Clone Name | rbasd26i09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK107724.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E12, full insert sequence Length = 794 Score = 139 bits (70), Expect = 1e-29 Identities = 147/173 (84%) Strand = Plus / Minus Query: 117 aatcgttggcccttcttgccccctgagttattacttccaccccaagcactgccccagaaa 176 |||||||||| ||| |||| ||||| || ||| | ||| |||||||||| ||||||||| Sbjct: 433 aatcgttggcgctttgtgcctcctgaattgttattcccatcccaagcacttccccagaaa 374 Query: 177 aacagtgacatccagaacagaactgcaaagaatatccgtaaggtatcctgtnatcttgac 236 ||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct: 373 aacagtgccatccagaacagaactgcaaagaatatgcgtatcctatcctgtaatcttgat 314 Query: 237 aacctctcttgccaatcttgaggagatggaggcggtgggtcggaggagggcgg 289 ||||||||||||||| | || ||||| | ||||| || || ||||||||||| Sbjct: 313 aacctctcttgccaaccgtggggagaccgtggcggcggctcagaggagggcgg 261
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 135 bits (68), Expect = 1e-28 Identities = 118/135 (87%) Strand = Plus / Minus Query: 117 aatcgttggcccttcttgccccctgagttattacttccaccccaagcactgccccagaaa 176 |||||||||| ||| |||| ||||| || ||| | ||| |||||||||| ||||||||| Sbjct: 16644910 aatcgttggcgctttgtgcctcctgaattgttattcccatcccaagcacttccccagaaa 16644851 Query: 177 aacagtgacatccagaacagaactgcaaagaatatccgtaaggtatcctgtnatcttgac 236 ||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct: 16644850 aacagtgccatccagaacagaactgcaaagaatatgcgtatcctatcctgtaatcttgat 16644791 Query: 237 aacctctcttgccaa 251 ||||||||||||||| Sbjct: 16644790 aacctctcttgccaa 16644776
>dbj|AP004610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1109A06 Length = 171438 Score = 135 bits (68), Expect = 1e-28 Identities = 118/135 (87%) Strand = Plus / Minus Query: 117 aatcgttggcccttcttgccccctgagttattacttccaccccaagcactgccccagaaa 176 |||||||||| ||| |||| ||||| || ||| | ||| |||||||||| ||||||||| Sbjct: 74859 aatcgttggcgctttgtgcctcctgaattgttattcccatcccaagcacttccccagaaa 74800 Query: 177 aacagtgacatccagaacagaactgcaaagaatatccgtaaggtatcctgtnatcttgac 236 ||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||| Sbjct: 74799 aacagtgccatccagaacagaactgcaaagaatatgcgtatcctatcctgtaatcttgat 74740 Query: 237 aacctctcttgccaa 251 ||||||||||||||| Sbjct: 74739 aacctctcttgccaa 74725
>gb|AC124397.5| Mus musculus BAC clone RP24-348J16 from chromosome 13, complete sequence Length = 191713 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 442 tggaggtggagaaggggagtggt 464 ||||||||||||||||||||||| Sbjct: 166153 tggaggtggagaaggggagtggt 166131
>gb|AC122881.4| Mus musculus BAC clone RP23-79J21 from 13, complete sequence Length = 221931 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 442 tggaggtggagaaggggagtggt 464 ||||||||||||||||||||||| Sbjct: 201493 tggaggtggagaaggggagtggt 201515
>gb|AC093087.3| Homo sapiens BAC clone RP11-785H2 from 7, complete sequence Length = 123039 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 435 gtgccggtggaggtggagaaggggag 460 |||| ||||||||||||||||||||| Sbjct: 2818 gtgctggtggaggtggagaaggggag 2793
>gb|AC113292.6| Mus musculus chromosome 15, clone RP23-418M3, complete sequence Length = 218109 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 449 ggagaaggggagtggtaggaga 470 |||||||||||||||||||||| Sbjct: 198298 ggagaaggggagtggtaggaga 198277
>gb|AC144780.1| Pan troglodytes BAC clone RP43-2J12 from 7, complete sequence Length = 191540 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 435 gtgccggtggaggtggagaaggggag 460 |||| ||||||||||||||||||||| Sbjct: 94288 gtgctggtggaggtggagaaggggag 94313
>gb|BC085465.1| Danio rerio zgc:101886, mRNA (cDNA clone MGC:101886 IMAGE:7254092), complete cds Length = 2287 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 tcttgaggagatggaggcggt 272 ||||||||||||||||||||| Sbjct: 811 tcttgaggagatggaggcggt 791
>ref|XM_474637.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1674 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 366 gggcctgctgctggtggtagt 386 ||||||||||||||||||||| Sbjct: 410 gggcctgctgctggtggtagt 390
>gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074L01, complete sequence Length = 115339 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 cggtggaggtggagaagggga 459 ||||||||||||||||||||| Sbjct: 96633 cggtggaggtggagaagggga 96653
>gb|AY099362.1| Drosophila melanogaster eyegone (eyg) mRNA, complete cds Length = 2654 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 ctgctgctggtggtagtggct 390 ||||||||||||||||||||| Sbjct: 1939 ctgctgctggtggtagtggct 1919
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 gggcctgctgctggtggtagt 386 ||||||||||||||||||||| Sbjct: 54210 gggcctgctgctggtggtagt 54230
>gb|AC093438.2| Drosophila melanogaster 3L BAC RP98-26C20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167344 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 ctgctgctggtggtagtggct 390 ||||||||||||||||||||| Sbjct: 141628 ctgctgctggtggtagtggct 141648
>gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence Length = 184931 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 ggacagactggtgggagggcggagg 432 ||||||||||||||||||| ||||| Sbjct: 150705 ggacagactggtgggagggtggagg 150729
>gb|AC182463.3| Pan troglodytes BAC clone CH251-511B8 from chromosome 16, complete sequence Length = 194406 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 ggacagactggtgggagggcggagg 432 ||||||||||||||||||| ||||| Sbjct: 174124 ggacagactggtgggagggtggagg 174148
