ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26i15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X57408.1|TAPSB0 Wheat PsbO mRNA for 33kDa oxygen evolving pr... 283 1e-73
2ref|NM_193698.1| Oryza sativa (japonica cultivar-group), predic... 165 8e-38
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 165 8e-38
4dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic D... 165 8e-38
5dbj|AK119515.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
6dbj|AK119188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
7dbj|AK119163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
8dbj|AK104760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
9dbj|AK104649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
10dbj|AK104080.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
11dbj|AK103937.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
12dbj|AK103920.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
13dbj|AK067715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
14dbj|AK060886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 8e-38
15gb|AY109341.1| Zea mays CL4601_3 mRNA sequence 135 7e-29
16dbj|D21109.1|RICYK174 Oryza sativa mRNA for oxygen-evolving prot... 72 9e-10
17gb|AC132302.3| Mus musculus BAC clone RP24-279N5 from chromosome... 44 0.20
18gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, compl... 44 0.20
19dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.20
20gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, co... 42 0.81
21gb|AC147721.6| Mus musculus chromosome 10, clone RP24-250J7, com... 42 0.81
22gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosom... 42 0.81
23gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, comp... 42 0.81
24emb|AL596022.12| Zebrafish DNA sequence from clone BUSM1-107O16 ... 42 0.81
25gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, comp... 42 0.81
26emb|BX539317.4| Zebrafish DNA sequence from clone DKEY-170L10 in... 42 0.81
27gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, com... 42 0.81
28emb|AL590148.8| Zebrafish DNA sequence from clone RP71-30I22 in ... 42 0.81
29dbj|AP006108.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 0.81
30gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, com... 42 0.81
31emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chro... 42 0.81
32emb|AL445385.4|CNS07ED1 Human chromosome 14 DNA sequence BAC R-1... 42 0.81
33gb|AC164103.5| Mus musculus BAC clone RP23-427D2 from chromosome... 40 3.2
34gb|AC134438.3| Mus musculus BAC clone RP24-470G3 from chromosome... 40 3.2
35gb|AC140233.3| Mus musculus BAC clone RP23-282N19 from chromosom... 40 3.2
36gb|AC124482.3| Mus musculus BAC clone RP24-120B3 from chromosome... 40 3.2
37gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosom... 40 3.2
38gb|AC092089.2| Danio rerio clone 85I7, complete sequence 40 3.2
39gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, compl... 40 3.2
40gb|AC122808.3| Mus musculus BAC clone RP23-298M23 from 3, comple... 40 3.2
41gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, com... 40 3.2
42emb|AL731544.11| Human DNA sequence from clone RP11-514F8 on chr... 40 3.2
43emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chro... 40 3.2
44emb|AL589844.4| Human DNA sequence from clone RP11-436F21 on chr... 40 3.2
45gb|AC108484.25| Mus musculus strain 129/Sv clone ct7-293m19 map ... 40 3.2
46emb|CR628395.7| Zebrafish DNA sequence from clone DKEY-165E24, c... 40 3.2
47emb|BX005114.6| Mouse DNA sequence from clone RP24-199F23 on chr... 40 3.2
48gb|AC116693.23| Mus musculus chromosome 8, clone RP24-372D19, co... 40 3.2
49gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, comp... 40 3.2
50gb|AC154576.2| Mus musculus BAC clone RP23-372B6 from chromosome... 40 3.2
51gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, comple... 40 3.2
52gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, comple... 40 3.2
53gb|AC092620.2| Homo sapiens BAC clone RP11-231E19 from 2, comple... 40 3.2
54gb|AC010281.4|AC010281 Homo sapiens chromosome 5 clone CTC-553B9... 40 3.2
55emb|CR854941.8| Zebrafish DNA sequence from clone CH211-214G6 in... 40 3.2
56gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, compl... 40 3.2
57emb|AL117672.5|CNS01DRN Human chromosome 14 DNA sequence BAC R-1... 40 3.2
58emb|AL162311.5|CNS01RHR Human chromosome 14 DNA sequence BAC R-3... 40 3.2
59dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.2
60emb|CR933820.6| Zebrafish DNA sequence from clone DKEY-183J2 in ... 40 3.2
61emb|AL954861.11| Zebrafish DNA sequence from clone CH211-8I17, c... 40 3.2
62emb|CT009600.12| Mouse DNA sequence from clone RP23-76M10 on chr... 40 3.2
63gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, comple... 40 3.2
64gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, comple... 40 3.2
65gb|AC150685.2| Mus musculus BAC clone RP23-239C12 from 19, compl... 40 3.2
66emb|AL137818.4|CNS01DWP Human chromosome 14 DNA sequence BAC R-1... 40 3.2 
>emb|X57408.1|TAPSB0 Wheat PsbO mRNA for 33kDa oxygen evolving protein of photosystem II
          Length = 1217

