>SUI1_SPOST (Q9SM41) Protein translation factor SUI1 homolog|
          Length = 115

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 53/103 (51%), Positives = 53/103 (51%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTVQG--------------------- 298
           DPF            GSKDYVHVRIQQRNGRKSLTTVQG                     
Sbjct: 13  DPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 72

Query: 297 -----------------DQRKNVSNFLVQAGIVKKEHIKIHGF 220
                            DQRKNVSNFLVQAGIVKKEHIKIHGF
Sbjct: 73  GTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GLKKEFSY+KILKDLKKEFCC
Sbjct: 51  GLKKEFSYNKILKDLKKEFCC 71

>SUI1_ORYSA (P33278) Protein translation factor SUI1 homolog (GOS2 protein)|
          Length = 115

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 53/103 (51%), Positives = 53/103 (51%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTVQG--------------------- 298
           DPF            GSKDYVHVRIQQRNGRKSLTTVQG                     
Sbjct: 13  DPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCN 72

Query: 297 -----------------DQRKNVSNFLVQAGIVKKEHIKIHGF 220
                            DQRKNVSNFLVQAGIVKKEHIKIHGF
Sbjct: 73  GTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GLKKEFSY+KILKDLKKEFCC
Sbjct: 51  GLKKEFSYNKILKDLKKEFCC 71

>SUI1_MAIZE (P56330) Protein translation factor SUI1 homolog (GOS2 protein)|
          Length = 115

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 53/103 (51%), Positives = 53/103 (51%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTVQG--------------------- 298
           DPF            GSKDYVHVRIQQRNGRKSLTTVQG                     
Sbjct: 13  DPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCN 72

Query: 297 -----------------DQRKNVSNFLVQAGIVKKEHIKIHGF 220
                            DQRKNVSNFLVQAGIVKKEHIKIHGF
Sbjct: 73  GTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115



 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GLKKEFSYSKILKDLKKEFCC
Sbjct: 51  GLKKEFSYSKILKDLKKEFCC 71

>SUI1_SALBA (O48650) Protein translation factor SUI1 homolog|
          Length = 113

 Score = 76.3 bits (186), Expect = 4e-14
 Identities = 45/87 (51%), Positives = 49/87 (56%), Gaps = 38/87 (43%)
 Frame = -3

Query: 366 SKDYVHVRIQQRNGRKSLTTVQG------------------------------------- 298
           +KDYVHVR+QQRNGRKSLTTVQG                                     
Sbjct: 27  TKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQ 86

Query: 297 -DQRKNVSNFLVQAGIVKKEHIKIHGF 220
            DQRKNVS+FLVQAGIVKKE+IKIHGF
Sbjct: 87  GDQRKNVSSFLVQAGIVKKENIKIHGF 113



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 18/21 (85%), Positives = 21/21 (100%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GLKK++SY+KILKDLKKEFCC
Sbjct: 49  GLKKDYSYNKILKDLKKEFCC 69

>SUI12_ARATH (Q94JV4) Protein translation factor SUI1 homolog 2|
          Length = 113

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 41/87 (47%), Positives = 48/87 (55%), Gaps = 38/87 (43%)
 Frame = -3

Query: 366 SKDYVHVRIQQRNGRKSLTTVQG------------------------------------- 298
           +K+YVH+R+QQRNGRKSLTTVQG                                     
Sbjct: 27  TKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQ 86

Query: 297 -DQRKNVSNFLVQAGIVKKEHIKIHGF 220
            DQRKNVS FLVQAG+VKK++IKIHGF
Sbjct: 87  GDQRKNVSTFLVQAGLVKKDNIKIHGF 113



 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GLKKE+SYSKILKDLKKEFCC
Sbjct: 49  GLKKEYSYSKILKDLKKEFCC 69

>SUI11_ARATH (P41568) Protein translation factor SUI1 homolog 1|
          Length = 113

 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 41/87 (47%), Positives = 48/87 (55%), Gaps = 38/87 (43%)
 Frame = -3

