ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26i17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ILP_BRACL (P22334) Insulin-like peptide precursor [Contains: Ins... 31 2.2
2CAC2D_RABIT (P13806) Dihydropyridine-sensitive L-type, calcium c... 30 4.9
3CAC2D_HUMAN (P54289) Dihydropyridine-sensitive L-type, calcium c... 30 4.9
4TCEA3_MOUSE (P23881) Transcription elongation factor A protein 3... 29 8.4
5CAC2D_MOUSE (O08532) Dihydropyridine-sensitive L-type, calcium c... 29 8.4
6CAC2D_RAT (P54290) Dihydropyridine-sensitive L-type, calcium cha... 29 8.4

>ILP_BRACL (P22334) Insulin-like peptide precursor [Contains: Insulin-like|
           peptide B chain; Insulin-like peptide A chain]
          Length = 305

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 301 RRRSVVDDSATHAATIHVGTSIRNPYTTGPKSSTNMYTSPPKPAFAPE 444
           RRR +V++   +        S  NPY+T P ++T + T+ P+P  A +
Sbjct: 78  RRRGLVEECCYNVCDYSQLESYCNPYSTAPATATPVRTTEPQPEEAED 125



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>CAC2D_RABIT (P13806) Dihydropyridine-sensitive L-type, calcium channel|
           alpha-2/delta subunits precursor [Contains: L-type
           calcium channel alpha-2 subunit; L-type calcium channel
           delta subunit]
          Length = 1106

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 470 NSHGDKAHSSGAKAGLGGDVYILVEDLGPVVYGFRIEVPTWM 345
           N  G  A+ SG       ++YI  + L P V G +I+V +W+
Sbjct: 784 NKSGPGAYESGIMVSKAVEIYIQGKLLKPAVVGIKIDVNSWI 825



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>CAC2D_HUMAN (P54289) Dihydropyridine-sensitive L-type, calcium channel|
           alpha-2/delta subunits precursor [Contains: L-type
           calcium channel alpha-2 subunit; L-type calcium channel
           delta subunit]
          Length = 1091

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 470 NSHGDKAHSSGAKAGLGGDVYILVEDLGPVVYGFRIEVPTWM 345
           N  G  A+ SG       ++YI  + L P V G +I+V +W+
Sbjct: 769 NKSGPGAYESGIMVSKAVEIYIQGKLLKPAVVGIKIDVNSWI 810



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>TCEA3_MOUSE (P23881) Transcription elongation factor A protein 3 (Transcription|
           elongation factor S-II protein 3) (Transcription
           elongation factor TFIIS.h)
          Length = 347

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 304 RRSVVDDSATHAATIHVGTSIRNPYTTGPKSSTNMYTSPPKPAFAPELCALSPC 465
           RR  VD  ++  ++    +  R+  +     +    +SP  P FAP +C L+PC
Sbjct: 126 RRDSVDSRSSTTSSPKRPSLERSNSSKSKVETPTTPSSPSTPTFAPAVCLLAPC 179



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>CAC2D_MOUSE (O08532) Dihydropyridine-sensitive L-type, calcium channel|
           alpha-2/delta subunits precursor [Contains: L-type
           calcium channel alpha-2 subunit; L-type calcium channel
           delta subunit]
          Length = 1103

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 470 NSHGDKAHSSGAKAGLGGDVYILVEDLGPVVYGFRIEVPTWM 345
           N  G  A+ SG       ++YI  + L P V G +I+V +W+
Sbjct: 781 NKSGPGAYESGIMVSKAVELYIQGKLLKPAVVGIKIDVNSWI 822



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>CAC2D_RAT (P54290) Dihydropyridine-sensitive L-type, calcium channel|
           alpha-2/delta subunits precursor [Contains: L-type
           calcium channel alpha-2 subunit; L-type calcium channel
           delta subunit]
          Length = 1091

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 470 NSHGDKAHSSGAKAGLGGDVYILVEDLGPVVYGFRIEVPTWM 345
           N  G  A+ SG       ++YI  + L P V G +I+V +W+
Sbjct: 769 NKSGPGAYESGIMVSKAVELYIQGKLLKPAVVGIKIDVNSWI 810


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,453,490
Number of Sequences: 219361
Number of extensions: 1644298
Number of successful extensions: 3962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3960
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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