ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd26i16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X57408.1|TAPSB0 Wheat PsbO mRNA for 33kDa oxygen evolving protein of photosystem II Length = 1217 Score = 176 bits (89), Expect = 1e-41 Identities = 125/139 (89%), Gaps = 6/139 (4%) Strand = Plus / Minus Query: 1 tgctatgctctagttagactcgagctgcgcgtaccacacaccctggntcttgacatnctt 60 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct: 1014 tgctctgctctagttagactcgagctgcgcgtaccacacaccctggatcttgacatcctt 955 Query: 61 gggcgcctnggcgccgaggtcggtgtctgacggctgcacgctctggnngacgcctatnac 120 |||||||| |||||||||||||||||||||||||||||| | |||||| || || Sbjct: 954 gggcgcct------cgaggtcggtgtctgacggctgcacgctctcgaagacgccgatcac 901 Query: 121 ctcgccggtctccggcttg 139 ||||||||||||||||||| Sbjct: 900 ctcgccggtctccggcttg 882
>ref|NM_193698.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1002 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1000 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 941 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 940 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 881 Query: 138 tg 139 || Sbjct: 880 tg 879
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 17346636 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 17346577 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 17346576 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 17346517 Query: 138 tg 139 || Sbjct: 17346516 tg 17346515
>dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1080D07 Length = 173856 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 112897 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 112838 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 112837 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 112778 Query: 138 tg 139 || Sbjct: 112777 tg 112776
>dbj|AK119515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D11, full insert sequence Length = 1286 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1065 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1006 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 1005 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 946 Query: 138 tg 139 || Sbjct: 945 tg 944
>dbj|AK119188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G10, full insert sequence Length = 1217 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1072 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1013 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 1012 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 953 Query: 138 tg 139 || Sbjct: 952 tg 951
>dbj|AK119163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D09, full insert sequence Length = 1293 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1072 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1013 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 1012 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 953 Query: 138 tg 139 || Sbjct: 952 tg 951
>dbj|AK104760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G12, full insert sequence Length = 1292 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1069 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1010 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 1009 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 950 Query: 138 tg 139 || Sbjct: 949 tg 948
>dbj|AK104649.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B02, full insert sequence Length = 1272 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1049 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 990 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 989 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 930 Query: 138 tg 139 || Sbjct: 929 tg 928
>dbj|AK104080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A06, full insert sequence Length = 1159 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1049 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 990 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 989 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 930 Query: 138 tg 139 || Sbjct: 929 tg 928
>dbj|AK103937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G02, full insert sequence Length = 1290 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1069 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1010 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 1009 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 950 Query: 138 tg 139 || Sbjct: 949 tg 948
>dbj|AK103920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B04, full insert sequence Length = 1313 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1052 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 993 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 992 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 933 Query: 138 tg 139 || Sbjct: 932 tg 931
>dbj|AK067715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119C03, full insert sequence Length = 1332 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1074 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1015 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 1014 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 955 Query: 138 tg 139 || Sbjct: 954 tg 953
>dbj|AK060886.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B05, full insert sequence Length = 1208 Score = 143 bits (72), Expect = 2e-31 Identities = 108/122 (88%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 1069 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1010 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccggct 137 |||| ||||| |||||||||||||||| | |||||| || |||||||||||||| |||| Sbjct: 1009 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 950 Query: 138 tg 139 || Sbjct: 949 tg 948
>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence Length = 1460 Score = 121 bits (61), Expect = 6e-25 Identities = 101/118 (85%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccga 77 |||||||||| |||||||| | ||| ||||||||| ||||||||||| ||| |||| Sbjct: 1322 actcgagctgagcgtaccagannnnntggatcttgacatccttgggcgccttggccccga 1263 Query: 78 ggtcggtgtctgacggctgcacgctctggnngacgcctatnacctcgccggtctccgg 135 |||||||||| |||||||||||||||| | |||||| || ||||||||||||||||| Sbjct: 1262 ggtcggtgtcggacggctgcacgctctcgaagacgccgatgacctcgccggtctccgg 1205
>dbj|D21109.1|RICYK174 Oryza sativa mRNA for oxygen-evolving protein, partial sequence Length = 328 Score = 65.9 bits (33), Expect = 3e-08 Identities = 50/57 (87%) Strand = Plus / Minus Query: 22 gagctgcgcgtaccacacaccctggntcttgacatncttgggcgcctnggcgccgag 78 |||||||||||||||||| || ||| ||||||||| ||||||| ||| |||||||| Sbjct: 86 gagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttngcgccgag 30
>dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0507H06 Length = 136351 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 actcgagctgcgcgtaccacac 39 |||||||||||||||||||||| Sbjct: 28 actcgagctgcgcgtaccacac 7
>gb|AY453355.1| Uncultured bacterium clone C25 dissimilatory membrane-bound nitrate reductase (narG) gene, partial cds Length = 653 Score = 38.2 bits (19), Expect = 7.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 ctcgccggtctccggcttg 139 ||||||||||||||||||| Sbjct: 174 ctcgccggtctccggcttg 156
>ref|XM_658717.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6205.2), mRNA Length = 1965 Score = 38.2 bits (19), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 5 atgctctagttagactcgagctg 27 ||||||| ||||||||||||||| Sbjct: 184 atgctcttgttagactcgagctg 162 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 284,075 Number of Sequences: 3902068 Number of extensions: 284075 Number of successful extensions: 17885 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17853 Number of HSP's gapped (non-prelim): 32 length of query: 152 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 131 effective length of database: 17,151,101,840 effective search space: 2246794341040 effective search space used: 2246794341040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
