ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26i15 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 77.4 bits (189), Expect = 9e-15 Identities = 36/41 (87%), Positives = 37/41 (90%) Frame = -1 Query: 244 KPETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLES 122 KPETGEVIGVF S+QPSD DLG KAPK VKIQGVWYAQLES Sbjct: 289 KPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 75.5 bits (184), Expect = 3e-14 Identities = 34/40 (85%), Positives = 36/40 (90%) Frame = -1 Query: 244 KPETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 KPETGEVIGVF S+QPSD DLG KAPK VKIQG+WYAQLE Sbjct: 290 KPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 73.9 bits (180), Expect = 1e-13 Identities = 33/40 (82%), Positives = 35/40 (87%) Frame = -1 Query: 244 KPETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 KPETGEVIGVF S+QPSD DLG K PK VKIQG+WYAQLE Sbjct: 290 KPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 73.9 bits (180), Expect = 1e-13 Identities = 33/40 (82%), Positives = 35/40 (87%) Frame = -1 Query: 244 KPETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 KPETGEVIGVF S+QPSD DLG K PK VKIQG+WYAQLE Sbjct: 293 KPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 72.4 bits (176), Expect = 3e-13 Identities = 33/40 (82%), Positives = 35/40 (87%) Frame = -1 Query: 244 KPETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 KPETGEVIGVF S+QPSD DLG K PK VKI+GVWYAQLE Sbjct: 291 KPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 72.4 bits (176), Expect = 3e-13 Identities = 32/40 (80%), Positives = 35/40 (87%) Frame = -1 Query: 241 PETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLES 122 P+TGEVIGVF S+QPSD DLG K PK VKIQG+WYAQLES Sbjct: 294 PQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 72.0 bits (175), Expect = 4e-13 Identities = 33/40 (82%), Positives = 34/40 (85%) Frame = -1 Query: 244 KPETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 KPETGEVIGVF S+QPSD DLG K PK VKIQGVWY QLE Sbjct: 293 KPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 71.2 bits (173), Expect = 6e-13 Identities = 36/42 (85%), Positives = 37/42 (88%) Frame = -1 Query: 244 KPETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLESN 119 KPETGEVIGVF SVQPSD DL +APK VKIQGVWYAQLESN Sbjct: 286 KPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 71.2 bits (173), Expect = 6e-13 Identities = 32/40 (80%), Positives = 34/40 (85%) Frame = -1 Query: 244 KPETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 KPETGEVIGVF S+QPSD DLG K PK VKIQGVWY Q+E Sbjct: 292 KPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 61.2 bits (147), Expect = 7e-10 Identities = 25/39 (64%), Positives = 31/39 (79%) Frame = -1 Query: 241 PETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 P TGE+ GVF S+QPSD DLG K PK +K+ G+WYAQL+ Sbjct: 253 PVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 60.5 bits (145), Expect = 1e-09 Identities = 25/37 (67%), Positives = 29/37 (78%) Frame = -1 Query: 238 ETGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQL 128 ETGE+ GVF S+QPSD DLG K PK +K GVWYAQ+ Sbjct: 298 ETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 57.8 bits (138), Expect = 7e-09 Identities = 24/36 (66%), Positives = 28/36 (77%) Frame = -1 Query: 235 TGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQL 128 TGE+ GVF S+QPSD DLG K PK +KI G+WY QL Sbjct: 256 TGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 50.1 bits (118), Expect = 2e-06 Identities = 22/36 (61%), Positives = 28/36 (77%) Frame = -1 Query: 235 TGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQL 128 TGE+ GVF S QPSD DLG K P VKI+G++YA++ Sbjct: 236 TGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 49.3 bits (116), Expect = 3e-06 Identities = 21/37 (56%), Positives = 28/37 (75%) Frame = -1 Query: 235 TGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 +GE+ G F S QPSD DLG PK VKI+G++YA++E Sbjct: 237 SGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 49.3 bits (116), Expect = 3e-06 Identities = 19/39 (48%), Positives = 30/39 (76%) Frame = -1 Query: 235 TGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLESN 119 TGE+ G+F S QPSD DLG K P VK++G++Y +++++ Sbjct: 235 TGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 45.4 bits (106), Expect = 4e-05 Identities = 21/37 (56%), Positives = 25/37 (67%) Frame = -1 Query: 235 TGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 TGE+ G F S Q SD D+G P VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 45.4 bits (106), Expect = 4e-05 Identities = 21/37 (56%), Positives = 25/37 (67%) Frame = -1 Query: 235 TGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 TGE+ G F S Q SD D+G P VKIQGV+YA +E Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 44.3 bits (103), Expect = 8e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = -1 Query: 235 TGEVIGVFXSVQPSDXDLGXKAPKXVKIQGVWYAQLE 125 TGEV GVF ++QPSD D+G K VK+ G +Y ++E Sbjct: 237 TGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273
>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 28.1 bits (61), Expect = 6.3 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 50 FLSTDQPTYACTKDEYL--HXCYALVRLELRVPHTLDLDXLG 169 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138
>KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 28.1 bits (61), Expect = 6.3 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = +2 Query: 50 FLSTDQPTYACTKDEYL--HXCYALVRLELRVPHTLDLDXLG 169 F S+ + T A K E+L H C + LE + H LD D G Sbjct: 97 FESSQKNTIALEKAEFLRDHVCVSPQELETLIQHALDADNAG 138
>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 5193 Score = 27.7 bits (60), Expect = 8.2 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 29 THCCLDSFLSTDQPTYACTKDEYL 100 T C D L QP Y+C +D+Y+ Sbjct: 3180 TKVCCDGLLYDPQPGYSCCEDKYI 3203
>PI52A_CHICK (Q5F356) Phosphatidylinositol-4-phosphate 5-kinase type-2 alpha (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II alpha) (1-phosphatidylinositol-4-phosphate 5-kinase 2-alpha) (PtdIns(4)P-5-kinase isoform 2-alpha) (PIP5KII-alpha Length = 405 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 7 FILDTHTNTLLPRFFPLHRPT 69 FI++ H NTLLP+F ++R T Sbjct: 164 FIVECHGNTLLPQFLGMYRLT 184
>PI52B_RAT (O88377) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Diph Length = 416 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 7 FILDTHTNTLLPRFFPLHRPT 69 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_MOUSE (Q80XI4) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 7 FILDTHTNTLLPRFFPLHRPT 69 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190
>PI52B_HUMAN (P78356) Phosphatidylinositol-4-phosphate 5-kinase type-2 beta (EC| 2.7.1.68) (Phosphatidylinositol-4-phosphate 5-kinase type II beta) (1-phosphatidylinositol-4-phosphate 5-kinase 2-beta) (PtdIns(4)P-5-kinase isoform 2-beta) (PIP5KII-beta) (Di Length = 416 Score = 27.7 bits (60), Expect = 8.2 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 7 FILDTHTNTLLPRFFPLHRPT 69 FI++ H NTLLP+F ++R T Sbjct: 170 FIVECHGNTLLPQFLGMYRLT 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,917,245 Number of Sequences: 219361 Number of extensions: 485522 Number of successful extensions: 1303 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 1289 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1302 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
