ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26i22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK091328.1| Homo sapiens cDNA FLJ34009 fis, clone FCBBF10004... 42 0.44
2dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 0.44
3emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on ch... 40 1.7
4gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosom... 40 1.7
5emb|CT010500.11| Mouse DNA sequence from clone RP23-454F17 on ch... 40 1.7
6ref|NM_180417.2| Arabidopsis thaliana unknown protein AT5G01030 ... 38 6.8
7ref|NM_120180.4| Arabidopsis thaliana unknown protein AT5G01030 ... 38 6.8
8ref|XM_470554.1| Oryza sativa (japonica cultivar-group), predic... 38 6.8
9gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 38 6.8
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 6.8
11ref|NM_001040226.1| Apis mellifera odorant binding protein 11 (O... 38 6.8
12emb|CR733825.2|CNS0GT00 Tetraodon nigroviridis full-length cDNA 38 6.8
13emb|CR724191.2|CNS0GLQD Tetraodon nigroviridis full-length cDNA 38 6.8
14emb|CR680721.1|CNS0FO71 Tetraodon nigroviridis full-length cDNA 38 6.8
15emb|CR675728.2|CNS0FKD2 Tetraodon nigroviridis full-length cDNA 38 6.8
16emb|CR675446.2|CNS0FK58 Tetraodon nigroviridis full-length cDNA 38 6.8
17emb|CR674200.2|CNS0FJ6M Tetraodon nigroviridis full-length cDNA 38 6.8
18emb|CR669553.2|CNS0FFLJ Tetraodon nigroviridis full-length cDNA 38 6.8
19emb|CR669085.2|CNS0FF8J Tetraodon nigroviridis full-length cDNA 38 6.8
20emb|CR665928.2|CNS0FCSU Tetraodon nigroviridis full-length cDNA 38 6.8
21emb|CR663641.2|CNS0FB1B Tetraodon nigroviridis full-length cDNA 38 6.8
22emb|CR658043.2|CNS0F6PT Tetraodon nigroviridis full-length cDNA 38 6.8
23emb|CR659892.2|CNS0F856 Tetraodon nigroviridis full-length cDNA 38 6.8
24gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete se... 38 6.8
25emb|AL354824.8| Human DNA sequence from clone RP11-416N4 on chro... 38 6.8
26gb|AY096641.1| Arabidopsis thaliana unknown protein (At5g01030) ... 38 6.8
27emb|AL137189.2|ATF7J8 Arabidopsis thaliana DNA chromosome 5, BAC... 38 6.8
28gb|DQ435328.1| Apis mellifera OBP11 mRNA, complete cds 38 6.8
29gb|AF130035.1| Heterocapsa triquetra psbC minicircle, complete s... 38 6.8
30gb|AY004271.1| Heterocapsa triquetra clone circle5 aberrant mini... 38 6.8
31gb|AY004270.1| Heterocapsa triquetra clone circle4 aberrant mini... 38 6.8
32gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nippon... 38 6.8
33dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.8
34gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complet... 38 6.8
35gb|BT002362.1| Arabidopsis thaliana clone U10260 unknown protein... 38 6.8
36dbj|AK100037.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.8
37emb|AL671875.12| Mouse DNA sequence from clone RP23-296M12 on ch... 38 6.8

>dbj|AK091328.1| Homo sapiens cDNA FLJ34009 fis, clone FCBBF1000476, weakly similar to
            Homo sapiens GAP-like protein (N61) mRNA
          Length = 3442

 Score = 42.1 bits (21), Expect = 0.44
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 69   tcctgaagatgatggctgcac 89
            |||||||||||||||||||||
Sbjct: 2615 tcctgaagatgatggctgcac 2595



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>dbj|AP001790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-338H14, complete
             sequence
          Length = 175731

 Score = 42.1 bits (21), Expect = 0.44
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 63    agaatttcctgaagatgatgg 83
             |||||||||||||||||||||
Sbjct: 33539 agaatttcctgaagatgatgg 33519



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>emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on chromosome 1 Contains part
             of the gene for C-terminal PDZ domain ligand of neuronal
             nitric oxide synthase (CAPON), complete sequence
          Length = 208408

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   gcaatccttcagcaccaaac 143
             ||||||||||||||||||||
Sbjct: 32925 gcaatccttcagcaccaaac 32906



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>gb|AC159202.2| Mus musculus BAC clone RP23-297L21 from chromosome 12, complete
             sequence
          Length = 210589

