No.
Definition
Score (bits)
E Value
1 ref|XM_476360.1| Oryza sativa (japonica cultivar-group), mRNA
555
e-155
2 dbj|AK066373.1| Oryza sativa (japonica cultivar-group) cDNA clon...
555
e-155
3 ref|NM_184948.1| Oryza sativa (japonica cultivar-group), mRNA
204
3e-49
4 dbj|AK068863.1| Oryza sativa (japonica cultivar-group) cDNA clon...
119
1e-23
5 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
111
3e-21
6 dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D...
111
3e-21
7 gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJN...
62
3e-06
8 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
62
3e-06
9 gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A...
62
3e-06
10 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
62
3e-06
11 gb|AC135495.2| Oryza sativa (japonica cultivar-group) chromosome...
52
0.003
12 gb|BT013938.1| Lycopersicon esculentum clone 132961F, mRNA sequence
44
0.63
13 emb|Z50033.1|CACSPC C.acetobutylicum cspC gene
44
0.63
14 dbj|AB193043.1| Lycopersicon esculentum LeTH3 mRNA for tobamovir...
44
0.63
15 gb|AC122324.4| Mus musculus BAC clone RP23-333I5 from chromosome...
42
2.5
16 gb|AC022495.17| Homo sapiens 3 BAC RP11-94I16 (Roswell Park Canc...
42
2.5
17 gb|AC022424.6| Homo sapiens chromosome 5 clone CTD-2297D10, comp...
42
2.5
18 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
42
2.5
19 dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic D...
42
2.5
20 dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic D...
42
2.5
21 gb|AC101992.11| Mus musculus chromosome 3, clone RP24-377J3, com...
42
2.5
22 ref|NM_118299.2| Arabidopsis thaliana TOM1 (TOBAMOVIRUS MULTIPLI...
40
9.8
23 gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
40
9.8
24 ref|XM_635609.1| Dictyostelium discoideum hypothetical protein (...
40
9.8
25 gb|AC115920.11| Mus musculus chromosome 1, clone RP24-496H1, com...
40
9.8
26 gb|AC158617.9| Mus musculus 10 BAC RP23-283O2 (Roswell Park Canc...
40
9.8
27 ref|XM_824340.1| Trypanosoma brucei TREU927 hypothetical protein...
40
9.8
28 gb|AC124486.4| Mus musculus BAC clone RP23-451E1 from chromosome...
40
9.8
29 gb|AC122258.4| Mus musculus BAC clone RP23-182F18 from 7, comple...
40
9.8
30 gb|AC123872.4| Mus musculus BAC clone RP23-254P8 from 2, complet...
40
9.8
31 gb|AC122307.4| Mus musculus BAC clone RP23-287C21 from 12, compl...
40
9.8
32 gb|AC101490.8| Mus musculus chromosome 3, clone RP23-188O2, comp...
40
9.8
33 gb|AC010266.9| Homo sapiens chromosome 5 clone CTC-471C19, compl...
40
9.8
34 gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete se...
40
9.8
35 emb|AL662918.7| Human DNA sequence from clone RP11-176B3 on chro...
40
9.8
36 emb|AL109917.22|HSDJ140A9 Human DNA sequence from clone RP1-140A...
40
9.8
37 gb|AY079319.1| Arabidopsis thaliana unknown protein (At4g21790) ...
40
9.8
38 gb|AY046049.1| Arabidopsis thaliana unknown protein (At4g21790) ...
40
9.8
39 gb|AC008742.9| Homo sapiens chromosome 19 clone CTD-2553C6, comp...
40
9.8
40 gb|AF399011.1| Pseudomonas phage phiKZ, complete genome
40
9.8
41 tpg|BK001428.1| TPA: TPA_exp: Homo sapiens NOELIN2_V1 (OLFM2) ge...
40
9.8
42 gb|AC154626.2| Mus musculus BAC clone RP23-311B8 from chromosome...
40
9.8
43 gb|AC084013.5| Homo sapiens BAC clone RP11-169I13 from 2, comple...
40
9.8
44 gb|AC175034.1| Mus musculus BAC clone RP23-204E23 from chromosom...
40
9.8
45 gb|DQ163920.1| Bacteriophage SD1-M, complete genome
40
9.8
46 gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complet...
