ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26i16 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 75.9 bits (185), Expect = 3e-14 Identities = 35/43 (81%), Positives = 38/43 (88%) Frame = -3 Query: 144 EXKPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLES 16 + KPETGEVIGV +S+QPSDTDLGA APK VK QGVWYAQLES Sbjct: 287 QTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 72.4 bits (176), Expect = 3e-13 Identities = 32/42 (76%), Positives = 36/42 (85%) Frame = -3 Query: 144 EXKPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 + KPETGEVIGV +S+QPSDTDLGA PK VK QG+WYAQLE Sbjct: 288 QSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 72.4 bits (176), Expect = 3e-13 Identities = 32/42 (76%), Positives = 37/42 (88%) Frame = -3 Query: 144 EXKPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 + KPETGEVIGV +S+QPSDTDLG+ APK VK QG+WYAQLE Sbjct: 288 KSKPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 72.4 bits (176), Expect = 3e-13 Identities = 32/42 (76%), Positives = 36/42 (85%) Frame = -3 Query: 144 EXKPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 + KPETGEVIGV +S+QPSDTDLGA PK VK QG+WYAQLE Sbjct: 291 QSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 71.2 bits (173), Expect = 7e-13 Identities = 33/40 (82%), Positives = 35/40 (87%) Frame = -3 Query: 138 KPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 KPETGEVIGV QS+QPSDTDLGA PK VK +GVWYAQLE Sbjct: 291 KPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 70.5 bits (171), Expect = 1e-12 Identities = 31/43 (72%), Positives = 36/43 (83%) Frame = -3 Query: 144 EXKPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLES 16 + P+TGEVIGV +S+QPSDTDLGA PK VK QG+WYAQLES Sbjct: 291 KSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 70.1 bits (170), Expect = 2e-12 Identities = 32/42 (76%), Positives = 35/42 (83%) Frame = -3 Query: 144 EXKPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 + KPETGEVIGV +S+QPSDTDLGA PK VK QGVWY QLE Sbjct: 291 KSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 69.3 bits (168), Expect = 3e-12 Identities = 31/42 (73%), Positives = 35/42 (83%) Frame = -3 Query: 144 EXKPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 + KPETGEVIGV +S+QPSDTDLGA PK VK QGVWY Q+E Sbjct: 290 KSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 69.3 bits (168), Expect = 3e-12 Identities = 35/44 (79%), Positives = 37/44 (84%) Frame = -3 Query: 144 EXKPETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLESN 13 + KPETGEVIGV +SVQPSDTDL APK VK QGVWYAQLESN Sbjct: 284 KSKPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 60.5 bits (145), Expect = 1e-09 Identities = 25/37 (67%), Positives = 30/37 (81%) Frame = -3 Query: 132 ETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQL 22 ETGE+ GV +S+QPSDTDLGA PK +K GVWYAQ+ Sbjct: 298 ETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 59.3 bits (142), Expect = 3e-09 Identities = 25/39 (64%), Positives = 31/39 (79%) Frame = -3 Query: 135 PETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 P TGE+ GV +S+QPSDTDLGA PK +K G+WYAQL+ Sbjct: 253 PVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 55.5 bits (132), Expect = 4e-08 Identities = 23/36 (63%), Positives = 28/36 (77%) Frame = -3 Query: 129 TGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQL 22 TGE+ GV +S+QPSDTDLGA PK +K G+WY QL Sbjct: 256 TGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 49.3 bits (116), Expect = 3e-06 Identities = 21/37 (56%), Positives = 29/37 (78%) Frame = -3 Query: 129 TGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 +GE+ G +S QPSDTDLGA PK VK +G++YA++E Sbjct: 237 SGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 47.4 bits (111), Expect = 1e-05 Identities = 19/39 (48%), Positives = 30/39 (76%) Frame = -3 Query: 129 TGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLESN 13 TGE+ G+ +S QPSDTDLGA P VK +G++Y +++++ Sbjct: 235 TGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 47.0 bits (110), Expect = 1e-05 Identities = 21/36 (58%), Positives = 27/36 (75%) Frame = -3 Query: 129 TGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQL 22 TGE+ GV S QPSDTDLGA P VK +G++YA++ Sbjct: 236 TGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/37 (54%), Positives = 25/37 (67%) Frame = -3 Query: 129 TGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 TGE+ G +S Q SD D+GA P VK QGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/37 (54%), Positives = 25/37 (67%) Frame = -3 Query: 129 TGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 TGE+ G +S Q SD D+GA P VK QGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 40.0 bits (92), Expect = 0.002 Identities = 18/37 (48%), Positives = 24/37 (64%) Frame = -3 Query: 129 TGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQLE 19 TGEV GV ++QPSDTD+G VK G +Y ++E Sbjct: 237 TGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>BETB_ACIAD (Q6FDF8) Betaine aldehyde dehydrogenase (EC 1.2.1.8) (BADH)| Length = 490 Score = 29.3 bits (64), Expect = 3.1 Identities = 16/37 (43%), Positives = 19/37 (51%) Frame = -3 Query: 135 PETGEVIGVXQSVQPSDTDLGAXAPKXVKXQGVWYAQ 25 P TGEVI Q Q S TD+ A + Q VW A+ Sbjct: 29 PATGEVIATIQ--QASQTDIEAAVKSAAEGQKVWAAK 63 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,118,919 Number of Sequences: 219361 Number of extensions: 127301 Number of successful extensions: 271 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 269 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 270 length of database: 80,573,946 effective HSP length: 26 effective length of database: 74,870,560 effective search space used: 1796893440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
