Clone Name | rbasd26i22 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK091328.1| Homo sapiens cDNA FLJ34009 fis, clone FCBBF1000476, weakly similar to Homo sapiens GAP-like protein (N61) mRNA Length = 3442 Score = 42.1 bits (21), Expect = 0.44 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 tcctgaagatgatggctgcac 89 ||||||||||||||||||||| Sbjct: 2615 tcctgaagatgatggctgcac 2595
>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete sequence Length = 175731 Score = 42.1 bits (21), Expect = 0.44 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 agaatttcctgaagatgatgg 83 ||||||||||||||||||||| Sbjct: 33539 agaatttcctgaagatgatgg 33519
>emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on chromosome 1 Contains part of the gene for C-terminal PDZ domain ligand of neuronal nitric oxide synthase (CAPON), complete sequence Length = 208408 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gcaatccttcagcaccaaac 143 |||||||||||||||||||| Sbjct: 32925 gcaatccttcagcaccaaac 32906
>gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosome 12, complete sequence Length = 210589 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ttcctgaagatgatggctgc 87 |||||||||||||||||||| Sbjct: 70311 ttcctgaagatgatggctgc 70292
>emb|CT010500.11| Mouse DNA sequence from clone RP23-454F17 on chromosome 12, complete sequence Length = 186899 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 ttcctgaagatgatggctgc 87 |||||||||||||||||||| Sbjct: 72214 ttcctgaagatgatggctgc 72195
>ref|NM_180417.2| Arabidopsis thaliana unknown protein AT5G01030 transcript variant AT5G01030.2 mRNA, complete cds Length = 2770 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 gagaatttcctgaagatga 80 ||||||||||||||||||| Sbjct: 1334 gagaatttcctgaagatga 1352
>ref|NM_120180.4| Arabidopsis thaliana unknown protein AT5G01030 transcript variant AT5G01030.1 mRNA, complete cds Length = 2728 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 gagaatttcctgaagatga 80 ||||||||||||||||||| Sbjct: 1292 gagaatttcctgaagatga 1310
>ref|XM_470554.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2340 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 agaatttcctgaagatgat 81 ||||||||||||||||||| Sbjct: 2124 agaatttcctgaagatgat 2106
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 gagaatttcctgaagatga 80 ||||||||||||||||||| Sbjct: 1019733 gagaatttcctgaagatga 1019715
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 agaatttcctgaagatgat 81 ||||||||||||||||||| Sbjct: 4316125 agaatttcctgaagatgat 4316107
>ref|NM_001040226.1| Apis mellifera odorant binding protein 11 (Obp11), mRNA Length = 432 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 gagaatttcctgaagatga 80 ||||||||||||||||||| Sbjct: 179 gagaatttcctgaagatga 197
>emb|CR733825.2|CNS0GT00 Tetraodon nigroviridis full-length cDNA Length = 1866 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 1708 tactcagcagcacgtcgca 1726
>emb|CR724191.2|CNS0GLQD Tetraodon nigroviridis full-length cDNA Length = 1860 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 1701 tactcagcagcacgtcgca 1719
>emb|CR680721.1|CNS0FO71 Tetraodon nigroviridis full-length cDNA Length = 1130 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 985 tactcagcagcacgtcgca 1003
>emb|CR675728.2|CNS0FKD2 Tetraodon nigroviridis full-length cDNA Length = 1124 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 979 tactcagcagcacgtcgca 997
>emb|CR675446.2|CNS0FK58 Tetraodon nigroviridis full-length cDNA Length = 724 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 562 tactcagcagcacgtcgca 580
>emb|CR674200.2|CNS0FJ6M Tetraodon nigroviridis full-length cDNA Length = 593 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 432 tactcagcagcacgtcgca 450
>emb|CR669553.2|CNS0FFLJ Tetraodon nigroviridis full-length cDNA Length = 1043 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 882 tactcagcagcacgtcgca 900
>emb|CR669085.2|CNS0FF8J Tetraodon nigroviridis full-length cDNA Length = 677 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 516 tactcagcagcacgtcgca 534
>emb|CR665928.2|CNS0FCSU Tetraodon nigroviridis full-length cDNA Length = 1050 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 894 tactcagcagcacgtcgca 912
>emb|CR663641.2|CNS0FB1B Tetraodon nigroviridis full-length cDNA Length = 1636 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 1473 tactcagcagcacgtcgca 1491
