ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26k05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009249.1| Triticum aestivum clone wlk1.pk0028.e1:fis, full ... 76 2e-10
2gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete seq... 52 0.002
3gb|AF343492.1| Aegilops speltoides subsp. speltoides clone pla2 ... 46 0.14
4gb|AF343491.1| Aegilops speltoides subsp. speltoides clone pla1 ... 46 0.14
5gb|AF343490.1| Aegilops speltoides subsp. ligustica clone pla 3-... 46 0.14
6gb|AF343488.1| Triticum timopheevii subsp. armeniacum clone pla1... 46 0.14
7emb|AL035594.7|HS67A5 Human DNA sequence from clone RP1-67A5 on ... 44 0.55
8gb|AC092445.4| Homo sapiens BAC clone RP11-676H8 from 4, complet... 44 0.55
9emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 i... 44 0.55
10gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene lo... 42 2.2
11emb|AL691476.12| Mouse DNA sequence from clone RP23-219D8 on chr... 42 2.2
12gb|DQ247823.1| Aegilops searsii voucher H6605 disrupted meiotic ... 42 2.2
13dbj|AK138828.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 42 2.2
14gb|AC092188.1|AC092188 Drosophila melanogaster, chromosome 2L, r... 42 2.2
15gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 ge... 42 2.2
16gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 ... 42 2.2
17gb|AC004121.1|AC004121 Drosophila melanogaster (P1 DS05342 (D92)... 42 2.2
18gb|AC161414.3| Mus musculus chromosome 1, clone CH36-500J15, com... 42 2.2
19gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, gen... 40 8.6
20gb|AE013113.1| Thermoanaerobacter tengcongensis MB4, section 140... 40 8.6
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.6
22gb|AC164575.7| Mus musculus 10 BAC RP23-455M6 (Roswell Park Canc... 40 8.6
23ref|XM_824720.1| Trypanosoma brucei TREU927 Gp63-1 surface prote... 40 8.6
24gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosom... 40 8.6
25gb|AC115805.12| Mus musculus chromosome 10, clone RP23-412P24, c... 40 8.6
26gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 8.6
27emb|AL445216.6| Human DNA sequence from clone RP11-204N9 on chro... 40 8.6
28emb|AL390036.17| Human DNA sequence from clone RP11-356N1 on chr... 40 8.6
29emb|AL356133.17| Human DNA sequence from clone RP11-337A23 on ch... 40 8.6
30emb|AL080285.6|HSJ344J20 Human DNA sequence from clone RP3-344J2... 40 8.6
31gb|AC016255.24| Homo sapiens 3 BAC RP11-883M5 (Roswell Park Canc... 40 8.6
32gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 40 8.6
33emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4,... 40 8.6
34gb|DQ023266.1| Pan troglodytes HSD17B1P pseudogene, complete seq... 40 8.6
35gb|AC093453.40| Canis familiaris strain Doberman Pinscher clone ... 40 8.6
36gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete ... 40 8.6
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
39dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
40gb|AC067852.23| Homo sapiens chromosome 17, clone RP11-400F19, c... 40 8.6
41dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
42gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 8.6
43emb|BX649384.6| Zebrafish DNA sequence from clone CH211-199G17 i... 40 8.6
44gb|AC134428.3| Mus musculus BAC clone RP24-330C24 from 10, compl... 40 8.6
45gb|AC123548.4| Mus musculus BAC clone RP23-441J16 from 6, comple... 40 8.6
46dbj|AP004915.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.6 
>gb|BT009249.1| Triticum aestivum clone wlk1.pk0028.e1:fis, full insert mRNA sequence
          Length = 2310

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                          
Query: 410  ccttaacttattatatgtttctacatttgccacaaagctacatcat 455
            ||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 2192 ccttaacttattatatgtttctacattggccacaaagccacatcat 2147
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>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence
          Length = 101101

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 512   aatataaaagcatttgaacactagtgtagtgtcaaaaacgtt 553
             ||||||| | |||||  |||||||||||||||||||||||||
Sbjct: 77281 aatataagaacattttgacactagtgtagtgtcaaaaacgtt 77240
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>gb|AF343492.1| Aegilops speltoides subsp. speltoides clone pla2 3-phosphoglycerate
            kinase (Pgk-1) gene, partial cds; nuclear gene for
            plastid product
          Length = 1457

