ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190836.1| Oryza sativa (japonica cultivar-group), predic... 135 2e-28
2dbj|AK101857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
4dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
5gb|AY110805.1| Zea mays CL31502_1 mRNA sequence 68 4e-08
6gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 42 2.2
7gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c... 42 2.2
8emb|AL731735.14| Mouse DNA sequence from clone RP23-139P21 on ch... 42 2.2
9ref|XM_476313.1| Oryza sativa (japonica cultivar-group), predic... 40 8.7
10ref|XM_628961.1| Dictyostelium discoideum putative protein kinas... 40 8.7
11gb|AC016792.5| Drosophila melanogaster clone BACR26A02, complete... 40 8.7
12gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com... 40 8.7
13gb|AC147365.4| Medicago truncatula clone mth2-10f9, complete seq... 40 8.7
14emb|AL831732.18| Human DNA sequence from clone RP11-396L10 on ch... 40 8.7
15emb|Z50152.1|DMTRXIII D.melanogaster DNA for trxI and trxII genes 40 8.7
16gb|AC092709.2| Homo sapiens chromosome 8, clone RP11-509P12, com... 40 8.7
17ref|NM_142095.2| Drosophila melanogaster CG12207-RB, transcript ... 40 8.7
18gb|AC090569.4| Homo sapiens chromosome 17, clone RP11-269M11, co... 40 8.7
19gb|AC027043.7| Homo sapiens chromosome 8, clone RP11-769H18, com... 40 8.7
20gb|AC084257.2| Homo sapiens chromosome 8, clone RP1-164F9, compl... 40 8.7
21dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
22gb|AC087433.4|AC087433 Homo sapiens chromosome 15 clone RP11-101... 40 8.7
23gb|AC007904.6|AC007904 Drosophila melanogaster, chromosome 3R, r... 40 8.7
24gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosom... 40 8.7
25gb|AC079154.5| Homo sapiens BAC clone RP11-314E14 from 2, comple... 40 8.7
26gb|AC018880.6| Homo sapiens BAC clone RP11-336P15 from 2, comple... 40 8.7
27dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
28dbj|AB046473.2| Eurypharynx pelecanoides mitochondrial DNA, comp... 40 8.7
29dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.7
30gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42... 40 8.7
31gb|U23446.1|DMU23446 Drosophila melanogaster trithorax gene, reg... 40 8.7
32dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds 40 8.7
33dbj|D16387.1| Asterina pectinifera mitochondrial DNA, complete g... 40 8.7
34dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase,... 40 8.7 
>ref|NM_190836.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2862

 Score =  135 bits (68), Expect = 2e-28
 Identities = 157/187 (83%)
 Strand = Plus / Minus

                                                                        
Query: 450  ctatcttctactaaatattgaccgacactgttatcatcggaactatttgggacttcagac 509
            ||||||||||||||| ||||||| | ||  |||||||| |  ||| ||||| ||||||||
Sbjct: 2717 ctatcttctactaaacattgaccaaaaccattatcatcagtgctaattgggccttcagac 2658

                                                                        
Query: 510  atgcaatccaaagaactacaactgcttctggaagagagtctaccatctgctgaaaatcca 569
            ||||| |||||||| ||| ||||||||||| | ||||||||||| ||  |||||||||| 
Sbjct: 2657 atgcagtccaaagagctagaactgcttctgcaggagagtctaccgtcctctgaaaatccg 2598

                                                                        
Query: 570  gacttatgtcgctgcagaaacccacttctgttactatcangtgtgttcacccttgtctgt 629
            ||||| || ||||| || || |||  | ||||||||||| ||||| ||||||||| ||||
Sbjct: 2597 gacttttgacgctgaagcaatccatatttgttactatcaggtgtgctcacccttgactgt 2538

                   
Query: 630  tgaaacc 636
            |||||||
Sbjct: 2537 tgaaacc 2531



 Score =  107 bits (54), Expect = 4e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                        
Query: 309  gggagtagctcactatcttcacaatcgtctttgctatttacaactccgagctgggcctcc 368
            |||||| |||| || ||||||||||| |||||| ||||||||| ||||||||||||||| 
Sbjct: 2852 gggagttgctctctgtcttcacaatcctctttgttatttacaaatccgagctgggcctct 2793

