagcct 419
                || |||||
Sbjct: 20229795 aatagcct 20229802



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                     
Query: 230     agaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaa 283
               ||||||| ||||| | |||||||||||||||||||| | | ||||||| |||||
Sbjct: 8365918 agaagaagtctaggactggatgatccaaaacctccagaaatacatcaggatcaa 8365971



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 166      ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 215
                ||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 20228557 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 20228606
to top
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete
             sequence
          Length = 156929

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                        
Query: 297   caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
             |||||| ||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||
Sbjct: 24676 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 24734



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                         
Query: 222   catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
             |||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 23993 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 24052

                  
Query: 282   aaatg 286
             |||||
Sbjct: 24053 aaatg 24057



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 608   cctgatggtatatttctgcccagaaaagaacaagta 643
             ||||||||||||||||||||||||| || |||||||
Sbjct: 25982 cctgatggtatatttctgcccagaacagcacaagta 26017



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 352   acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
             |||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 25042 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 25101

                     
Query: 412   aacagcct 419
             || |||||
Sbjct: 25102 aatagcct 25109



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 166   ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 215
             ||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 23864 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 23913
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                           
Query: 297      caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
                |||||| ||||||||||||| |||||| ||| |||| ||||  ||||||||||||||||
Sbjct: 20222398 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 20222456



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 222      catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
                |||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 20221715 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 20221774

                     
Query: 282      aaatg 286
                |||||
Sbjct: 20221775 aaatg 20221779



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 608      cctgatggtatatttctgcccagaaaagaacaagta 643
                ||||||||||||||||||||||||| || |||||||
Sbjct: 20223704 cctgatggtatatttctgcccagaacagcacaagta 20223739



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                            
Query: 352      acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
                |||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 20222764 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 20222823

                        
Query: 412      aacagcct 419
                || |||||
Sbjct: 20222824 aatagcct 20222831



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                     
Query: 230     agaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaa 283
               ||||||| ||||| | |||||||||||||||||||| | | ||||||| |||||
Sbjct: 8363753 agaagaagtctaggactggatgatccaaaacctccagaaatacatcaggatcaa 8363806



 Score = 44.1 bits (22), Expect = 0.63
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                  
Query: 166      ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 215
                ||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 20221586 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 20221635
to top
>gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1664B11,
              complete sequence
          Length = 126040

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 230    agaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaa 283
              ||||||| ||||| | |||||||||||||||||||| | | ||||||| |||||
Sbjct: 103174 agaagaagtctaggactggatgatccaaaacctccagaaatacatcaggatcaa 103227
to top
>gb|BT013938.1| Lycopersicon esculentum clone 132961F, mRNA sequence
          Length = 1286

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 576 aatccttaacttatcggttgggagactcctagcctgatggtatatttctgcccagaaaag 635
           |||||| | |||||| ||||| | |||||||||||| || ||||| || ||||| || ||
Sbjct: 451 aatcctgagcttatctgttggtaaactcctagcctggtgatatatctcagcccaaaatag 392

                 
Query: 636 aacaag 641
           ||||||
Sbjct: 391 aacaag 386



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 99/125 (79%)
 Strand = Plus / Minus

                                                                       
Query: 306 gcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacctcataaagctt 365
           |||||| || |||||||||||| | || || |  ||||| |  |||||||||| ||||||
Sbjct: 721 gcatctaatgaggaaacaggtgaaacatatggcagtcaccgatccaacctcatgaagctt 662

                                                                       
Query: 366 cttttttcgcccctttgattcaatggggaaacgtctcagcaagacaaacagcctcccacc 425
           |||| | | ||| || |||||||| ||||| || | ||||| || ||| | ||| |||||
Sbjct: 661 ctttctcctccctttagattcaatagggaagcgccgcagcatgagaaataaccttccacc 602

                
Query: 426 atata 430
           |||||
Sbjct: 601 atata 597
to top
>emb|Z50033.1|CACSPC C.acetobutylicum cspC gene
          Length = 2105