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 529  acactagtgtagtgtcaaaaacg 551
            |||||||||||||||||||||||
Sbjct: 1259 acactagtgtagtgtcaaaaacg 1237
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>gb|AF343491.1| Aegilops speltoides subsp. speltoides clone pla1 3-phosphoglycerate
            kinase (Pgk-1) gene, partial cds; nuclear gene for
            plastid product
          Length = 1446

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 529  acactagtgtagtgtcaaaaacg 551
            |||||||||||||||||||||||
Sbjct: 1253 acactagtgtagtgtcaaaaacg 1231
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>gb|AF343490.1| Aegilops speltoides subsp. ligustica clone pla 3-phosphoglycerate
            kinase (Pgk-1) gene, partial cds; nuclear gene for
            plastid product
          Length = 1427

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 529  acactagtgtagtgtcaaaaacg 551
            |||||||||||||||||||||||
Sbjct: 1229 acactagtgtagtgtcaaaaacg 1207
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>gb|AF343488.1| Triticum timopheevii subsp. armeniacum clone pla1 3-phosphoglycerate
            kinase (Pgk-1) gene, partial cds; nuclear gene for
            plastid product
          Length = 1454

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 529  acactagtgtagtgtcaaaaacg 551
            |||||||||||||||||||||||
Sbjct: 1255 acactagtgtagtgtcaaaaacg 1233
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>emb|AL035594.7|HS67A5 Human DNA sequence from clone RP1-67A5 on chromosome 6q22.31-22.33
             Contains part of the PTPRK gene for protein tyrosine
             phosphatase, receptor type K (R-PTP-KAPPA), complete
             sequence
          Length = 105100

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 506   tttcataatataaaagcatttg 527
             ||||||||||||||||||||||
Sbjct: 52307 tttcataatataaaagcatttg 52286
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>gb|AC092445.4| Homo sapiens BAC clone RP11-676H8 from 4, complete sequence
          Length = 173840

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 2     cttaaaaatataaaaaatgcaa 23
             ||||||||||||||||||||||
Sbjct: 81886 cttaaaaatataaaaaatgcaa 81907
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>emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 in linkage group 6,
             complete sequence
          Length = 177161

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 3     ttaaaaatataaaaaatgcaat 24
             ||||||||||||||||||||||
Sbjct: 95561 ttaaaaatataaaaaatgcaat 95540
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>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence
          Length = 307015

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 529   acactagtgtagtgtcaaaaa 549
             |||||||||||||||||||||
Sbjct: 19858 acactagtgtagtgtcaaaaa 19838
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>emb|AL691476.12| Mouse DNA sequence from clone RP23-219D8 on chromosome 11 Contains a
              chaperonin subunit 3 (gamma) (Cct3) pseudogene and the 3'
              end of a novel gene, complete sequence
          Length = 177256

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 500    ccttggtttcataatataaaa 520
              |||||||||||||||||||||
Sbjct: 131383 ccttggtttcataatataaaa 131363
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>gb|DQ247823.1| Aegilops searsii voucher H6605 disrupted meiotic cDNA 1 (DMC1)
           gene, partial cds; and Stowaway miniature
           inverted-repeat transposable element, complete sequence
          Length = 1092

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 529 acactagtgtagtgtcaaaaa 549
           |||||||||||||||||||||
Sbjct: 856 acactagtgtagtgtcaaaaa 836
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>dbj|AK138828.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length
          enriched library, clone:A430087N04 product:hypothetical
          protein, full insert sequence
          Length = 3675

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ccttaaaaatataaaaaatgcaatt 25
          ||||||||||||||||| |||||||
Sbjct: 4  ccttaaaaatataaaaactgcaatt 28
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>gb|AC092188.1|AC092188 Drosophila melanogaster, chromosome 2L, region 22B-22C, BAC clone
              BACR28O09, complete sequence
          Length = 177326

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 348    ttgtcaaccgaacgcacattttatg 372
              ||||||||| |||||||||||||||
Sbjct: 128724 ttgtcaaccaaacgcacattttatg 128748
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>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence
          Length = 215241

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 529   acactagtgtagtgtcaaaaa 549
             |||||||||||||||||||||
Sbjct: 39653 acactagtgtagtgtcaaaaa 39633
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>gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 of 83 of the complete
              sequence
          Length = 306696

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 348    ttgtcaaccgaacgcacattttatg 372
              ||||||||| |||||||||||||||
Sbjct: 281997 ttgtcaaccaaacgcacattttatg 281973
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>gb|AC004121.1|AC004121 Drosophila melanogaster (P1 DS05342 (D92)) DNA sequence, complete
            sequence
          Length = 18443