Query: 366 SKDYVHVRIQQRNGRKSLTTVQG------------------------------------- 298
           +K+YVH+R+QQRNGRKSLTTVQG                                     
Sbjct: 27  TKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQ 86

Query: 297 -DQRKNVSNFLVQAGIVKKEHIKIHGF 220
            DQRKNVS FLVQAG+VKK++IKIHGF
Sbjct: 87  GDQRKNVSTFLVQAGLVKKDNIKIHGF 113



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GLKKE+SY+KILKDLKKEFCC
Sbjct: 49  GLKKEYSYTKILKDLKKEFCC 69

>SUI1_PIMBR (O82569) Protein translation factor SUI1 homolog|
          Length = 113

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 43/103 (41%), Positives = 49/103 (47%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTVQG--------------------- 298
           DPF             +K+YVH+RIQQRNGRKSLTTVQG                     
Sbjct: 13  DPFAEAEITDATGS--TKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCN 70

Query: 297 -----------------DQRKNVSNFLVQAGIVKKEHIKIHGF 220
                            DQRKNVS F+VQAGIVKK+ IK+H F
Sbjct: 71  GTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GLKKE SY KILKDLKK  CC
Sbjct: 49  GLKKELSYDKILKDLKKALCC 69

>SUI1_BRAOL (Q9SQF4) Protein translation factor SUI1 homolog (Translation|
           initiation factor nps45)
          Length = 113

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 40/87 (45%), Positives = 47/87 (54%), Gaps = 38/87 (43%)
 Frame = -3

Query: 366 SKDYVHVRIQQRNGRKSLTTVQG------------------------------------- 298
           +K+YVH+R+QQRNGRKSLTTVQG                                     
Sbjct: 27  TKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQ 86

Query: 297 -DQRKNVSNFLVQAGIVKKEHIKIHGF 220
            DQRKNVS FLVQAG+VKK+ I+IHGF
Sbjct: 87  GDQRKNVSTFLVQAGLVKKDDIQIHGF 113



 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GLKKE+SY+KILKDLKKEFCC
Sbjct: 49  GLKKEYSYTKILKDLKKEFCC 69

>EIF1B_PIG (P61220) Eukaryotic translation initiation factor 1b (eIF1b)|
           (Protein translation factor SUI1 homolog GC20)
          Length = 113

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTV----------------------- 304
           DPF            G++DY+H+RIQQRNGRK+LTTV                       
Sbjct: 11  DPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query: 303 ---------------QGDQRKNVSNFLVQAGIVKKEHIKIHGF 220
                          QGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113

>EIF1B_MOUSE (Q9CXU9) Eukaryotic translation initiation factor 1b (eIF1b)|
          Length = 113

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTV----------------------- 304
           DPF            G++DY+H+RIQQRNGRK+LTTV                       
Sbjct: 11  DPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query: 303 ---------------QGDQRKNVSNFLVQAGIVKKEHIKIHGF 220
                          QGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113

>EIF1B_MACFA (Q4R4X9) Eukaryotic translation initiation factor 1b (eIF1b)|
          Length = 113

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTV----------------------- 304
           DPF            G++DY+H+RIQQRNGRK+LTTV                       
Sbjct: 11  DPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query: 303 ---------------QGDQRKNVSNFLVQAGIVKKEHIKIHGF 220
                          QGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113

>EIF1B_HUMAN (O60739) Eukaryotic translation initiation factor 1b (eIF1b)|
           (Protein translation factor SUI1 homolog GC20)
          Length = 113

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTV----------------------- 304
           DPF            G++DY+H+RIQQRNGRK+LTTV                       
Sbjct: 11  DPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query: 303 ---------------QGDQRKNVSNFLVQAGIVKKEHIKIHGF 220
                          QGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113

>EIF1_PONPY (Q5RFF4) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTV----------------------- 304
           DPF            G++DY+H+RIQQRNGRK+LTTV                       
Sbjct: 11  DPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query: 303 ---------------QGDQRKNVSNFLVQAGIVKKEHIKIHGF 220
                          QGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113