 Score =  283 bits (143), Expect = 1e-73
 Identities = 216/240 (90%), Gaps = 10/240 (4%)
 Strand = Plus / Minus

                                                                        
Query: 11   tactagatacacacacaaacaca--ttgttgcctcgattctttcctctccaccgaccaac 68
            |||||||||||||||| ||||||  |||||||||||||| ||||||||||||||| ||||
Sbjct: 1114 tactagatacacacaccaacacacattgttgcctcgattgtttcctctccaccgatcaac 1055

                                                                        
Query: 69   ccacgtatgcatgcacaaaagat--gagtatcttcacttntgctatgctctagttagact 126
            ||||||| ||||||||| |||||  ||   ||||||||| |||| |||||||||||||||
Sbjct: 1054 ccacgtacgcatgcacacaagataggatcttcttcacttctgctctgctctagttagact 995

                                                                        
Query: 127  cgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccgaggt 186
            |||||||||||||||||||||||||||||||||||| |||||||||||      ||||||
Sbjct: 994  cgagctgcgcgtaccacacaccctggatcttgacatccttgggcgcct------cgaggt 941

                                                                        
Query: 187  cggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggcttgc 246
            ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 940  cggtgtctgacggctgcacgctctcgaagacgccgatcacctcgccggtctccggcttgc 881
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>ref|NM_193698.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1002

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1000 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 941

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 940  ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 881

               
Query: 244  tgc 246
            |||
Sbjct: 880  tgc 878
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                            
Query: 124      actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
                |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 17346636 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 17346577

                                                                            
Query: 184      ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
                |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 17346576 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 17346517

                   
Query: 244      tgc 246
                |||
Sbjct: 17346516 tgc 17346514
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>dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1080D07
          Length = 173856

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                          
Query: 124    actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
              |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 112897 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 112838

                                                                          
Query: 184    ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
              |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 112837 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 112778

                 
Query: 244    tgc 246
              |||
Sbjct: 112777 tgc 112775
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>dbj|AK119515.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-D11, full
            insert sequence
          Length = 1286

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1065 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1006

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 1005 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 946

               
Query: 244  tgc 246
            |||
Sbjct: 945  tgc 943
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>dbj|AK119188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-G10, full
            insert sequence
          Length = 1217

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1072 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1013

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 1012 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 953

               
Query: 244  tgc 246
            |||
Sbjct: 952  tgc 950
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>dbj|AK119163.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D09, full
            insert sequence
          Length = 1293

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1072 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1013

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 1012 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 953

               
Query: 244  tgc 246
            |||
Sbjct: 952  tgc 950
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>dbj|AK104760.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G12, full
            insert sequence
          Length = 1292

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1069 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1010

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 1009 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 950

               
Query: 244  tgc 246
            |||
Sbjct: 949  tgc 947
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>dbj|AK104649.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B02, full
            insert sequence
          Length = 1272

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1049 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 990

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 989  ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 930

               
Query: 244  tgc 246
            |||
Sbjct: 929  tgc 927
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>dbj|AK104080.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A06, full
            insert sequence
          Length = 1159

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1049 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 990

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 989  ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 930