40
9.8
47 gb|AC111080.9| Mus musculus chromosome 3, clone RP23-132D7, comp...
40
9.8
48 gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, comple...
40
9.8
49 emb|AL928587.7| Mouse DNA sequence from clone RP23-282M14 on chr...
40
9.8
50 dbj|AB016925.1| Arabidopsis thaliana TOM1 mRNA, complete cds
40
9.8
>dbj|AP008213.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
complete sequence
Length = 29644043
Score = 111 bits (56), Expect = 3e-21
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 352 acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 147727 acctcataaagcttcttttttcgccccttagattcaatggggaaacgtctcagcaagaag 147786
Query: 412 aacagcct 419
||||||||
Sbjct: 147787 aacagcct 147794
Score = 109 bits (55), Expect = 1e-20
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 421 ccaccatatactgcgaaaccaagaagggccacagcggagacagatacgatgaagattttg 480
||||||||||||| || |||||||| |||||| |||||| ||| ||||||||||||
Sbjct: 147903 ccaccatatactgaaaagccaagaagagccacaaaagagacaactactatgaagattttg 147962
Query: 481 ctgaccagctcaaccaacggattgtcgtttattccaaggtacacccaaatacagacctg 539
||||||||||||||||| || |||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 147963 ctgaccagctcaaccaatgggttgtcgttgattccgaggtatacccaaatacaaacctg 148021
Score = 93.7 bits (47), Expect = 8e-16
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 222 catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
|||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct: 146616 catatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaatc 146675
Query: 282 aaatgcagatattgccacc 300
|||||| ||||| ||||||
Sbjct: 146676 aaatgctgatatcgccacc 146694
Score = 87.7 bits (44), Expect = 5e-14
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 607 gcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaagaacagt 666
|||||||||||||||||||||||||| |||||||| | ||||||| ||||| ||||
Sbjct: 148363 gcctgatggtatatttctgcccagaagagaacaagcagagtgtaggtggagaaaaacaac 148422
Query: 667 aagccggggagggtctagtaacaccaacttataaac 702
|||||||||| ||||||| | |||||||||||||||
Sbjct: 148423 aagccgggga-ggtctagcagcaccaacttataaac 148457
Score = 77.8 bits (39), Expect = 4e-11
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 160 cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 219
|||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 146437 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 146496
Query: 220 aac 222
|||
Sbjct: 146497 aac 146499
Score = 67.9 bits (34), Expect = 4e-08
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 562 acggctacgtatataatccttaacttatcggttgggagactcctagcctg 611
||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 148232 acggctatgtatataatccttaacttatctgttgggaggctcctggcctg 148281
Score = 52.0 bits (26), Expect = 0.003
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 298 accacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
||||| ||||| |||||||||||||| | |||||||||| ||||| ||||||||||
Sbjct: 146965 accactatgcaccttatcaggaaacaagcacagcagattgcagtcactgtcccaacct 147022
>dbj|AP005869.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:B1026C12
Length = 170240
Score = 111 bits (56), Expect = 3e-21
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 352 acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 147026 acctcataaagcttcttttttcgccccttagattcaatggggaaacgtctcagcaagaag 147085
Query: 412 aacagcct 419
||||||||
Sbjct: 147086 aacagcct 147093
Score = 109 bits (55), Expect = 1e-20
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 421 ccaccatatactgcgaaaccaagaagggccacagcggagacagatacgatgaagattttg 480
||||||||||||| || |||||||| |||||| |||||| ||| ||||||||||||
Sbjct: 147202 ccaccatatactgaaaagccaagaagagccacaaaagagacaactactatgaagattttg 147261
Query: 481 ctgaccagctcaaccaacggattgtcgtttattccaaggtacacccaaatacagacctg 539
||||||||||||||||| || |||||||| ||||| ||||| ||||||||||| |||||
Sbjct: 147262 ctgaccagctcaaccaatgggttgtcgttgattccgaggtatacccaaatacaaacctg 147320
Score = 93.7 bits (47), Expect = 8e-16
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 222 catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
|||||| ||||||||||| ||||||||||| ||||||||||||| ||| ||||||| |||
Sbjct: 145915 catatagtagaagaaatcaagaattggatggtccaaaacctccagagatacatcagaatc 145974
Query: 282 aaatgcagatattgccacc 300
|||||| ||||| ||||||
Sbjct: 145975 aaatgctgatatcgccacc 145993
Score = 87.7 bits (44), Expect = 5e-14
Identities = 84/96 (87%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 607 gcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaagaacagt 666
|||||||||||||||||||||||||| |||||||| | ||||||| ||||| ||||
Sbjct: 147662 gcctgatggtatatttctgcccagaagagaacaagcagagtgtaggtggagaaaaacaac 147721
Query: 667 aagccggggagggtctagtaacaccaacttataaac 702