>EIF1_HUMAN (P41567) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog) (Sui1iso1) (A121)
          Length = 113

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTV----------------------- 304
           DPF            G++DY+H+RIQQRNGRK+LTTV                       
Sbjct: 11  DPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query: 303 ---------------QGDQRKNVSNFLVQAGIVKKEHIKIHGF 220
                          QGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113

>EIF1_BOVIN (Q5E938) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 36/103 (34%), Positives = 47/103 (45%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTV----------------------- 304
           DPF            G++DY+H+RIQQRNGRK+LTTV                       
Sbjct: 11  DPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query: 303 ---------------QGDQRKNVSNFLVQAGIVKKEHIKIHGF 220
                          QGDQRKN+  FLV+ G+ K + +K+HGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113

>EIF1_MOUSE (P48024) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog)
          Length = 113

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 38/103 (36%)
 Frame = -3

Query: 414 DPFXXXXXXXXXXXXGSKDYVHVRIQQRNGRKSLTTV----------------------- 304
           DPF            G++DY+H+RIQQRNGRK+LTTV                       
Sbjct: 11  DPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACN 70

Query: 303 ---------------QGDQRKNVSNFLVQAGIVKKEHIKIHGF 220
                          QGDQRKN+  FL++ G+ K + +K+HGF
Sbjct: 71  GTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113

>SUI1_ANOGA (P42678) Protein translation factor SUI1 homolog|
          Length = 110

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 38/83 (45%)
 Frame = -3

Query: 354 VHVRIQQRNGRKSLTTVQG--------------------------------------DQR 289
           VH+RIQQRNGRK+LTTVQG                                      DQR
Sbjct: 28  VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRACKKEFACNGTVIEHPEYGEVLQLQGDQR 87

Query: 288 KNVSNFLVQAGIVKKEHIKIHGF 220
           +N+  +L ++G+ K E +K+HGF
Sbjct: 88  ENICQWLTKSGLAKPEQLKVHGF 110

>SUI1_ASHGO (Q755R1) Protein translation factor SUI1|
          Length = 108

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 38/87 (43%)
 Frame = -3

Query: 366 SKDYVHVRIQQRNGRKSLTTV--------------------------------------Q 301
           S +Y+H+RIQQRNGRK+LTTV                                      Q
Sbjct: 22  SSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQ 81

Query: 300 GDQRKNVSNFLVQAGIVKKEHIKIHGF 220
           GDQR  V  FL+    + K++IKIHGF
Sbjct: 82  GDQRAKVCEFLITQLAIPKKNIKIHGF 108

>SUI1_DROME (Q9VZS3) Protein translation factor SUI1 homolog|
          Length = 110

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 38/83 (45%)
 Frame = -3

Query: 354 VHVRIQQRNGRKSLTTV--------------------------------------QGDQR 289
           VH+RIQQRNGRK+LTTV                                      QGDQR
Sbjct: 28  VHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQR 87

Query: 288 KNVSNFLVQAGIVKKEHIKIHGF 220
           +N+  +L + G+ K + +K+HGF
Sbjct: 88  ENICQWLTKVGLAKPDQLKVHGF 110

>SUI1_YEAST (P32911) Protein translation factor SUI1|
          Length = 108

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 38/87 (43%)
 Frame = -3

Query: 366 SKDYVHVRIQQRNGRKSLTTV--------------------------------------Q 301
           + +Y+H+RIQQRNGRK+LTTV                                      Q
Sbjct: 22  TSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQ 81

Query: 300 GDQRKNVSNFLVQAGIVKKEHIKIHGF 220
           GDQR  V  F++    ++K++IKIHGF
Sbjct: 82  GDQRAKVCEFMISQLGLQKKNIKIHGF 108

>EIF1_CHICK (P51971) Eukaryotic translation initiation factor 1 (eIF1) (Protein|
           translation factor SUI1 homolog) (Fragment)
          Length = 79

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 38/79 (48%)
 Frame = -3

Query: 342 IQQRNGRKSLTTVQG--------------------------------------DQRKNVS 277
           IQQRNGRK+LTTVQG                                      DQRKN+ 
Sbjct: 1   IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNIC 60