               
Query: 244  tgc 246
            |||
Sbjct: 929  tgc 927
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>dbj|AK103937.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G02, full
            insert sequence
          Length = 1290

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1069 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1010

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 1009 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 950

               
Query: 244  tgc 246
            |||
Sbjct: 949  tgc 947
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>dbj|AK103920.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B04, full
            insert sequence
          Length = 1313

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1052 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 993

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 992  ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 933

               
Query: 244  tgc 246
            |||
Sbjct: 932  tgc 930
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>dbj|AK067715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119C03, full
            insert sequence
          Length = 1332

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1074 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1015

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 1014 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 955

               
Query: 244  tgc 246
            |||
Sbjct: 954  tgc 952
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>dbj|AK060886.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B05, full
            insert sequence
          Length = 1208

 Score =  165 bits (83), Expect = 8e-38
 Identities = 112/123 (91%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||||||||||||||| || ||||||||||||| ||||||| |||||| |||||
Sbjct: 1069 actcgagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttggcgccga 1010

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||| | ||| |||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct: 1009 ggtctgtgtccgacggctgcacgctctcgaagacgccaatcacctcgccggtctctggct 950

               
Query: 244  tgc 246
            |||
Sbjct: 949  tgc 947
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>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence
          Length = 1460

 Score =  135 bits (68), Expect = 7e-29
 Identities = 107/123 (86%)
 Strand = Plus / Minus

                                                                        
Query: 124  actcgagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccga 183
            |||||||||| |||||||| |     ||||||||||||| ||||||||||||||  ||||
Sbjct: 1322 actcgagctgagcgtaccagannnnntggatcttgacatccttgggcgccttggccccga 1263

                                                                        
Query: 184  ggtcggngtctgacggctgcacgctctngaagacgcctatcacctcgccggtctccggct 243
            |||||| ||| |||||||||||||||| ||||||||| || ||||||||||||||||| |
Sbjct: 1262 ggtcggtgtcggacggctgcacgctctcgaagacgccgatgacctcgccggtctccgggt 1203

               
Query: 244  tgc 246
            |||
Sbjct: 1202 tgc 1200
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>dbj|D21109.1|RICYK174 Oryza sativa mRNA for oxygen-evolving protein, partial sequence
          Length = 328

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 128 gagctgcgcgtaccacacaccctggatcttgacatncttgggcgccttggngccgag 184
           |||||||||||||||||| || ||||||||||||| ||||||| |||| | ||||||
Sbjct: 86  gagctgcgcgtaccacaccccttggatcttgacatccttgggcaccttngcgccgag 30
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>gb|AC132302.3| Mus musculus BAC clone RP24-279N5 from chromosome 3, complete sequence
          Length = 157307

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 14    tagatacacacacaaacacatt 35
             ||||||||||||||||||||||
Sbjct: 90658 tagatacacacacaaacacatt 90679
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>gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, complete sequence
          Length = 210003

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 14     tagatacacacacaaacacatt 35
              ||||||||||||||||||||||
Sbjct: 171881 tagatacacacacaaacacatt 171902
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>dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0507H06
          Length = 136351

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 124 actcgagctgcgcgtaccacac 145
           ||||||||||||||||||||||
Sbjct: 28  actcgagctgcgcgtaccacac 7
to top
>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence
          Length = 169321

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 9     tatactagatacacacacaaacaca 33
             ||||||||||||||||||| |||||
Sbjct: 99393 tatactagatacacacacacacaca 99417
to top
>gb|AC147721.6| Mus musculus chromosome 10, clone RP24-250J7, complete sequence
          Length = 70656

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 17    atacacacacaaacacattgttgcc 41
             ||||||||||| |||||||||||||
Sbjct: 66999 atacacacacatacacattgttgcc 66975
to top
>gb|AC132610.3| Mus musculus BAC clone RP23-374N15 from chromosome 6, complete sequence
          Length = 195587

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     acacacacaaacacattgttg 39
              |||||||||||||||||||||
Sbjct: 125345 acacacacaaacacattgttg 125325
to top
>gb|AC099601.6| Mus musculus chromosome 7, clone RP23-240K1, complete sequence
          Length = 252659

