Clone Name | rbasd26i12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MPRI_BOVIN (P08169) Cation-independent mannose-6-phosphate recep... | 30 | 3.5 | 2 | PLXB3_HUMAN (Q9ULL4) Plexin-B3 precursor | 30 | 4.6 | 3 | PEVR2_MOUSE (Q9D8F3) Porcine endogenous retrovirus A receptor 2 ... | 30 | 4.6 | 4 | NUOM_MYCTU (O53307) NADH-quinone oxidoreductase chain M (EC 1.6.... | 29 | 6.0 | 5 | CYB_LACMU (P92853) Cytochrome b (Fragment) | 29 | 7.8 |
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>MPRI_BOVIN (P08169) Cation-independent mannose-6-phosphate receptor precursor| (CI Man-6-P receptor) (CI-MPR) (M6PR) (Insulin-like growth factor 2 receptor) (Insulin-like growth factor II receptor) (IGF-II receptor) (300 kDa mannose 6-phosphate receptor) Length = 2499 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Frame = -1 Query: 335 CVGITGTIFPPDPQATQLRSCKVERRRCG---QALMINQNTLYESSALAVKQLSSVQFSS 165 C +T + P ++ + SC+ +R G A + NQ YE+ L + Sbjct: 1271 CGELTSGVCPTSDKSKVISSCQEKRGPQGFQKVAGLFNQKLTYENGVLKMNYTGGDTCHK 1330 Query: 164 ILHSSSLVYMYCALSSFLP 108 + S+ ++ YC S+ P Sbjct: 1331 VYQRSTTIFFYCDRSTQAP 1349
>PLXB3_HUMAN (Q9ULL4) Plexin-B3 precursor| Length = 1909 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 46 LGQSXHQSSDACTTASGRGQKGRKEERAQYMYT 144 LG S Q+ C TA GRG G +E +Y T Sbjct: 322 LGASMEQARRLCYTAGGRGPSGAEEATVEYGVT 354
>PEVR2_MOUSE (Q9D8F3) Porcine endogenous retrovirus A receptor 2 homolog| precursor (PERV-A receptor 2 homolog) (Protein GPR172B) Length = 450 Score = 29.6 bits (65), Expect = 4.6 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = -1 Query: 326 ITGTIFPPDPQATQLRSCKVERRRCGQALMINQNTLYESSALAVKQLSSVQFSSILHSSS 147 + G + PDP+A QL S R C L+ N L AV+ S + + + + + Sbjct: 262 VAGIVSSPDPKAHQLFS---SRSACLLGLLAITNALTNGVLPAVQSFSCLPYGRLAYHLA 318 Query: 146 LVYMYCA--LSSFLPFCPL 96 +V CA L+ FL L Sbjct: 319 VVLGSCANPLACFLAMAVL 337
>NUOM_MYCTU (O53307) NADH-quinone oxidoreductase chain M (EC 1.6.99.5) (NADH| dehydrogenase I, chain M) (NDH-1, chain M) Length = 553 Score = 29.3 bits (64), Expect = 6.0 Identities = 23/89 (25%), Positives = 34/89 (38%) Frame = -1 Query: 380 PSLCLVGWNCSSDLPCVGITGTIFPPDPQATQLRSCKVERRRCGQALMINQNTLYESSAL 201 P L + GWN ++D + +P P +LRS ER R G + ES L Sbjct: 97 PLLLVAGWNDATDADDLSPASGRYPQRPAPPRLRSSGGERTR-GVHAYVALTLAIESMVL 155 Query: 200 AVKQLSSVQFSSILHSSSLVYMYCALSSF 114 V + + L+ MY + F Sbjct: 156 MSVIALDVLLFYVFFEAMLIPMYFLIGGF 184
>CYB_LACMU (P92853) Cytochrome b (Fragment)| Length = 214 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -2 Query: 448 KPNVQERELALFNIVCDELLLGIPRFAWW-VGIAAVICLVLASLAPYFLPIHKLLN 284 K + + L LFN+ L +G WW G +ICL++ + +FL IH N Sbjct: 5 KNMLHQHMLTLFNL----LPVGSNISTWWNFGSMLLICLMIQTTTGFFLAIHYTAN 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,888,685 Number of Sequences: 219361 Number of extensions: 1294244 Number of successful extensions: 3753 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3639 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3752 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)