                                              
Query: 369  gtgttcaggctctcagtgttatttacaagctcgg 402
            ||||| ||||||| ||| ||||||||||||||||
Sbjct: 2792 gtgttaaggctctgagtattatttacaagctcgg 2759
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>dbj|AK101857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069O17, full
            insert sequence
          Length = 3412

 Score =  135 bits (68), Expect = 2e-28
 Identities = 157/187 (83%)
 Strand = Plus / Minus

                                                                        
Query: 450  ctatcttctactaaatattgaccgacactgttatcatcggaactatttgggacttcagac 509
            ||||||||||||||| ||||||| | ||  |||||||| |  ||| ||||| ||||||||
Sbjct: 2966 ctatcttctactaaacattgaccaaaaccattatcatcagtgctaattgggccttcagac 2907

                                                                        
Query: 510  atgcaatccaaagaactacaactgcttctggaagagagtctaccatctgctgaaaatcca 569
            ||||| |||||||| ||| ||||||||||| | ||||||||||| ||  |||||||||| 
Sbjct: 2906 atgcagtccaaagagctagaactgcttctgcaggagagtctaccgtcctctgaaaatccg 2847

                                                                        
Query: 570  gacttatgtcgctgcagaaacccacttctgttactatcangtgtgttcacccttgtctgt 629
            ||||| || ||||| || || |||  | ||||||||||| ||||| ||||||||| ||||
Sbjct: 2846 gacttttgacgctgaagcaatccatatttgttactatcaggtgtgctcacccttgactgt 2787

                   
Query: 630  tgaaacc 636
            |||||||
Sbjct: 2786 tgaaacc 2780



 Score =  113 bits (57), Expect = 7e-22
 Identities = 214/260 (82%), Gaps = 11/260 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    attgaaaatggaattaacaatcctcgttatgtacaagttctt--gtaagattgaaacccc 58
            |||||||||| ||| ||||||| | ||||||| || ||||||  ||||||| ||||||| 
Sbjct: 3394 attgaaaatgcaatgaacaatctt-gttatgtgcacgttcttttgtaagatggaaaccc- 3337

                                                                        
Query: 59   aacttcacatcactagggcttccatacacgcagggccataattcgacctccctttcatcc 118
            ||||||||| ||| |  ||| |||||| |   ||||| |||||||||||||| |||||  
Sbjct: 3336 aacttcacagcaccaccgctcccatacccattgggccttaattcgacctccccttcattt 3277

                                                                        
Query: 119  tttcctcagtaaacttatcatgaatgcttataaatagtggagtactagagaagagaggcc 178
            |||  |||||||| ||||||||||||||||||||||| |     ||| |||||||||| |
Sbjct: 3276 ttttatcagtaaatttatcatgaatgcttataaatagag-----ctatagaagagaggtc 3222

                                                                        
Query: 179  aagaactccggatggagaaatgaaagaattaacagttacacacgcacgggaaagacttgg 238
            ||||||||| |  ||||||||||||||| || ||| |||||||||||    ||||||| |
Sbjct: 3221 aagaactccaggaggagaaatgaaagaa-tagcagctacacacgcacaatgaagactt-g 3164

                                
Query: 239  cgattcaaggagctcctcca 258
            ||||||||| ||||||||||
Sbjct: 3163 cgattcaagaagctcctcca 3144



 Score =  107 bits (54), Expect = 4e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                        
Query: 309  gggagtagctcactatcttcacaatcgtctttgctatttacaactccgagctgggcctcc 368
            |||||| |||| || ||||||||||| |||||| ||||||||| ||||||||||||||| 
Sbjct: 3101 gggagttgctctctgtcttcacaatcctctttgttatttacaaatccgagctgggcctct 3042