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     atacacacacaaacacattgt 37
              |||||||||||||||||||||
Sbjct: 110153 atacacacacaaacacattgt 110173
to top
>emb|AL596022.12| Zebrafish DNA sequence from clone BUSM1-107O16 in linkage group 17
             Contains part of a novel gene for a protein similar to
             vertebrate anaplastic lymphoma kinase  (ALK) and leukocyte
             tyrosine kinase receptor prescursor (LTK or TYK1) and part
             of a novel gene for a protein similar to vertebrate
             inositol 1,4,5-triphosphate 3-kinase (ITPKA), complete
             sequence
          Length = 121941

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acacacacaaacacattgttg 39
             |||||||||||||||||||||
Sbjct: 38879 acacacacaaacacattgttg 38899
to top
>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence
          Length = 167898

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     tagatacacacacaaacacat 34
              |||||||||||||||||||||
Sbjct: 108202 tagatacacacacaaacacat 108222
to top
>emb|BX539317.4| Zebrafish DNA sequence from clone DKEY-170L10 in linkage group 17,
             complete sequence
          Length = 117893

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    acacacacaaacacattgttg 39
             |||||||||||||||||||||
Sbjct: 35597 acacacacaaacacattgttg 35617
to top
>gb|AC117622.10| Mus musculus chromosome 5, clone RP23-114L5, complete sequence
          Length = 185368

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 14   tagatacacacacaaacacat 34
            |||||||||||||||||||||
Sbjct: 1814 tagatacacacacaaacacat 1834
to top
>emb|AL590148.8| Zebrafish DNA sequence from clone RP71-30I22 in linkage group 8 Contains
              part of a novel gene for a protein similar to human
              FLJ12550, the pim1 gene for pim-1 oncogene (proviral
              integration site 1), part of a novel gene for a protein
              similar to vertebrate UDP-galactose transporters, a novel
              gene for a protein similar to vertebrate caldesmon 1
              (CALD1) and a CpG island, complete sequence
          Length = 140984

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     tagatacacacacaaacacat 34
              |||||||||||||||||||||
Sbjct: 123340 tagatacacacacaaacacat 123360
to top
>dbj|AP006108.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT11O06, TM0194,
             complete sequence
          Length = 108277

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 123   gactcgagctgcgcgtaccacacaccctggatcttgacatnctt 166
             ||||||||||| || ||||| || ||||||||||| |||| |||
Sbjct: 66564 gactcgagctgagcataccaaactccctggatcttcacatcctt 66607
to top
>gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, complete sequence
          Length = 167344

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 14     tagatacacacacaaacacat 34
              |||||||||||||||||||||
Sbjct: 126906 tagatacacacacaaacacat 126886
to top
>emb|AL928553.8| Mouse DNA sequence from clone RP23-312N5 on chromosome 2, complete
             sequence
          Length = 148202

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 19    acacacacaaacacattgttgcctc 43
             ||||||||| |||||||||||||||
Sbjct: 84913 acacacacacacacattgttgcctc 84937
to top
>emb|AL445385.4|CNS07ED1 Human chromosome 14 DNA sequence BAC R-126I9 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163784

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 15     agatacacacacaaacacatt 35
              |||||||||||||||||||||
Sbjct: 120308 agatacacacacaaacacatt 120288
to top
>gb|AC164103.5| Mus musculus BAC clone RP23-427D2 from chromosome 5, complete sequence
          Length = 188588

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    agatacacacacaaacacat 34
             ||||||||||||||||||||
Sbjct: 31552 agatacacacacaaacacat 31571
to top
>gb|AC134438.3| Mus musculus BAC clone RP24-470G3 from chromosome 5, complete sequence
          Length = 140395

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    agatacacacacaaacacat 34
             ||||||||||||||||||||
Sbjct: 50855 agatacacacacaaacacat 50836
to top
>gb|AC140233.3| Mus musculus BAC clone RP23-282N19 from chromosome 19, complete
             sequence
          Length = 195305

