ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26k10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box pro... 30 4.9
2A85B_MYCKA (P21160) Antigen 85-B precursor (85B) (Extracellular ... 30 4.9
3LEU3_STRT2 (Q5M405) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 30 6.5
4LEU3_STRT1 (Q5LZF3) 3-isopropylmalate dehydrogenase (EC 1.1.1.85... 30 6.5
5ESPL1_HUMAN (Q14674) Separin (EC 3.4.22.49) (Separase) (Caspase-... 30 8.4
6GLADA_MICEC (Q70KD4) Putative L-glutamine:3-amino-2,3-dideoxy-sc... 30 8.4

>TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box protein 18)|
          Length = 607

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = -3

Query: 484 GFTRKHSILLDRDSSSQ---HIATWTSKALSTALVSS*GCKRKAQQVLPWTTSLLQGQGR 314
           G    H  LL   S S    H+   TS+  S A      C R    +  ++TSL +   R
Sbjct: 381 GVPATHPHLLSGSSCSSPAFHLGPNTSQLCSLAPADYSACARSGLTLNRYSTSLAETYNR 440

Query: 313 RVSLSASTRA--ATPSLVGRRLATAISLQFPG 224
             + +  T A   TPS VG   +T++++   G
Sbjct: 441 LTNQAGETFAPPRTPSYVGVSSSTSVNMSMGG 472



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>A85B_MYCKA (P21160) Antigen 85-B precursor (85B) (Extracellular alpha-antigen)|
           (Antigen 85 complex B) (Ag85B) (Mycolyl transferase 85B)
           (EC 2.3.1.-) (Fibronectin-binding protein B)
          Length = 325

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 331 LQGQGRRVSLSASTRAATPSLVGRR--LATAISLQFPGLRLWLMIASSSSMGYCI 173
           ++  GRR+ + A+  AA P LVG     ATA +   PGL +  +   S++MG  I
Sbjct: 8   IRAWGRRLLVGAAAAAALPGLVGLAGGAATAGAFSRPGLPVEYLQVPSAAMGRSI 62



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>LEU3_STRT2 (Q5M405) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 345

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -3

Query: 334 LLQGQGRRVSLSASTRAATPSLVGRRLATAISLQFPGLRLWLMIASSSSM 185
           + QG+G++V+          S + R++A  +SL+FP + L   +  S++M
Sbjct: 171 IAQGRGKKVTSIDKQNVLATSKLWRKVADEVSLEFPDVTLEHQLVDSAAM 220



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>LEU3_STRT1 (Q5LZF3) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 345

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -3

Query: 334 LLQGQGRRVSLSASTRAATPSLVGRRLATAISLQFPGLRLWLMIASSSSM 185
           + QG+G++V+          S + R++A  +SL+FP + L   +  S++M
Sbjct: 171 IAQGRGKKVTSIDKQNVLATSKLWRKVADEVSLEFPDVTLEHQLVDSAAM 220



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>ESPL1_HUMAN (Q14674) Separin (EC 3.4.22.49) (Separase) (Caspase-like protein|
            ESPL1) (Extra spindle poles-like 1 protein)
          Length = 2120

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 486  ADLLASIPSCWTGILPLSTLQHGPAKRFPLLWSLLRD 376
            A L  S+  CW G+L  S+ + GPA+    L  LL+D
Sbjct: 1792 ASLEKSVLGCWKGLLLPSSEEPGPAQEASRLQELLQD 1828



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>GLADA_MICEC (Q70KD4) Putative L-glutamine:3-amino-2,3-dideoxy-scyllo-inosose|
           aminotransferase (EC 2.6.1.-) (Putative
           L-glutamine:amino-DOI aminotransferase) (Putative
           gentamicin aminotransferase II)
          Length = 418

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 508 VADYSHLGGFTRKHSILLDRDSSSQHIATWTSKALST 398
           VAD   L    R+H++LL  D +  H A W  + + T
Sbjct: 150 VADMDALLDICRRHNLLLIEDCAHAHFAEWRGRCVGT 186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,417,698
Number of Sequences: 219361
Number of extensions: 2133108
Number of successful extensions: 5447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5447
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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