                                              
Query: 369  gtgttcaggctctcagtgttatttacaagctcgg 402
            ||||| ||||||| ||| ||||||||||||||||
Sbjct: 3041 gtgttaaggctctgagtattatttacaagctcgg 3008
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  115 bits (58), Expect = 2e-22
 Identities = 144/173 (83%)
 Strand = Plus / Plus

                                                                            
Query: 450      ctatcttctactaaatattgaccgacactgttatcatcggaactatttgggacttcagac 509
                ||||||||||||||| ||||||| | ||  |||||||| |  ||| ||||| ||||||||
Sbjct: 33362955 ctatcttctactaaacattgaccaaaaccattatcatcagtgctaattgggccttcagac 33363014

                                                                            
Query: 510      atgcaatccaaagaactacaactgcttctggaagagagtctaccatctgctgaaaatcca 569
                ||||| |||||||| ||| ||||||||||| | ||||||||||| ||  |||||||||| 
Sbjct: 33363015 atgcagtccaaagagctagaactgcttctgcaggagagtctaccgtcctctgaaaatccg 33363074

                                                                     
Query: 570      gacttatgtcgctgcagaaacccacttctgttactatcangtgtgttcaccct 622
                ||||| || ||||| || || |||  | ||||||||||| ||||| |||||||
Sbjct: 33363075 gacttttgacgctgaagcaatccatatttgttactatcaggtgtgctcaccct 33363127



 Score =  113 bits (57), Expect = 7e-22
 Identities = 214/260 (82%), Gaps = 11/260 (4%)
 Strand = Plus / Plus

                                                                            
Query: 1        attgaaaatggaattaacaatcctcgttatgtacaagttctt--gtaagattgaaacccc 58
                |||||||||| ||| ||||||| | ||||||| || ||||||  ||||||| ||||||| 
Sbjct: 33362261 attgaaaatgcaatgaacaatctt-gttatgtgcacgttcttttgtaagatggaaaccc- 33362318

                                                                            
Query: 59       aacttcacatcactagggcttccatacacgcagggccataattcgacctccctttcatcc 118
                ||||||||| ||| |  ||| |||||| |   ||||| |||||||||||||| |||||  
Sbjct: 33362319 aacttcacagcaccaccgctcccatacccattgggccttaattcgacctccccttcattt 33362378

                                                                            
Query: 119      tttcctcagtaaacttatcatgaatgcttataaatagtggagtactagagaagagaggcc 178
                |||  |||||||| ||||||||||||||||||||||| |     ||| |||||||||| |
Sbjct: 33362379 ttttatcagtaaatttatcatgaatgcttataaatagag-----ctatagaagagaggtc 33362433

                                                                            
Query: 179      aagaactccggatggagaaatgaaagaattaacagttacacacgcacgggaaagacttgg 238
                ||||||||| |  ||||||||||||||| || ||| |||||||||||    ||||||| |
Sbjct: 33362434 aagaactccaggaggagaaatgaaagaa-tagcagctacacacgcacaatgaagactt-g 33362491

                                    
Query: 239      cgattcaaggagctcctcca 258
                ||||||||| ||||||||||
Sbjct: 33362492 cgattcaagaagctcctcca 33362511



 Score =  107 bits (54), Expect = 4e-20
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                            
Query: 309      gggagtagctcactatcttcacaatcgtctttgctatttacaactccgagctgggcctcc 368
                |||||| |||| || ||||||||||| |||||| ||||||||| ||||||||||||||| 
Sbjct: 33362820 gggagttgctctctgtcttcacaatcctctttgttatttacaaatccgagctgggcctct 33362879

                                                  
Query: 369      gtgttcaggctctcagtgttatttacaagctcgg 402
                ||||| ||||||| ||| ||||||||||||||||
Sbjct: 33362880 gtgttaaggctctgagtattatttacaagctcgg 33362913
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>dbj|AP003345.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0415A04
          Length = 160669

 Score =  115 bits (58), Expect = 2e-22
 Identities = 144/173 (83%)
 Strand = Plus / Plus