>ref|NM_079318.2| Drosophila melanogaster eyegone CG10488-RA, transcript variant A (eyg), mRNA Length = 2653 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 ctgctgctggtggtagtggct 390 ||||||||||||||||||||| Sbjct: 1939 ctgctgctggtggtagtggct 1919
>ref|NM_001014582.1| Drosophila melanogaster eyegone CG10488-RB, transcript variant B (eyg), mRNA Length = 2586 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 ctgctgctggtggtagtggct 390 ||||||||||||||||||||| Sbjct: 1872 ctgctgctggtggtagtggct 1852
>gb|AC091223.2| Drosophila melanogaster 3L BAC RP98-48G6 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170988 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 ctgctgctggtggtagtggct 390 ||||||||||||||||||||| Sbjct: 32514 ctgctgctggtggtagtggct 32534
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 gggcctgctgctggtggtagt 386 ||||||||||||||||||||| Sbjct: 5077937 gggcctgctgctggtggtagt 5077957
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 cggtggaggtggagaagggga 459 ||||||||||||||||||||| Sbjct: 1098351 cggtggaggtggagaagggga 1098371
>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence Length = 216264 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 408 ggacagactggtgggagggcggagg 432 ||||||||||||||||||| ||||| Sbjct: 82671 ggacagactggtgggagggtggagg 82695
>ref|NM_001007374.1| Danio rerio zgc:101886 (zgc:101886), mRNA Length = 2287 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 tcttgaggagatggaggcggt 272 ||||||||||||||||||||| Sbjct: 811 tcttgaggagatggaggcggt 791
>gb|BT021470.1| Drosophila melanogaster AT09010 full insert cDNA Length = 2331 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 ctgctgctggtggtagtggct 390 ||||||||||||||||||||| Sbjct: 1551 ctgctgctggtggtagtggct 1531
>gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44 of 83 of the complete sequence Length = 265524 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 ctgctgctggtggtagtggct 390 ||||||||||||||||||||| Sbjct: 152666 ctgctgctggtggtagtggct 152686
>gb|AF091739.1|AF091739 Drosophila melanogaster Eyegone (eyg) mRNA, complete cds Length = 2655 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 ctgctgctggtggtagtggct 390 ||||||||||||||||||||| Sbjct: 1939 ctgctgctggtggtagtggct 1919
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 cggtggaggtggagaagggga 459 ||||||||||||||||||||| Sbjct: 1096072 cggtggaggtggagaagggga 1096092
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 424 gggcggaggangtgccggtggag 446 |||||||||| |||||||||||| Sbjct: 2253866 gggcggaggaagtgccggtggag 2253888
>emb|CT009583.3| Pan troglodytes chromosome X BAC RP43-045P06, complete sequence Length = 175371 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cccaagcactgccccagaaa 176 |||||||||||||||||||| Sbjct: 40762 cccaagcactgccccagaaa 40781
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 aaaccgggcctgctgctggt 380 |||||||||||||||||||| Sbjct: 3296123 aaaccgggcctgctgctggt 3296104
>emb|AL451107.6| Human DNA sequence from clone RP11-14C22 on chromosome 10 Contains the gene for a novel protein similar to lysozyme C-1 (1 4-beta-N-acylmuramidase C EC 3.2.1.17) (MGC33408), three novel genes and a supervillin pseudogene (SVIL), complete sequence Length = 172779 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 437 gccggtggaggtggagaaggggag 460 ||||| |||||||||||||||||| Sbjct: 8975 gccggaggaggtggagaaggggag 8952
>gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete sequence Length = 38838 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ggcggcaagggtccggcagc 304 |||||||||||||||||||| Sbjct: 16565 ggcggcaagggtccggcagc 16584
>gb|AC093193.11| Homo sapiens Xp BAC RP11-607K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 83001 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 cccaagcactgccccagaaa 176 |||||||||||||||||||| Sbjct: 41348 cccaagcactgccccagaaa 41329
>gb|AC159710.9| Mus musculus 10 BAC RP24-325N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 204302 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ctgctgctggtggtagtggc 389 |||||||||||||||||||| Sbjct: 101045 ctgctgctggtggtagtggc 101026
>gb|AC011520.3|AC011520 Homo sapiens chromosome 19 clone LLNLF-205H1, complete sequence Length = 42718 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaggggagtggtaggaga 470 |||||||||||||||||||| Sbjct: 4917 agaaggggagtggtaggaga 4898
>gb|AF013262.1|AF013262 Mus musculus lumican (Ldc) gene, complete cds Length = 7064 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 ctgctgctggtggtagtggc 389 |||||||||||||||||||| Sbjct: 619 ctgctgctggtggtagtggc 600
>gb|AC153862.8| Mus musculus 10 BAC RP23-353K11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 223830 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 ggtggaggtggagaagggga 459 |||||||||||||||||||| Sbjct: 143414 ggtggaggtggagaagggga 143433
>gb|AC004780.1|AC004780 Homo sapiens chromosome 19, cosmid F17127, complete sequence Length = 37218 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 agaaggggagtggtaggaga 470 |||||||||||||||||||| Sbjct: 18530 agaaggggagtggtaggaga 18511 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,388,748 Number of Sequences: 3902068 Number of extensions: 3388748 Number of successful extensions: 79162 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78870 Number of HSP's gapped (non-prelim): 292 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)