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 29760 tagatacacacacaaacaca 29779
to top
>gb|AC124482.3| Mus musculus BAC clone RP24-120B3 from chromosome 14, complete sequence
          Length = 165934

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 10     atactagatacacacacaaacaca 33
              |||||||| |||||||||||||||
Sbjct: 143560 atactagacacacacacaaacaca 143583
to top
>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence
          Length = 184128

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 6      ttttatactagatacacacacaaacaca 33
              |||||| ||||||||||||||| |||||
Sbjct: 110726 ttttattctagatacacacacacacaca 110753
to top
>gb|AC092089.2| Danio rerio clone 85I7, complete sequence
          Length = 62442

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   acacacacaaacacattgtt 38
            ||||||||||||||||||||
Sbjct: 7761 acacacacaaacacattgtt 7780
to top
>gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, complete sequence
          Length = 206833

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     agatacacacacaaacacat 34
              ||||||||||||||||||||
Sbjct: 110575 agatacacacacaaacacat 110556
to top
>gb|AC122808.3| Mus musculus BAC clone RP23-298M23 from 3, complete sequence
          Length = 190130

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tagatacacacacaaacaca 33
              ||||||||||||||||||||
Sbjct: 128133 tagatacacacacaaacaca 128114



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tagatacacacacaaacaca 33
              ||||||||||||||||||||
Sbjct: 127995 tagatacacacacaaacaca 127976
to top
>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 6      ttttatactagatacacacacaaacaca 33
              |||||| ||||||||||||||| |||||
Sbjct: 209933 ttttattctagatacacacacacacaca 209960
to top
>emb|AL731544.11| Human DNA sequence from clone RP11-514F8 on chromosome 10 Contains the
             3' end of the gene for a novel SH2 domain-containing
             protein, a novel gene and a CpG island, complete sequence
          Length = 98873

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    agatacacacacaaacacat 34
             ||||||||||||||||||||
Sbjct: 89120 agatacacacacaaacacat 89101
to top
>emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chromosome 1 Contains the
             5' end of the SLICK gene for a sodium- and
             chloride-activated ATP-sensitive potassium channel,
             complete sequence
          Length = 185560

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 63208 tagatacacacacaaacaca 63227
to top
>emb|AL589844.4| Human DNA sequence from clone RP11-436F21 on chromosome 9 Contains the
             3' end of a novel gene and 5'end of a novel gene, complete
             sequence
          Length = 157982

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 62246 tagatacacacacaaacaca 62265
to top
>gb|AC108484.25| Mus musculus strain 129/Sv clone ct7-293m19 map 19, complete sequence
          Length = 170321

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 39142 tagatacacacacaaacaca 39161
to top
>emb|CR628395.7| Zebrafish DNA sequence from clone DKEY-165E24, complete sequence
          Length = 250797

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     cacacacaaacacattgttg 39
              ||||||||||||||||||||
Sbjct: 160427 cacacacaaacacattgttg 160408
to top
>emb|BX005114.6| Mouse DNA sequence from clone RP24-199F23 on chromosome 11 no genes,
             complete sequence
          Length = 135695

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 39625 tagatacacacacaaacaca 39606
to top
>gb|AC116693.23| Mus musculus chromosome 8, clone RP24-372D19, complete sequence
          Length = 163719

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 34550 tagatacacacacaaacaca 34531



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 34305 tagatacacacacaaacaca 34286
to top
>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence
          Length = 191309

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 14     tagatacacacacaaacaca 33
              ||||||||||||||||||||
Sbjct: 173809 tagatacacacacaaacaca 173828
to top
>gb|AC154576.2| Mus musculus BAC clone RP23-372B6 from chromosome 14, complete sequence
          Length = 152380

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    agatacacacacaaacacat 34
             ||||||||||||||||||||
Sbjct: 71581 agatacacacacaaacacat 71600
to top
>gb|AC006375.4| Homo sapiens BAC clone RP11-362A15 from 2, complete sequence
          Length = 111073

