ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26i09 |
|---|---|
| Clone Library Name | barley_pub |
>RARA_MOUSE (P11416) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 32.0 bits (71), Expect = 0.90 Identities = 19/69 (27%), Positives = 24/69 (34%) Frame = -1 Query: 381 HQQQARFXLSPWTXXXXXXXXXXAEALPDPCRPPPTHRLHLLKIGKRGCQDXRIPYGYSL 202 HQ +P E +P P PPP R++ CQD Y Y + Sbjct: 46 HQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGV 102 Query: 201 QFCSGCHCF 175 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_HUMAN (P10276) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 32.0 bits (71), Expect = 0.90 Identities = 19/69 (27%), Positives = 24/69 (34%) Frame = -1 Query: 381 HQQQARFXLSPWTXXXXXXXXXXAEALPDPCRPPPTHRLHLLKIGKRGCQDXRIPYGYSL 202 HQ +P E +P P PPP R++ CQD Y Y + Sbjct: 46 HQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGV 102 Query: 201 QFCSGCHCF 175 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_CANFA (Q5FBR4) Retinoic acid receptor alpha (RAR-alpha)| Length = 462 Score = 32.0 bits (71), Expect = 0.90 Identities = 19/69 (27%), Positives = 24/69 (34%) Frame = -1 Query: 381 HQQQARFXLSPWTXXXXXXXXXXAEALPDPCRPPPTHRLHLLKIGKRGCQDXRIPYGYSL 202 HQ +P E +P P PPP R++ CQD Y Y + Sbjct: 46 HQLPVSGYSTPSPATIETQSSSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGV 102 Query: 201 QFCSGCHCF 175 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_CHICK (Q90966) Retinoic acid receptor alpha (RAR-alpha)| Length = 460 Score = 32.0 bits (71), Expect = 0.90 Identities = 19/69 (27%), Positives = 24/69 (34%) Frame = -1 Query: 381 HQQQARFXLSPWTXXXXXXXXXXAEALPDPCRPPPTHRLHLLKIGKRGCQDXRIPYGYSL 202 HQ +P E +P P PPP R++ CQD Y Y + Sbjct: 46 HQLPVSGYSTPSPATVETQSTSSEEIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGV 102 Query: 201 QFCSGCHCF 175 C GC F Sbjct: 103 SACEGCKGF 111
>RARA_XENLA (P51126) Retinoic acid receptor alpha (RAR-alpha)| Length = 458 Score = 32.0 bits (71), Expect = 0.90 Identities = 19/69 (27%), Positives = 24/69 (34%) Frame = -1 Query: 381 HQQQARFXLSPWTXXXXXXXXXXAEALPDPCRPPPTHRLHLLKIGKRGCQDXRIPYGYSL 202 HQ +P E +P P PPP R++ CQD Y Y + Sbjct: 46 HQPPLSGYSTPSPATIETQSTSSEEIVPSPPTPPPLPRIYKPCFV---CQDKSSGYHYGV 102 Query: 201 QFCSGCHCF 175 C GC F Sbjct: 103 SACEGCKGF 111
>V29K_TRVTC (P05074) 29 kDa protein (Fragment)| Length = 130 Score = 31.2 bits (69), Expect = 1.5 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -1 Query: 264 HLLKIGKRGCQDXRIPYGYSLQFCSGCHCFSGAVLGVEVITQGARRANDFETNPSEYALG 85 ++L + K GC +P C G + FS V + V T RR N E N S+Y G Sbjct: 21 NVLDVWKVGCISEGVPV------CDGTYPFSIEVSLIWVATDSTRRLNVEELNSSDYIEG 74 Query: 84 XVT 76 T Sbjct: 75 DFT 77
>V29K_TRVSY (P69473) 29 kDa protein| Length = 252 Score = 31.2 bits (69), Expect = 1.5 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -1 Query: 264 HLLKIGKRGCQDXRIPYGYSLQFCSGCHCFSGAVLGVEVITQGARRANDFETNPSEYALG 85 ++L + K GC +P C G + FS V + V T RR N E N S+Y G Sbjct: 143 NVLDVWKVGCISEGVPV------CDGTYPFSIEVSLIWVATDSTRRLNVEELNSSDYIEG 196 Query: 84 XVT 76 T Sbjct: 197 DFT 199
>V29K_TRVPS (P69472) 29 kDa protein| Length = 252 Score = 31.2 bits (69), Expect = 1.5 Identities = 21/63 (33%), Positives = 28/63 (44%) Frame = -1 Query: 264 HLLKIGKRGCQDXRIPYGYSLQFCSGCHCFSGAVLGVEVITQGARRANDFETNPSEYALG 85 ++L + K GC +P C G + FS V + V T RR N E N S+Y G Sbjct: 143 NVLDVWKVGCISEGVPV------CDGTYPFSIEVSLIWVATDSTRRLNVEELNSSDYIEG 196 Query: 84 XVT 76 T Sbjct: 197 DFT 199
>RARA_NOTVI (P18514) Retinoic acid receptor alpha (RAR-alpha)| Length = 458 Score = 30.8 bits (68), Expect = 2.0 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -1 Query: 309 EALPDPCRPPPTHRLHLLKIGKRGCQDXRIPYGYSLQFCSGCHCF 175 E +P P PPP R++ CQD Y Y + C GC F Sbjct: 69 EIVPSPPSPPPLPRIYKPCFV---CQDKSSGYHYGVSACEGCKGF 110
>RARA_FUGRU (Q9W5Z3) Retinoic acid receptor alpha (RAR-alpha)| Length = 447 Score = 30.4 bits (67), Expect = 2.6 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -1 Query: 309 EALPDPCRPPPTHRLHLLKIGKRGCQDXRIPYGYSLQFCSGCHCF 175 E +P P PPP R++ CQD Y Y + C GC F Sbjct: 62 EIVPSPPSPPPPPRVYKPCFV---CQDKSSGYHYGVSACEGCKGF 103
>RNF38_HUMAN (Q9H0F5) RING finger protein 38| Length = 515 Score = 28.9 bits (63), Expect = 7.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 421 PPVCPSRLRFKPLPPAAGPVXTFALD 344 P + P L P+PPA GP +F LD Sbjct: 386 PSLLPYVLSMLPVPPAVGPTFSFELD 411
>VE2_HPV04 (Q07849) Regulatory protein E2| Length = 402 Score = 28.9 bits (63), Expect = 7.6 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +3 Query: 351 AKVXTGPAAGGSGLKRRR-EGQTGGRAEXVPVEVEKGSGRRXGE 479 A T P G L+RRR EG++G + P + +G GR GE Sbjct: 242 ATSTTSPETEGVRLRRRRREGKSGPGSGETPRKRRRGGGRGGGE 285
>RNF38_MOUSE (Q8BI21) RING finger protein 38| Length = 518 Score = 28.9 bits (63), Expect = 7.6 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 421 PPVCPSRLRFKPLPPAAGPVXTFALD 344 P + P L P+PPA GP +F LD Sbjct: 389 PSLLPYVLSMLPVPPAVGPTFSFELD 414 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,995,553 Number of Sequences: 219361 Number of extensions: 773257 Number of successful extensions: 2373 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2314 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2364 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