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 348  ttgtcaaccgaacgcacattttatg 372
            ||||||||| |||||||||||||||
Sbjct: 9712 ttgtcaaccaaacgcacattttatg 9688
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>gb|AC161414.3| Mus musculus chromosome 1, clone CH36-500J15, complete sequence
          Length = 165234

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1     ccttaaaaatataaaaaatgcaatt 25
             ||||||||||||||||| |||||||
Sbjct: 59590 ccttaaaaatataaaaactgcaatt 59614
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>gb|AF402959.1| Oryza sativa chromosome 4 clones V17 and 214, genomic sequence
          Length = 64224

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 562  tcttatattataaaacggat 581
            ||||||||||||||||||||
Sbjct: 9064 tcttatattataaaacggat 9083
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>gb|AE013113.1| Thermoanaerobacter tengcongensis MB4, section 140 of 244 of the
             complete genome
          Length = 13544

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     ttaaaaatataaaaaatgcaattg 26
             ||||||||||||||||| ||||||
Sbjct: 11550 ttaaaaatataaaaaatccaattg 11527
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 561      ttcttatattataaaacgga 580
                ||||||||||||||||||||
Sbjct: 31364113 ttcttatattataaaacgga 31364094
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>gb|AC164575.7| Mus musculus 10 BAC RP23-455M6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 196723

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ttaagaaaatgcaatcagat 59
              ||||||||||||||||||||
Sbjct: 104772 ttaagaaaatgcaatcagat 104753
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>ref|XM_824720.1| Trypanosoma brucei TREU927 Gp63-1 surface protease (Tb11_0370)
            partial mRNA
          Length = 1764

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    aaaaatataaaaaatgcaat 24
            ||||||||||||||||||||
Sbjct: 1375 aaaaatataaaaaatgcaat 1394
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>gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosome 17, complete
             sequence
          Length = 174143

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ccttaaaaatataaaaaatg 20
             ||||||||||||||||||||
Sbjct: 15558 ccttaaaaatataaaaaatg 15539
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>gb|AC115805.12| Mus musculus chromosome 10, clone RP23-412P24, complete sequence
          Length = 193434

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 501    cttggtttcataatataaaagcat 524
              |||||||||||| |||||||||||
Sbjct: 100641 cttggtttcatattataaaagcat 100664
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 97      cgtcgtggtgaacggcctcg 116
               ||||||||||||||||||||
Sbjct: 2238011 cgtcgtggtgaacggcctcg 2237992
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>emb|AL445216.6| Human DNA sequence from clone RP11-204N9 on chromosome 13 Contains the
             3' end of the PCDH17 gene for protocadherin 17 (PCH68
             PCDH68), complete sequence
          Length = 99292

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    atacaaaattaagaaaatgc 51
             ||||||||||||||||||||
Sbjct: 73066 atacaaaattaagaaaatgc 73047
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>emb|AL390036.17| Human DNA sequence from clone RP11-356N1 on chromosome 1 Contains the
            3' end of a novel gene, a novel gene, the 3' end of the
            SLC25A24 gene for solute carrier family 25 (mitochondrial
            carrier; phosphate carrier) member 24 and two CpG
            islands, complete sequence
          Length = 183037

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    ccttaaaaatataaaaaatgcaat 24
            ||||||||||| ||||||||||||
Sbjct: 8751 ccttaaaaataaaaaaaatgcaat 8774
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>emb|AL356133.17| Human DNA sequence from clone RP11-337A23 on chromosome 9 Contains a
             novel gene (FLJ13657), the PLAA gene for phospholipase
             A2-activating protein (PLAP), a novel gene, the 5' end of
             capillary morphogenesis protein 1 (CMG-1, FLJ22621)(CMG1)
             and 3 CpG islands, complete sequence
          Length = 187805

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaaatataaaaaatgcaatt 25
             ||||||||||||||||||||
Sbjct: 53069 aaaatataaaaaatgcaatt 53050
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>emb|AL080285.6|HSJ344J20 Human DNA sequence from clone RP3-344J20 on chromosome 6q16.1-16.3
              Contains an arginase, type II (ARG2) pseudogene and a
              peroxiredoxin 2 (thiol-specific antioxidant 1, natural
              killer-enhancing factor B, thioredoxin-dependent peroxide
              reductase 1, thiol-specific antioxidant 1, natural
              killer-enhancing factor)(PRDX2)(PRP, TSA, NKEFB, TDPX1)
              pseudogene, complete sequence
          Length = 170803