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 459 gacagatacgatgaagattttgctga 484
           |||||||| |||||||||||||||||
Sbjct: 321 gacagatatgatgaagattttgctga 346
to top
>dbj|AB193043.1| Lycopersicon esculentum LeTH3 mRNA for tobamovirus multiplication 1
           homolog 3, complete cds
          Length = 1278

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 55/66 (83%)
 Strand = Plus / Minus

                                                                       
Query: 576 aatccttaacttatcggttgggagactcctagcctgatggtatatttctgcccagaaaag 635
           |||||| | |||||| ||||| | |||||||||||| || ||||| || ||||| || ||
Sbjct: 450 aatcctgagcttatctgttggtaaactcctagcctggtgatatatctcagcccaaaatag 391

                 
Query: 636 aacaag 641
           ||||||
Sbjct: 390 aacaag 385



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 99/125 (79%)
 Strand = Plus / Minus

                                                                       
Query: 306 gcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacctcataaagctt 365
           |||||| || |||||||||||| | || || |  ||||| |  |||||||||| ||||||
Sbjct: 720 gcatctaatgaggaaacaggtgaaacatatggcagtcaccgatccaacctcatgaagctt 661

                                                                       
Query: 366 cttttttcgcccctttgattcaatggggaaacgtctcagcaagacaaacagcctcccacc 425
           |||| | | ||| || |||||||| ||||| || | ||||| || ||| | ||| |||||
Sbjct: 660 ctttctcctccctttagattcaatagggaagcgccgcagcatgagaaataaccttccacc 601

                
Query: 426 atata 430
           |||||
Sbjct: 600 atata 596
to top
>gb|AC122324.4| Mus musculus BAC clone RP23-333I5 from chromosome 3, complete sequence
          Length = 243378

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 369   ttttcgcccctttgattcaat 389
             |||||||||||||||||||||
Sbjct: 79668 ttttcgcccctttgattcaat 79648
to top
>gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 156054

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 52    cagacatgtaaaattttgagcactt 76
             ||||||||||||||||||| |||||
Sbjct: 97261 cagacatgtaaaattttgaacactt 97285
to top
>gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, complete sequence
          Length = 104776

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    agacatgtaaaattttgagca 73
             |||||||||||||||||||||
Sbjct: 83592 agacatgtaaaattttgagca 83572
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 55       acatgtaaaattttgagcact 75
                |||||||||||||||||||||
Sbjct: 12611563 acatgtaaaattttgagcact 12611583
to top
>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1134_B09
          Length = 105247

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 55   acatgtaaaattttgagcact 75
            |||||||||||||||||||||
Sbjct: 8622 acatgtaaaattttgagcact 8642
to top
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     acatgtaaaattttgagcact 75
              |||||||||||||||||||||
Sbjct: 116096 acatgtaaaattttgagcact 116116
to top
>gb|AC101992.11| Mus musculus chromosome 3, clone RP24-377J3, complete sequence
          Length = 191967

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    ccagacatgtaaaattttgag 71
             |||||||||||||||||||||
Sbjct: 42478 ccagacatgtaaaattttgag 42458
to top
>ref|NM_118299.2| Arabidopsis thaliana TOM1 (TOBAMOVIRUS MULTIPLICATION 1) AT4G21790
           (TOM1) mRNA, complete cds
          Length = 1405

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 604 ctagcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaa 659
           |||||||| || ||||| ||||||||||| || ||||| |  ||||| ||||||||
Sbjct: 544 ctagcctggtgatatatctctgcccagaacagcacaagcagcgtgtatgccgagaa 489
to top
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    ataaagcttcttttttcgcc 376
              ||||||||||||||||||||
Sbjct: 976421 ataaagcttcttttttcgcc 976402
to top
>ref|XM_635609.1| Dictyostelium discoideum hypothetical protein (DDB0205608), partial
            mRNA
          Length = 9000