                                                                         
Query: 450   ctatcttctactaaatattgaccgacactgttatcatcggaactatttgggacttcagac 509
             ||||||||||||||| ||||||| | ||  |||||||| |  ||| ||||| ||||||||
Sbjct: 39121 ctatcttctactaaacattgaccaaaaccattatcatcagtgctaattgggccttcagac 39180

                                                                         
Query: 510   atgcaatccaaagaactacaactgcttctggaagagagtctaccatctgctgaaaatcca 569
             ||||| |||||||| ||| ||||||||||| | ||||||||||| ||  |||||||||| 
Sbjct: 39181 atgcagtccaaagagctagaactgcttctgcaggagagtctaccgtcctctgaaaatccg 39240

                                                                  
Query: 570   gacttatgtcgctgcagaaacccacttctgttactatcangtgtgttcaccct 622
             ||||| || ||||| || || |||  | ||||||||||| ||||| |||||||
Sbjct: 39241 gacttttgacgctgaagcaatccatatttgttactatcaggtgtgctcaccct 39293



 Score =  113 bits (57), Expect = 7e-22
 Identities = 214/260 (82%), Gaps = 11/260 (4%)
 Strand = Plus / Plus

                                                                         
Query: 1     attgaaaatggaattaacaatcctcgttatgtacaagttctt--gtaagattgaaacccc 58
             |||||||||| ||| ||||||| | ||||||| || ||||||  ||||||| ||||||| 
Sbjct: 38427 attgaaaatgcaatgaacaatctt-gttatgtgcacgttcttttgtaagatggaaaccc- 38484

                                                                         
Query: 59    aacttcacatcactagggcttccatacacgcagggccataattcgacctccctttcatcc 118
             ||||||||| ||| |  ||| |||||| |   ||||| |||||||||||||| |||||  
Sbjct: 38485 aacttcacagcaccaccgctcccatacccattgggccttaattcgacctccccttcattt 38544

                                                                         
Query: 119   tttcctcagtaaacttatcatgaatgcttataaatagtggagtactagagaagagaggcc 178
             |||  |||||||| ||||||||||||||||||||||| |     ||| |||||||||| |
Sbjct: 38545 ttttatcagtaaatttatcatgaatgcttataaatagag-----ctatagaagagaggtc 38599

                                                                         
Query: 179   aagaactccggatggagaaatgaaagaattaacagttacacacgcacgggaaagacttgg 238
             ||||||||| |  ||||||||||||||| || ||| |||||||||||    ||||||| |
Sbjct: 38600 aagaactccaggaggagaaatgaaagaa-tagcagctacacacgcacaatgaagactt-g 38657

                                 
Query: 239   cgattcaaggagctcctcca 258
             ||||||||| ||||||||||
Sbjct: 38658 cgattcaagaagctcctcca 38677



 Score =  107 bits (54), Expect = 4e-20
 Identities = 84/94 (89%)
 Strand = Plus / Plus

                                                                         
Query: 309   gggagtagctcactatcttcacaatcgtctttgctatttacaactccgagctgggcctcc 368
             |||||| |||| || ||||||||||| |||||| ||||||||| ||||||||||||||| 
Sbjct: 38986 gggagttgctctctgtcttcacaatcctctttgttatttacaaatccgagctgggcctct 39045

                                               
Query: 369   gtgttcaggctctcagtgttatttacaagctcgg 402
             ||||| ||||||| ||| ||||||||||||||||
Sbjct: 39046 gtgttaaggctctgagtattatttacaagctcgg 39079
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>gb|AY110805.1| Zea mays CL31502_1 mRNA sequence
          Length = 923

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 342 ctatttacaactccgagctgggcctccgtgttcaggctctcagtgttatttacaagctcg 401
           |||||||||| ||||||||||||||| |  || |||||| |||| |||||||||||||||
Sbjct: 290 ctatttacaaatccgagctgggcctctgacttgaggctcccagtattatttacaagctcg 349

             
Query: 402 gc 403
           ||
Sbjct: 350 gc 351



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/38 (92%), Gaps = 2/38 (5%)
 Strand = Plus / Plus

