ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26j21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMC1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2... 28 4.9
2NPD2_BRAJA (Q89EA6) NAD-dependent deacetylase 2 (EC 3.5.1.-) (Re... 28 8.4
3LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) ... 28 8.4

>LAMC1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2 chain)|
          Length = 1609

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 156  CEHCYVDYLGFD*TGCKAC 100
            CE C V++ GF   GCK C
Sbjct: 965  CERCEVNHFGFGPEGCKPC 983



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>NPD2_BRAJA (Q89EA6) NAD-dependent deacetylase 2 (EC 3.5.1.-) (Regulatory|
           protein SIR2 homolog 2)
          Length = 273

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 144 YVDYLGFD*TGCKACKWILRFIVLYFVTAIDIQVVCNHGDHL 19
           + D+  F    C+AC  IL+  V++F   +   VV    DHL
Sbjct: 170 HADFSSFKVPACEACGGILKPDVVFFGENVPRDVVATAQDHL 211



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>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
           chain)
          Length = 1798

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 156 CEHCYVDYLGFD*TGCKACK 97
           C+ C   Y GF  TGC+AC+
Sbjct: 813 CDLCAPGYYGFGPTGCQACQ 832


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,156,171
Number of Sequences: 219361
Number of extensions: 315514
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 80,573,946
effective HSP length: 50
effective length of database: 69,605,896
effective search space used: 1670541504
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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