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  gatgatccaaaacctccaaa 267
            ||||||||||||||||||||
Sbjct: 4382 gatgatccaaaacctccaaa 4363
to top
>gb|AC115920.11| Mus musculus chromosome 1, clone RP24-496H1, complete sequence
          Length = 161759

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    atacataagcacaaagacct 128
              ||||||||||||||||||||
Sbjct: 139125 atacataagcacaaagacct 139144
to top
>gb|AC158617.9| Mus musculus 10 BAC RP23-283O2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 240410

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 378   ctttgattcaatggggaaac 397
             ||||||||||||||||||||
Sbjct: 92471 ctttgattcaatggggaaac 92452
to top
>ref|XM_824340.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.5340)
           partial mRNA
          Length = 1074

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 catcagcatcaaatgcagat 291
           ||||||||||||||||||||
Sbjct: 604 catcagcatcaaatgcagat 585
to top
>gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome 12, complete
           sequence
          Length = 183140

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 tctgtcaacatataatagaa 233
           ||||||||||||||||||||
Sbjct: 611 tctgtcaacatataatagaa 630
to top
>gb|AC122258.4| Mus musculus BAC clone RP23-182F18 from 7, complete sequence
          Length = 186441

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   ggatgatccaaaacctccaa 266
             ||||||||||||||||||||
Sbjct: 61251 ggatgatccaaaacctccaa 61270
to top
>gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complete sequence
          Length = 185953

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 695   ttataaacttttgtttggag 714
             ||||||||||||||||||||
Sbjct: 76561 ttataaacttttgtttggag 76542
to top
>gb|AC122307.4| Mus musculus BAC clone RP23-287C21 from 12, complete sequence
          Length = 194202

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   tctgtcaacatataatagaa 233
             ||||||||||||||||||||
Sbjct: 47327 tctgtcaacatataatagaa 47308
to top
>gb|AC101490.8| Mus musculus chromosome 3, clone RP23-188O2, complete sequence
          Length = 247848

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ctttgatgcttttggaaaac 24
             ||||||||||||||||||||
Sbjct: 58970 ctttgatgcttttggaaaac 58989
to top
>gb|AC010266.9| Homo sapiens chromosome 5 clone CTC-471C19, complete sequence
          Length = 129071

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 694    cttataaacttttgtttgga 713
              ||||||||||||||||||||
Sbjct: 114765 cttataaacttttgtttgga 114746
to top
>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence
          Length = 102937

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   taaaattttgagcacttcca 79
            ||||||||||||||||||||
Sbjct: 7511 taaaattttgagcacttcca 7530
to top
>emb|AL662918.7| Human DNA sequence from clone RP11-176B3 on chromosome 1, complete
            sequence
          Length = 90140

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 240  tagaattggatgatccaaaa 259
            ||||||||||||||||||||
Sbjct: 4707 tagaattggatgatccaaaa 4688
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>emb|AL109917.22|HSDJ140A9 Human DNA sequence from clone RP1-140A9 on chromosome 1p36.2-36.33
             Contains the 5' end of the GNB1 gene for guanine
             nucleotide binding protein (G protein) beta polypeptide 1,
             a novel gene, the gene for calmodulin-like protein
             (LOC163688), a novel gene (LOC339456), a novel gene
             (LOC348524), a novel gene (LOC339458, FLJ37323) , a novel
             gene ( LOC339459) similar to KIAA1751 and three CpG
             islands, complete sequence
          Length = 165191

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   agaagaaatctagaattgga 249
             ||||||||||||||||||||
Sbjct: 44050 agaagaaatctagaattgga 44031
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>gb|AY079319.1| Arabidopsis thaliana unknown protein (At4g21790) mRNA, complete cds
          Length = 907

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 604 ctagcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaa 659
           |||||||| || ||||| ||||||||||| || ||||| |  ||||| ||||||||
Sbjct: 401 ctagcctggtgatatatctctgcccagaacagcacaagcagcgtgtatgccgagaa 346
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>gb|AY046049.1| Arabidopsis thaliana unknown protein (At4g21790) mRNA, complete cds
          Length = 1433