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    ttcctgaagatgatggctgc 87
             ||||||||||||||||||||
Sbjct: 70311 ttcctgaagatgatggctgc 70292



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>emb|CT010500.11| Mouse DNA sequence from clone RP23-454F17 on chromosome 12, complete
             sequence
          Length = 186899

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    ttcctgaagatgatggctgc 87
             ||||||||||||||||||||
Sbjct: 72214 ttcctgaagatgatggctgc 72195



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>ref|NM_180417.2| Arabidopsis thaliana unknown protein AT5G01030 transcript variant
            AT5G01030.2 mRNA, complete cds
          Length = 2770

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 62   gagaatttcctgaagatga 80
            |||||||||||||||||||
Sbjct: 1334 gagaatttcctgaagatga 1352



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>ref|NM_120180.4| Arabidopsis thaliana unknown protein AT5G01030 transcript variant
            AT5G01030.1 mRNA, complete cds
          Length = 2728

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 62   gagaatttcctgaagatga 80
            |||||||||||||||||||
Sbjct: 1292 gagaatttcctgaagatga 1310



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>ref|XM_470554.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2340

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   agaatttcctgaagatgat 81
            |||||||||||||||||||
Sbjct: 2124 agaatttcctgaagatgat 2106



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 62      gagaatttcctgaagatga 80
               |||||||||||||||||||
Sbjct: 1019733 gagaatttcctgaagatga 1019715



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 63      agaatttcctgaagatgat 81
               |||||||||||||||||||
Sbjct: 4316125 agaatttcctgaagatgat 4316107



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>ref|NM_001040226.1| Apis mellifera odorant binding protein 11 (Obp11), mRNA
          Length = 432

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 62  gagaatttcctgaagatga 80
           |||||||||||||||||||
Sbjct: 179 gagaatttcctgaagatga 197



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>emb|CR733825.2|CNS0GT00 Tetraodon nigroviridis full-length cDNA
          Length = 1866

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   tactcagcagcacgtcgca 38
            |||||||||||||||||||
Sbjct: 1708 tactcagcagcacgtcgca 1726



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>emb|CR724191.2|CNS0GLQD Tetraodon nigroviridis full-length cDNA
          Length = 1860

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   tactcagcagcacgtcgca 38
            |||||||||||||||||||
Sbjct: 1701 tactcagcagcacgtcgca 1719



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>emb|CR680721.1|CNS0FO71 Tetraodon nigroviridis full-length cDNA
          Length = 1130

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   tactcagcagcacgtcgca 38
            |||||||||||||||||||
Sbjct: 985  tactcagcagcacgtcgca 1003



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>emb|CR675728.2|CNS0FKD2 Tetraodon nigroviridis full-length cDNA
          Length = 1124

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  tactcagcagcacgtcgca 38
           |||||||||||||||||||
Sbjct: 979 tactcagcagcacgtcgca 997



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>emb|CR675446.2|CNS0FK58 Tetraodon nigroviridis full-length cDNA
          Length = 724

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  tactcagcagcacgtcgca 38
           |||||||||||||||||||
Sbjct: 562 tactcagcagcacgtcgca 580



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>emb|CR674200.2|CNS0FJ6M Tetraodon nigroviridis full-length cDNA
          Length = 593

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  tactcagcagcacgtcgca 38
           |||||||||||||||||||
Sbjct: 432 tactcagcagcacgtcgca 450



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>emb|CR669553.2|CNS0FFLJ Tetraodon nigroviridis full-length cDNA
          Length = 1043

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  tactcagcagcacgtcgca 38
           |||||||||||||||||||
Sbjct: 882 tactcagcagcacgtcgca 900



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>emb|CR669085.2|CNS0FF8J Tetraodon nigroviridis full-length cDNA
          Length = 677

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  tactcagcagcacgtcgca 38
           |||||||||||||||||||
Sbjct: 516 tactcagcagcacgtcgca 534



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>emb|CR665928.2|CNS0FCSU Tetraodon nigroviridis full-length cDNA
          Length = 1050

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 20  tactcagcagcacgtcgca 38
           |||||||||||||||||||
Sbjct: 894 tactcagcagcacgtcgca 912



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>emb|CR663641.2|CNS0FB1B Tetraodon nigroviridis full-length cDNA
          Length = 1636

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   tactcagcagcacgtcgca 38
            |||||||||||||||||||
Sbjct: 1473 tactcagcagcacgtcgca 1491