                                                 
Query: 188 ggatggagaaatgaaagaattaacagttacacacgcac 225
           |||||||||||||||||||||  ||| |||||||||||
Sbjct: 147 ggatggagaaatgaaagaatt--cagctacacacgcac 182



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 547 gtctaccatctgctgaaaatccagacttatgtcgctgcag 586
           ||||||||||| ||||||  ||||| || |||||||||||
Sbjct: 489 gtctaccatcttctgaaatcccagatttctgtcgctgcag 528
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    acctccctttcatcctttcct 124
              |||||||||||||||||||||
Sbjct: 913306 acctccctttcatcctttcct 913286
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>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 111    tttcatcctttcctcagtaaa 131
              |||||||||||||||||||||
Sbjct: 110594 tttcatcctttcctcagtaaa 110574
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>emb|AL731735.14| Mouse DNA sequence from clone RP23-139P21 on chromosome X, complete
              sequence
          Length = 201223

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 196    aaatgaaagaattaacagtta 216
              |||||||||||||||||||||
Sbjct: 185539 aaatgaaagaattaacagtta 185559
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>ref|XM_476313.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2304

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 tccaccaggaccataaccagtgat 278
           ||||||| ||||||||||||||||
Sbjct: 705 tccaccaagaccataaccagtgat 682
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>ref|XM_628961.1| Dictyostelium discoideum putative protein kinase (DDB0229346),
           partial mRNA
          Length = 1188

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 aatgaaagaattaacagtta 216
           ||||||||||||||||||||
Sbjct: 240 aatgaaagaattaacagtta 259
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>gb|AC016792.5| Drosophila melanogaster clone BACR26A02, complete sequence
          Length = 164971

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 534    cttctggaagagagtctacc 553
              ||||||||||||||||||||
Sbjct: 150015 cttctggaagagagtctacc 149996
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>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence
          Length = 222692

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 407   gtggttaacgttcaagttcttatt 430
             ||||||| ||||||||||||||||
Sbjct: 84288 gtggttagcgttcaagttcttatt 84311
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>gb|AC147365.4| Medicago truncatula clone mth2-10f9, complete sequence
          Length = 89850

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   aacttatcatgaatgcttat 149
             ||||||||||||||||||||
Sbjct: 88973 aacttatcatgaatgcttat 88954
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>emb|AL831732.18| Human DNA sequence from clone RP11-396L10 on chromosome 1, complete
            sequence
          Length = 38529

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 171  gagaggccaagaactccgga 190
            ||||||||||||||||||||
Sbjct: 2829 gagaggccaagaactccgga 2810
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>emb|Z50152.1|DMTRXIII D.melanogaster DNA for trxI and trxII genes
          Length = 26618

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 534 cttctggaagagagtctacc 553
           ||||||||||||||||||||
Sbjct: 640 cttctggaagagagtctacc 621
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>gb|AC092709.2| Homo sapiens chromosome 8, clone RP11-509P12, complete sequence
          Length = 178904

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 105  cctccctttcatcctttcct 124
            ||||||||||||||||||||
Sbjct: 4116 cctccctttcatcctttcct 4135
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>ref|NM_142095.2| Drosophila melanogaster CG12207-RB, transcript variant B (CG12207),
           mRNA
          Length = 2312

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 534 cttctggaagagagtctacc 553
           ||||||||||||||||||||
Sbjct: 127 cttctggaagagagtctacc 146
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>gb|AC090569.4| Homo sapiens chromosome 17, clone RP11-269M11, complete sequence
          Length = 169262

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   cctccctttcatcctttcct 124
             ||||||||||||||||||||
Sbjct: 86664 cctccctttcatcctttcct 86645
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>gb|AC027043.7| Homo sapiens chromosome 8, clone RP11-769H18, complete sequence
          Length = 155821

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    cctccctttcatcctttcct 124
              ||||||||||||||||||||
Sbjct: 118012 cctccctttcatcctttcct 118031
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>gb|AC084257.2| Homo sapiens chromosome 8, clone RP1-164F9, complete sequence
          Length = 97751

