ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26k21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 0.68
2dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 0.68
3gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 2.7
4emb|AL672121.10| Mouse DNA sequence from clone RP23-256H2 on chr... 40 2.7

>gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306,  section 292 of 469 of the
            complete genome
          Length = 10174

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 177  cggtggccttgctgtcggcgacggc 201
            |||||||||||||||||||| ||||
Sbjct: 5815 cggtggccttgctgtcggcggcggc 5791



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   ccgatttattcaaccgcagcg 141
             |||||||||||||||||||||
Sbjct: 56000 ccgatttattcaaccgcagcg 55980



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    atgagcaaccacggtggcct 185
              ||||||||||||||||||||
Sbjct: 618915 atgagcaaccacggtggcct 618934



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>emb|AL672121.10| Mouse DNA sequence from clone RP23-256H2 on chromosome 11, complete
             sequence
          Length = 36089

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    cctctctagtacaagctcat 48
             ||||||||||||||||||||
Sbjct: 17055 cctctctagtacaagctcat 17036


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,189,595
Number of Sequences: 3902068
Number of extensions: 1189595
Number of successful extensions: 70046
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69995
Number of HSP's gapped (non-prelim): 51
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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