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 10   atactagatacacacacaaacaca 33
            |||||| |||||||||||||||||
Sbjct: 5616 atactacatacacacacaaacaca 5639
to top
>gb|AC009498.4| Homo sapiens BAC clone RP11-507C18 from 2, complete sequence
          Length = 199954

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     ttgcctcgattctttcctct 56
              ||||||||||||||||||||
Sbjct: 120467 ttgcctcgattctttcctct 120448
to top
>gb|AC092620.2| Homo sapiens BAC clone RP11-231E19 from 2, complete sequence
          Length = 151037

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    agatacacacacaaacacat 34
             ||||||||||||||||||||
Sbjct: 28057 agatacacacacaaacacat 28038
to top
>gb|AC010281.4|AC010281 Homo sapiens chromosome 5 clone CTC-553B9, complete sequence
          Length = 160378

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 61566 tagatacacacacaaacaca 61547
to top
>emb|CR854941.8| Zebrafish DNA sequence from clone CH211-214G6 in linkage group 12,
             complete sequence
          Length = 135174

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 13    ctagatacacacacaaacacattg 36
             ||||||||||||||| ||||||||
Sbjct: 23476 ctagatacacacacatacacattg 23453
to top
>gb|AC153016.2| Mus musculus BAC clone RP23-182K18 from 13, complete sequence
          Length = 224420

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     agatacacacacaaacacat 34
              ||||||||||||||||||||
Sbjct: 149739 agatacacacacaaacacat 149758
to top
>emb|AL117672.5|CNS01DRN Human chromosome 14 DNA sequence BAC R-142C1 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 179902

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 5     gttttatactagatacacacacaaacac 32
             ||||||||||||| ||| ||||||||||
Sbjct: 77284 gttttatactagacacaaacacaaacac 77311
to top
>emb|AL162311.5|CNS01RHR Human chromosome 14 DNA sequence BAC R-317N8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167127

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tagatacacacacaaacaca 33
              ||||||||||||||||||||
Sbjct: 144515 tagatacacacacaaacaca 144496
to top
>dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-90I16, complete
             sequence
          Length = 154159

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    atacacacacaaacacattg 36
             ||||||||||||||||||||
Sbjct: 63890 atacacacacaaacacattg 63909
to top
>emb|CR933820.6| Zebrafish DNA sequence from clone DKEY-183J2 in linkage group 11,
              complete sequence
          Length = 230267

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 10     atactagatacacacacaaacaca 33
              |||||||| |||||||||||||||
Sbjct: 172576 atactagacacacacacaaacaca 172599
to top
>emb|AL954861.11| Zebrafish DNA sequence from clone CH211-8I17, complete sequence
          Length = 175026

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 85842 tagatacacacacaaacaca 85823
to top
>emb|CT009600.12| Mouse DNA sequence from clone RP23-76M10 on chromosome 14, complete
              sequence
          Length = 217257

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     atactagatacacacacaaacaca 33
              |||||||| |||||||||||||||
Sbjct: 187219 atactagacacacacacaaacaca 187196
to top
>gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, complete sequence
          Length = 195652

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     agatacacacacaaacacat 34
              ||||||||||||||||||||
Sbjct: 128809 agatacacacacaaacacat 128790
to top
>gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, complete sequence
          Length = 228174

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 38720 tagatacacacacaaacaca 38739
to top
>gb|AC150685.2| Mus musculus BAC clone RP23-239C12 from 19, complete sequence
          Length = 194627

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    tagatacacacacaaacaca 33
             ||||||||||||||||||||
Sbjct: 24685 tagatacacacacaaacaca 24666
to top
>emb|AL137818.4|CNS01DWP Human chromosome 14 DNA sequence BAC R-102C24 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 179714

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 14   tagatacacacacaaacaca 33
            ||||||||||||||||||||
Sbjct: 4871 tagatacacacacaaacaca 4852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,300,243
Number of Sequences: 3902068
Number of extensions: 2300243
Number of successful extensions: 145602
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145366
Number of HSP's gapped (non-prelim): 235
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top