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 584    ggagtacttattttgcaaca 603
              ||||||||||||||||||||
Sbjct: 112776 ggagtacttattttgcaaca 112757
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>gb|AC016255.24| Homo sapiens 3 BAC RP11-883M5 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 84112

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 499  cccttggtttcataatataa 518
            ||||||||||||||||||||
Sbjct: 6974 cccttggtttcataatataa 6955
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
              sequence
          Length = 159091

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 561    ttcttatattataaaacgga 580
              ||||||||||||||||||||
Sbjct: 131687 ttcttatattataaaacgga 131706
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>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03,
             complete sequence
          Length = 140948

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 587   gtacttattttgcaacacta 606
             ||||||||||||||||||||
Sbjct: 83658 gtacttattttgcaacacta 83639
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>gb|DQ023266.1| Pan troglodytes HSD17B1P pseudogene, complete sequence; and
              17beta-hydroxysteroid dehydrogenase type 1 (HSD17B1) gene,
              complete cds
          Length = 200028

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      taaaaatataaaaaatgcaa 23
              ||||||||||||||||||||
Sbjct: 130614 taaaaatataaaaaatgcaa 130595
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>gb|AC093453.40| Canis familiaris strain Doberman Pinscher clone rp81-252i15, complete
              sequence
          Length = 140024

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     caaaattaagaaaatgcaat 54
              ||||||||||||||||||||
Sbjct: 119410 caaaattaagaaaatgcaat 119429
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>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
          Length = 102433

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 509   cataatataaaagcatttga-acactagtgtagtgtcaaaaacg 551
             |||||||||| |||||||   ||| |||||||||||||||||||
Sbjct: 69951 cataatataagagcatttttgacattagtgtagtgtcaaaaacg 69908
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 587     gtacttattttgcaacacta 606
               ||||||||||||||||||||
Sbjct: 1003939 gtacttattttgcaacacta 1003920
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 561      ttcttatattataaaacgga 580
                ||||||||||||||||||||
Sbjct: 31454629 ttcttatattataaaacgga 31454610
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 2        cttaaaaatataaaaaatgcaatt 25
                ||||||||||| ||||||||||||
Sbjct: 24505467 cttaaaaatattaaaaatgcaatt 24505490
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>gb|AC067852.23| Homo sapiens chromosome 17, clone RP11-400F19, complete sequence
          Length = 179146

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     taaaaatataaaaaatgcaa 23
             ||||||||||||||||||||
Sbjct: 39787 taaaaatataaaaaatgcaa 39806
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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0686E09
          Length = 156425

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     cttaaaaatataaaaaatgcaatt 25
             ||||||||||| ||||||||||||
Sbjct: 85851 cttaaaaatattaaaaatgcaatt 85874
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 4       taaaaatataaaaaatgcaattgg 27
               |||||| |||||||||||||||||
Sbjct: 1881256 taaaaaaataaaaaatgcaattgg 1881279
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>emb|BX649384.6| Zebrafish DNA sequence from clone CH211-199G17 in linkage group 19,
             complete sequence
          Length = 190998

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     ttaaaaatataaaaaatgca 22
             ||||||||||||||||||||
Sbjct: 13041 ttaaaaatataaaaaatgca 13060
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>gb|AC134428.3| Mus musculus BAC clone RP24-330C24 from 10, complete sequence
          Length = 148006

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ttaagaaaatgcaatcagat 59
              ||||||||||||||||||||
Sbjct: 131866 ttaagaaaatgcaatcagat 131847
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>gb|AC123548.4| Mus musculus BAC clone RP23-441J16 from 6, complete sequence
          Length = 178488

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ccttaaaaatataaaaaatg 20
             ||||||||||||||||||||
Sbjct: 95499 ccttaaaaatataaaaaatg 95518
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>dbj|AP004915.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT16G15, TM0073,
            complete sequence
          Length = 90077

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   aaattaagaaaatgcaatca 56
            ||||||||||||||||||||
Sbjct: 8063 aaattaagaaaatgcaatca 8082


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,977,778
Number of Sequences: 3902068
Number of extensions: 5977778
Number of successful extensions: 175274
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174853
Number of HSP's gapped (non-prelim): 422
length of query: 629
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 606
effective length of database: 17,143,297,704
effective search space: 10388838408624
effective search space used: 10388838408624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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