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>emb|CR658043.2|CNS0F6PT Tetraodon nigroviridis full-length cDNA
          Length = 1171

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   tactcagcagcacgtcgca 38
            |||||||||||||||||||
Sbjct: 1024 tactcagcagcacgtcgca 1042



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>emb|CR659892.2|CNS0F856 Tetraodon nigroviridis full-length cDNA
          Length = 1143

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   tactcagcagcacgtcgca 38
            |||||||||||||||||||
Sbjct: 988  tactcagcagcacgtcgca 1006



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>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence
          Length = 122810

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   agaatttcctgaagatgat 81
            |||||||||||||||||||
Sbjct: 8359 agaatttcctgaagatgat 8341



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>emb|AL354824.8| Human DNA sequence from clone RP11-416N4 on chromosome 20 Contains two
             novel genes, part of a novel gene, the 5' end of the
             SNAP25 gene for 25 kD synaptosomal-associated protein and
             3 CpG islands, complete sequence
          Length = 83951

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    aatttcctgaagatgatgg 83
             |||||||||||||||||||
Sbjct: 26958 aatttcctgaagatgatgg 26976



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>gb|AY096641.1| Arabidopsis thaliana unknown protein (At5g01030) mRNA, complete cds
          Length = 2727

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 62   gagaatttcctgaagatga 80
            |||||||||||||||||||
Sbjct: 1295 gagaatttcctgaagatga 1313



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>emb|AL137189.2|ATF7J8 Arabidopsis thaliana DNA chromosome 5, BAC clone F7J8 (ESSA project)
          Length = 118507

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 62   gagaatttcctgaagatga 80
            |||||||||||||||||||
Sbjct: 7085 gagaatttcctgaagatga 7103



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>gb|DQ435328.1| Apis mellifera OBP11 mRNA, complete cds
          Length = 432

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 62  gagaatttcctgaagatga 80
           |||||||||||||||||||
Sbjct: 179 gagaatttcctgaagatga 197



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>gb|AF130035.1| Heterocapsa triquetra psbC minicircle, complete sequence; chloroplast
          Length = 2330

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 17   atgtactcagcagcacgtc 35
            |||||||||||||||||||
Sbjct: 1998 atgtactcagcagcacgtc 1980



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>gb|AY004271.1| Heterocapsa triquetra clone circle5 aberrant minicircle, complete
            sequence; chloroplast
          Length = 2099

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 17   atgtactcagcagcacgtc 35
            |||||||||||||||||||
Sbjct: 1593 atgtactcagcagcacgtc 1575



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>gb|AY004270.1| Heterocapsa triquetra clone circle4 aberrant minicircle, complete
            sequence; chloroplast
          Length = 2045

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 17   atgtactcagcagcacgtc 35
            |||||||||||||||||||
Sbjct: 1616 atgtactcagcagcacgtc 1598



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>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 63     agaatttcctgaagatgat 81
              |||||||||||||||||||
Sbjct: 110372 agaatttcctgaagatgat 110390



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 63      agaatttcctgaagatgat 81
               |||||||||||||||||||
Sbjct: 4316240 agaatttcctgaagatgat 4316222



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>gb|AC012445.6| Homo sapiens BAC clone RP11-86A21 from 2, complete sequence
          Length = 203428

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     acagagaatttcctgaaga 77
              |||||||||||||||||||
Sbjct: 189816 acagagaatttcctgaaga 189798



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>gb|BT002362.1| Arabidopsis thaliana clone U10260 unknown protein (At5g01030) mRNA,
            complete cds
          Length = 2266

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 62   gagaatttcctgaagatga 80
            |||||||||||||||||||
Sbjct: 1031 gagaatttcctgaagatga 1049



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>dbj|AK100037.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151A15, full
            insert sequence
          Length = 3741

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   agaatttcctgaagatgat 81
            |||||||||||||||||||
Sbjct: 2700 agaatttcctgaagatgat 2682



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>emb|AL671875.12| Mouse DNA sequence from clone RP23-296M12 on chromosome X, complete
             sequence
          Length = 192292

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 48    caatgatcnacacagagaattt 69
             |||||||| |||||||||||||
Sbjct: 22774 caatgatccacacagagaattt 22753


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 901,119
Number of Sequences: 3902068
Number of extensions: 901119
Number of successful extensions: 52616
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52529
Number of HSP's gapped (non-prelim): 87
length of query: 143
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 122
effective length of database: 17,151,101,840
effective search space: 2092434424480
effective search space used: 2092434424480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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