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   cctccctttcatcctttcct 124
             ||||||||||||||||||||
Sbjct: 72069 cctccctttcatcctttcct 72050
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 255     tccaccaggaccataaccagtgat 278
               ||||||| ||||||||||||||||
Sbjct: 3932554 tccaccaagaccataaccagtgat 3932531
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>gb|AC087433.4|AC087433 Homo sapiens chromosome 15 clone RP11-101J17 and RP11-501G11 map
             15q21.1, complete sequence
          Length = 185145

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   tttgataacgtcactgacat 302
             ||||||||||||||||||||
Sbjct: 61851 tttgataacgtcactgacat 61832
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>gb|AC007904.6|AC007904 Drosophila melanogaster, chromosome 3R, region 88B-88B, BAC clone
              BACR01H04, complete sequence
          Length = 190325

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    cttctggaagagagtctacc 553
              ||||||||||||||||||||
Sbjct: 169372 cttctggaagagagtctacc 169391
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>gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosome 14, complete
             sequence
          Length = 211647

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 580   gctgcagaaacccacttctg 599
             ||||||||||||||||||||
Sbjct: 78065 gctgcagaaacccacttctg 78046
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>gb|AC079154.5| Homo sapiens BAC clone RP11-314E14 from 2, complete sequence
          Length = 175387

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 162    actagagaagagaggccaagaact 185
              ||||||||||||||| ||||||||
Sbjct: 142667 actagagaagagaggacaagaact 142644
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>gb|AC018880.6| Homo sapiens BAC clone RP11-336P15 from 2, complete sequence
          Length = 127025

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 403   cttggtggttaacgttcaagttcttatt 430
             ||||||||||||| ||||| ||||||||
Sbjct: 84297 cttggtggttaacattcaacttcttatt 84270
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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   tccaccaggaccataaccagtgat 278
             ||||||| ||||||||||||||||
Sbjct: 38430 tccaccaagaccataaccagtgat 38407
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>dbj|AB046473.2| Eurypharynx pelecanoides mitochondrial DNA, compete genome
          Length = 18978

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   gctcggcttggtggttaacg 416
             ||||||||||||||||||||
Sbjct: 17572 gctcggcttggtggttaacg 17553
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>dbj|AK066933.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F19, full
           insert sequence
          Length = 2738

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 tccaccaggaccataaccagtgat 278
           ||||||| ||||||||||||||||
Sbjct: 814 tccaccaagaccataaccagtgat 791
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>gb|AE003704.3| Drosophila melanogaster chromosome 3R, section 42 of 118 of the
             complete sequence
          Length = 220679

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 534   cttctggaagagagtctacc 553
             ||||||||||||||||||||
Sbjct: 29105 cttctggaagagagtctacc 29124
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>gb|U23446.1|DMU23446 Drosophila melanogaster trithorax gene, regulatory 5' region
          Length = 2927

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 534 cttctggaagagagtctacc 553
           ||||||||||||||||||||
Sbjct: 640 cttctggaagagagtctacc 621
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>dbj|AB012766.1| Oryza sativa gene for ovp2, complete cds
          Length = 5985

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 255  tccaccaggaccataaccagtgat 278
            ||||||| ||||||||||||||||
Sbjct: 3434 tccaccaagaccataaccagtgat 3411
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>dbj|D16387.1| Asterina pectinifera mitochondrial DNA, complete genome
          Length = 16260

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   aagttcttgtaagattgaaa 54
            ||||||||||||||||||||
Sbjct: 3906 aagttcttgtaagattgaaa 3887
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>dbj|D45384.1| Oryza sativa mRNA for vacuolar H+-pyrophosphatase, complete cds
          Length = 2710

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 255 tccaccaggaccataaccagtgat 278
           ||||||| ||||||||||||||||
Sbjct: 799 tccaccaagaccataaccagtgat 776


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,355,311
Number of Sequences: 3902068
Number of extensions: 5355311
Number of successful extensions: 95927
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95806
Number of HSP's gapped (non-prelim): 121
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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