|||||||||| ||||||| | |||||||||||||||
Sbjct: 147722 aagccgggga-ggtctagcagcaccaacttataaac 147756
Score = 77.8 bits (39), Expect = 4e-11
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 160 cgcttaggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctctgtc 219
|||||||| || |||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct: 145736 cgcttaggagggagcttccggaggatgaaaaggacaagagctgaaggcagtatctctgtc 145795
Query: 220 aac 222
|||
Sbjct: 145796 aac 145798
Score = 67.9 bits (34), Expect = 4e-08
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 562 acggctacgtatataatccttaacttatcggttgggagactcctagcctg 611
||||||| ||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 147531 acggctatgtatataatccttaacttatctgttgggaggctcctggcctg 147580
Score = 52.0 bits (26), Expect = 0.003
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 298 accacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
||||| ||||| |||||||||||||| | |||||||||| ||||| ||||||||||
Sbjct: 146264 accactatgcaccttatcaggaaacaagcacagcagattgcagtcactgtcccaacct 146321
>gb|AC016781.6 | Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete
sequence
Length = 151269
Score = 61.9 bits (31), Expect = 3e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 297 caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
|||||| ||||||||||||| |||||| ||| |||| |||| ||||||||||||||||
Sbjct: 147455 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 147513
Score = 58.0 bits (29), Expect = 4e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 222 catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
|||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 146772 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 146831
Query: 282 aaatg 286
|||||
Sbjct: 146832 aaatg 146836
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 608 cctgatggtatatttctgcccagaaaagaacaagta 643
||||||||||||||||||||||||| || |||||||
Sbjct: 148761 cctgatggtatatttctgcccagaacagcacaagta 148796
Score = 56.0 bits (28), Expect = 2e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 352 acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
|||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 147821 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 147880
Query: 412 aacagcct 419
|| |||||
Sbjct: 147881 aatagcct 147888
Score = 44.1 bits (22), Expect = 0.63
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 166 ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 215
||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 146643 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 146692
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 61.9 bits (31), Expect = 3e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 297 caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
|||||| ||||||||||||| |||||| ||| |||| |||| ||||||||||||||||
Sbjct: 20229369 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 20229427
Score = 58.0 bits (29), Expect = 4e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 222 catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
|||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 20228686 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 20228745
Query: 282 aaatg 286
|||||
Sbjct: 20228746 aaatg 20228750
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 608 cctgatggtatatttctgcccagaaaagaacaagta 643
||||||||||||||||||||||||| || |||||||
Sbjct: 20230675 cctgatggtatatttctgcccagaacagcacaagta 20230710
Score = 56.0 bits (28), Expect = 2e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 352 acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
|||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 20229735 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 20229794
Query: 412 aacagcct 419
|| |||||
Sbjct: 20229795 aatagcct 20229802
Score = 52.0 bits (26), Expect = 0.003
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 230 agaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaa 283
||||||| ||||| | |||||||||||||||||||| | | ||||||| |||||
Sbjct: 8365918 agaagaagtctaggactggatgatccaaaacctccagaaatacatcaggatcaa 8365971
Score = 44.1 bits (22), Expect = 0.63
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 166 ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 215
||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 20228557 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 20228606
>gb|AC084404.8 |AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete
sequence
Length = 156929
Score = 61.9 bits (31), Expect = 3e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 297 caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
|||||| ||||||||||||| |||||| ||| |||| |||| ||||||||||||||||
