ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26i12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MPRI_BOVIN (P08169) Cation-independent mannose-6-phosphate recep... 30 3.5
2PLXB3_HUMAN (Q9ULL4) Plexin-B3 precursor 30 4.6
3PEVR2_MOUSE (Q9D8F3) Porcine endogenous retrovirus A receptor 2 ... 30 4.6
4NUOM_MYCTU (O53307) NADH-quinone oxidoreductase chain M (EC 1.6.... 29 6.0
5CYB_LACMU (P92853) Cytochrome b (Fragment) 29 7.8

>MPRI_BOVIN (P08169) Cation-independent mannose-6-phosphate receptor precursor|
            (CI Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like
            growth factor 2 receptor) (Insulin-like growth factor II
            receptor) (IGF-II receptor) (300 kDa mannose 6-phosphate
            receptor)
          Length = 2499

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -1

Query: 335  CVGITGTIFPPDPQATQLRSCKVERRRCG---QALMINQNTLYESSALAVKQLSSVQFSS 165
            C  +T  + P   ++  + SC+ +R   G    A + NQ   YE+  L +          
Sbjct: 1271 CGELTSGVCPTSDKSKVISSCQEKRGPQGFQKVAGLFNQKLTYENGVLKMNYTGGDTCHK 1330

Query: 164  ILHSSSLVYMYCALSSFLP 108
            +   S+ ++ YC  S+  P
Sbjct: 1331 VYQRSTTIFFYCDRSTQAP 1349



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>PLXB3_HUMAN (Q9ULL4) Plexin-B3 precursor|
          Length = 1909

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 46  LGQSXHQSSDACTTASGRGQKGRKEERAQYMYT 144
           LG S  Q+   C TA GRG  G +E   +Y  T
Sbjct: 322 LGASMEQARRLCYTAGGRGPSGAEEATVEYGVT 354



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>PEVR2_MOUSE (Q9D8F3) Porcine endogenous retrovirus A receptor 2 homolog|
           precursor (PERV-A receptor 2 homolog) (Protein GPR172B)
          Length = 450

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = -1

Query: 326 ITGTIFPPDPQATQLRSCKVERRRCGQALMINQNTLYESSALAVKQLSSVQFSSILHSSS 147
           + G +  PDP+A QL S    R  C   L+   N L      AV+  S + +  + +  +
Sbjct: 262 VAGIVSSPDPKAHQLFS---SRSACLLGLLAITNALTNGVLPAVQSFSCLPYGRLAYHLA 318

Query: 146 LVYMYCA--LSSFLPFCPL 96
           +V   CA  L+ FL    L
Sbjct: 319 VVLGSCANPLACFLAMAVL 337



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>NUOM_MYCTU (O53307) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain M) (NDH-1, chain M)
          Length = 553

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 23/89 (25%), Positives = 34/89 (38%)
 Frame = -1

Query: 380 PSLCLVGWNCSSDLPCVGITGTIFPPDPQATQLRSCKVERRRCGQALMINQNTLYESSAL 201
           P L + GWN ++D   +      +P  P   +LRS   ER R G    +      ES  L
Sbjct: 97  PLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGGERTR-GVHAYVALTLAIESMVL 155

Query: 200 AVKQLSSVQFSSILHSSSLVYMYCALSSF 114
                  V    +   + L+ MY  +  F
Sbjct: 156 MSVIALDVLLFYVFFEAMLIPMYFLIGGF 184



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>CYB_LACMU (P92853) Cytochrome b (Fragment)|
          Length = 214

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 448 KPNVQERELALFNIVCDELLLGIPRFAWW-VGIAAVICLVLASLAPYFLPIHKLLN 284
           K  + +  L LFN+    L +G     WW  G   +ICL++ +   +FL IH   N
Sbjct: 5   KNMLHQHMLTLFNL----LPVGSNISTWWNFGSMLLICLMIQTTTGFFLAIHYTAN 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,888,685
Number of Sequences: 219361
Number of extensions: 1294244
Number of successful extensions: 3753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3752
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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