Query: 276 NFLVQAGIVKKEHIKIHGF 220
            FLV+ G+ K + +K+HGF
Sbjct: 61  QFLVEIGLAKDDQLKVHGF 79

>SUI1_SCHPO (P79060) Protein translation factor sui1|
          Length = 109

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 38/83 (45%)
 Frame = -3

Query: 354 VHVRIQQRNGRKSLTTV--------------------------------------QGDQR 289
           +H+RIQQRNGRK+LTTV                                      QGDQR
Sbjct: 27  IHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQR 86

Query: 288 KNVSNFLVQAGIVKKEHIKIHGF 220
             V  FL Q   ++K++IKIHGF
Sbjct: 87  IKVMEFLTQQLGLQKKNIKIHGF 109



 Score = 28.5 bits (62), Expect = 9.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 481 GLKKEFSYSKILKDLKKEFCC 419
           GL +EF   +IL+ LKK+F C
Sbjct: 45  GLPREFDQKRILRALKKDFAC 65

>TITF1_RAT (P23441) Thyroid transcription factor 1 (Thyroid nuclear factor 1)|
           (TTF-1) (Homeobox protein Nkx-2.1)
          Length = 372

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 56  KHIRTQRGGY-ARLCVYSEGASVAPASASTQLNILHHQYILAALH 187
           K +  + GG  A L  Y +G +  PA+A  Q  + HH  + AA H
Sbjct: 25  KKVGMEGGGLGAPLAAYRQGQAAPPAAAMQQHAVGHHGAVTAAYH 69

>TITF1_MOUSE (P50220) Thyroid transcription factor 1 (Thyroid nuclear factor 1)|
           (TTF-1) (Homeobox protein Nkx-2.1)
          Length = 372

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 56  KHIRTQRGGY-ARLCVYSEGASVAPASASTQLNILHHQYILAALH 187
           K +  + GG  A L  Y +G +  PA+A  Q  + HH  + AA H
Sbjct: 25  KKVGMEGGGLGAPLAAYRQGQAAPPAAAMQQHAVGHHGAVTAAYH 69

>TITF1_CANFA (P43698) Thyroid transcription factor 1 (Thyroid nuclear factor 1)|
           (TTF-1) (Homeobox protein Nkx-2.1)
          Length = 371

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 56  KHIRTQRGGY-ARLCVYSEGASVAPASASTQLNILHHQYILAALH 187
           K +  + GG  A L  Y +G +  PA+A  Q  + HH  + AA H
Sbjct: 25  KKVGMEGGGLGAPLAAYRQGQAAPPAAAMQQHAVGHHGAVTAAYH 69

>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 258 PPGQGSLRRSSSDHPGQWSGSCDHYAAGCVHARSPLIRQLHQRPQHSPRQRGQRQQ 425
           PP  G L  +S+ HPG +  S    A    H         HQ+ Q   +Q+ Q+QQ
Sbjct: 444 PPPYGRLLANSNAHPGPFPPSTG--AQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQ 497

>V_MEASI (P26036) Nonstructural protein V|
          Length = 299

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 291 SDHPGQWSGSCDHYAAGCVHARSPLIRQLHQRPQHSPRQRGQ 416
           SD+PGQ   +C    AG      P +  +      +PR RGQ
Sbjct: 40  SDNPGQEQATCKEEEAGASGLSKPCLSAIGSTEGGAPRIRGQ 81

>PHOSP_MEASI (P26033) Phosphoprotein (Protein P)|
          Length = 507

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 291 SDHPGQWSGSCDHYAAGCVHARSPLIRQLHQRPQHSPRQRGQ 416
           SD+PGQ   +C    AG      P +  +      +PR RGQ
Sbjct: 40  SDNPGQEQATCKEEEAGASGLSKPCLSAIGSTEGGAPRIRGQ 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,849,905
Number of Sequences: 219361
Number of extensions: 1315624
Number of successful extensions: 3261
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3258
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)