Sbjct: 24676 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 24734
Score = 58.0 bits (29), Expect = 4e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 222 catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
|||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 23993 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 24052
Query: 282 aaatg 286
|||||
Sbjct: 24053 aaatg 24057
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 608 cctgatggtatatttctgcccagaaaagaacaagta 643
||||||||||||||||||||||||| || |||||||
Sbjct: 25982 cctgatggtatatttctgcccagaacagcacaagta 26017
Score = 56.0 bits (28), Expect = 2e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 352 acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
|||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 25042 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 25101
Query: 412 aacagcct 419
|| |||||
Sbjct: 25102 aatagcct 25109
Score = 44.1 bits (22), Expect = 0.63
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 166 ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 215
||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 23864 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 23913
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 61.9 bits (31), Expect = 3e-06
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 297 caccacgatgcatcttatcaggaaacaggtgcagcagattgtcgtcacagtcccaacct 355
|||||| ||||||||||||| |||||| ||| |||| |||| ||||||||||||||||
Sbjct: 20222398 caccacaatgcatcttatcaagaaacatgtgaagcaaattgctgtcacagtcccaacct 20222456
Score = 58.0 bits (29), Expect = 4e-05
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 222 catataatagaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatc 281
|||||| || |||||||| || |||||||||||||||||||| | ||| | ||||| |||
Sbjct: 20221715 catatagtaaaagaaatccagtattggatgatccaaaacctcaagagatagatcaggatc 20221774
Query: 282 aaatg 286
|||||
Sbjct: 20221775 aaatg 20221779
Score = 56.0 bits (28), Expect = 2e-04
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 608 cctgatggtatatttctgcccagaaaagaacaagta 643
||||||||||||||||||||||||| || |||||||
Sbjct: 20223704 cctgatggtatatttctgcccagaacagcacaagta 20223739
Score = 56.0 bits (28), Expect = 2e-04
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 352 acctcataaagcttcttttttcgcccctttgattcaatggggaaacgtctcagcaagaca 411
|||||||| ||||||||| | || |||||||||||||| || ||||| ||||||| || |
Sbjct: 20222764 acctcatagagcttctttctgcggccctttgattcaatcggaaaacgcctcagcatgaaa 20222823
Query: 412 aacagcct 419
|| |||||
Sbjct: 20222824 aatagcct 20222831
Score = 52.0 bits (26), Expect = 0.003
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 230 agaagaaatctagaattggatgatccaaaacctccaaagaaacatcagcatcaa 283
||||||| ||||| | |||||||||||||||||||| | | ||||||| |||||
Sbjct: 8363753 agaagaagtctaggactggatgatccaaaacctccagaaatacatcaggatcaa 8363806
Score = 44.1 bits (22), Expect = 0.63
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 166 ggtggaagcttccgaaggatgaaaaggaccagcgcggaaggcagtatctc 215
||||||||||| || |||||||| ||||| || || || |||||||||||
Sbjct: 20221586 ggtggaagcttacggaggatgaataggacaagagcagagggcagtatctc 20221635
>emb|AL109917.22 |HSDJ140A9 Human DNA sequence from clone RP1-140A9 on chromosome 1p36.2-36.33
Contains the 5' end of the GNB1 gene for guanine
nucleotide binding protein (G protein) beta polypeptide 1,
a novel gene, the gene for calmodulin-like protein
(LOC163688), a novel gene (LOC339456), a novel gene
(LOC348524), a novel gene (LOC339458, FLJ37323) , a novel
gene ( LOC339459) similar to KIAA1751 and three CpG
islands, complete sequence
Length = 165191
Score = 40.1 bits (20), Expect = 9.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 230 agaagaaatctagaattgga 249
||||||||||||||||||||
Sbjct: 44050 agaagaaatctagaattgga 44031
>dbj|AB016925.1 | Arabidopsis thaliana TOM1 mRNA, complete cds
Length = 1369
Score = 40.1 bits (20), Expect = 9.8
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 604 ctagcctgatggtatatttctgcccagaaaagaacaagtaaggtgtaggccgagaa 659
|||||||| || ||||| ||||||||||| || ||||| | ||||| ||||||||
Sbjct: 541 ctagcctggtgatatatctctgcccagaacagcacaagcagcgtgtatgccgagaa 486
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,364,896
Number of Sequences: 3902068
Number of extensions: 6364896
Number of successful extensions: 123275
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122858
Number of HSP's gapped (non-prelim): 411
length of query: 714
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 691
effective length of database: 17,143,297,704
effective search space: 11846018713464
effective search space used: 11846018713464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)