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 604 ctagcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaa 659
           |||||||| || ||||| ||||||||||| || ||||| |  ||||| ||||||||
Sbjct: 544 ctagcctggtgatatatctctgcccagaacagcacaagcagcgtgtatgccgagaa 489
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>gb|AC008742.9| Homo sapiens chromosome 19 clone CTD-2553C6, complete sequence
          Length = 194624

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   cccaacctcataaagcttct 367
             ||||||||||||||||||||
Sbjct: 47809 cccaacctcataaagcttct 47828
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>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome
          Length = 280334

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 520   tacacccaaatacagacctgaatt 543
             |||| |||||||||||||||||||
Sbjct: 67649 tacatccaaatacagacctgaatt 67626
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>tpg|BK001428.1| TPA: TPA_exp: Homo sapiens NOELIN2_V1 (OLFM2) gene, complete cds
          Length = 84679

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   cccaacctcataaagcttct 367
             ||||||||||||||||||||
Sbjct: 57029 cccaacctcataaagcttct 57010
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>gb|AC154626.2| Mus musculus BAC clone RP23-311B8 from chromosome 14, complete sequence
          Length = 194638

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 362   gcttcttttttcgcccctttgatt 385
             |||||||||||| |||||||||||
Sbjct: 90806 gcttcttttttcccccctttgatt 90783
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>gb|AC084013.5| Homo sapiens BAC clone RP11-169I13 from 2, complete sequence
          Length = 105604

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 220   aacatataatagaagaaatctaga 243
             ||||||||||||||||| ||||||
Sbjct: 15007 aacatataatagaagaattctaga 14984
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>gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosome 7, complete sequence
          Length = 208487

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    ggatgatccaaaacctccaa 266
              ||||||||||||||||||||
Sbjct: 188645 ggatgatccaaaacctccaa 188626
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>gb|DQ163920.1| Bacteriophage SD1-M, complete genome
          Length = 281083

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 520   tacacccaaatacagacctgaatt 543
             |||| |||||||||||||||||||
Sbjct: 68744 tacatccaaatacagacctgaatt 68721
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>gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complete sequence
          Length = 211512

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 507    gtttattccaaggtacacccaaat 530
              |||||||| |||||||||||||||
Sbjct: 122044 gtttattcaaaggtacacccaaat 122021
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>gb|AC111080.9| Mus musculus chromosome 3, clone RP23-132D7, complete sequence
          Length = 202074

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      ctttgatgcttttggaaaac 24
              ||||||||||||||||||||
Sbjct: 190851 ctttgatgcttttggaaaac 190870
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>gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, complete sequence
          Length = 213473

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 507    gtttattccaaggtacacccaaat 530
              |||||||| |||||||||||||||
Sbjct: 213036 gtttattcaaaggtacacccaaat 213059
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>emb|AL928587.7| Mouse DNA sequence from clone RP23-282M14 on chromosome 2, complete
             sequence
          Length = 218618

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 695   ttataaacttttgtttggag 714
             ||||||||||||||||||||
Sbjct: 25784 ttataaacttttgtttggag 25803
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>dbj|AB016925.1| Arabidopsis thaliana TOM1 mRNA, complete cds
          Length = 1369

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 604 ctagcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaa 659
           |||||||| || ||||| ||||||||||| || ||||| |  ||||| ||||||||
Sbjct: 541 ctagcctggtgatatatctctgcccagaacagcacaagcagcgtgtatgccgagaa 486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,364,896
Number of Sequences: 3902068
Number of extensions: 6364896
Number of successful extensions: 123275
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122858
Number of HSP's gapped (non-prelim): 411
length of query: 714
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 691
effective length of database: 17,143,297,704
effective search space: 11846018713464
effective search space used: 11846018713464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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