>emb|CR658043.2|CNS0F6PT Tetraodon nigroviridis full-length cDNA Length = 1171 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 1024 tactcagcagcacgtcgca 1042
>emb|CR659892.2|CNS0F856 Tetraodon nigroviridis full-length cDNA Length = 1143 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 tactcagcagcacgtcgca 38 ||||||||||||||||||| Sbjct: 988 tactcagcagcacgtcgca 1006
>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence Length = 122810 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 agaatttcctgaagatgat 81 ||||||||||||||||||| Sbjct: 8359 agaatttcctgaagatgat 8341
>emb|AL354824.8| Human DNA sequence from clone RP11-416N4 on chromosome 20 Contains two novel genes, part of a novel gene, the 5' end of the SNAP25 gene for 25 kD synaptosomal-associated protein and 3 CpG islands, complete sequence Length = 83951 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aatttcctgaagatgatgg 83 ||||||||||||||||||| Sbjct: 26958 aatttcctgaagatgatgg 26976
>gb|AY096641.1| Arabidopsis thaliana unknown protein (At5g01030) mRNA, complete cds Length = 2727 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 gagaatttcctgaagatga 80 ||||||||||||||||||| Sbjct: 1295 gagaatttcctgaagatga 1313
>emb|AL137189.2|ATF7J8 Arabidopsis thaliana DNA chromosome 5, BAC clone F7J8 (ESSA project) Length = 118507 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 gagaatttcctgaagatga 80 ||||||||||||||||||| Sbjct: 7085 gagaatttcctgaagatga 7103
>gb|DQ435328.1| Apis mellifera OBP11 mRNA, complete cds Length = 432 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 gagaatttcctgaagatga 80 ||||||||||||||||||| Sbjct: 179 gagaatttcctgaagatga 197
>gb|AF130035.1| Heterocapsa triquetra psbC minicircle, complete sequence; chloroplast Length = 2330 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 atgtactcagcagcacgtc 35 ||||||||||||||||||| Sbjct: 1998 atgtactcagcagcacgtc 1980
>gb|AY004271.1| Heterocapsa triquetra clone circle5 aberrant minicircle, complete sequence; chloroplast Length = 2099 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 atgtactcagcagcacgtc 35 ||||||||||||||||||| Sbjct: 1593 atgtactcagcagcacgtc 1575
>gb|AY004270.1| Heterocapsa triquetra clone circle4 aberrant minicircle, complete sequence; chloroplast Length = 2045 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 atgtactcagcagcacgtc 35 ||||||||||||||||||| Sbjct: 1616 atgtactcagcagcacgtc 1598
>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G08, from Chromosome 3, complete sequence Length = 122052 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 agaatttcctgaagatgat 81 ||||||||||||||||||| Sbjct: 110372 agaatttcctgaagatgat 110390
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 agaatttcctgaagatgat 81 ||||||||||||||||||| Sbjct: 4316240 agaatttcctgaagatgat 4316222
>gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complete sequence Length = 203428 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 acagagaatttcctgaaga 77 ||||||||||||||||||| Sbjct: 189816 acagagaatttcctgaaga 189798
>gb|BT002362.1| Arabidopsis thaliana clone U10260 unknown protein (At5g01030) mRNA, complete cds Length = 2266 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 gagaatttcctgaagatga 80 ||||||||||||||||||| Sbjct: 1031 gagaatttcctgaagatga 1049
>dbj|AK100037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151A15, full insert sequence Length = 3741 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 agaatttcctgaagatgat 81 ||||||||||||||||||| Sbjct: 2700 agaatttcctgaagatgat 2682
>emb|AL671875.12| Mouse DNA sequence from clone RP23-296M12 on chromosome X, complete sequence Length = 192292 Score = 38.2 bits (19), Expect = 6.8 Identities = 21/22 (95%) Strand = Plus / Minus Query: 48 caatgatcnacacagagaattt 69 |||||||| ||||||||||||| Sbjct: 22774 caatgatccacacagagaattt 22753 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 901,119 Number of Sequences: 3902068 Number of extensions: 901119 Number of successful extensions: 52616 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52529 Number of HSP's gapped (non-prelim): 87 length of query: 143 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 122 effective length of database: 17,151,101,840 effective search space: 2092434424480 effective search space used: 2092434424480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)