ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26i11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CLC4F_RAT (P10716) C-type lectin domain family 4 member F (C-typ... 28 8.6

>CLC4F_RAT (P10716) C-type lectin domain family 4 member F (C-type lectin|
           superfamily member 13) (C-type lectin 13) (Kupffer cell
           receptor)
          Length = 550

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 276 HTSAMAILVHAIIYFALIALFVIVI 202
           H  A+  LV   ++F+L+ALFV+V+
Sbjct: 42  HVQAIVALVVVTVFFSLLALFVVVL 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,938,007
Number of Sequences: 219361
Number of extensions: 274889
Number of successful extensions: 1007
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top