ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26i05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
2dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
3dbj|AK100158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
4dbj|AK073114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
5dbj|AK071459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
6emb|AL583862.35| Human DNA sequence from clone RP11-506B15 on ch... 46 0.12
7gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.48
8gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.48
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
11dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
12emb|AL845360.10| Mouse DNA sequence from clone RP23-421L7 on chr... 44 0.48
13dbj|AK120954.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
14dbj|AK119403.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.48
16gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.48
17emb|AL928783.4|CNS08CCD Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.48
18gb|AC132570.3| Mus musculus BAC clone RP24-531D1 from chromosome... 42 1.9
19gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 1... 42 1.9
20emb|BX883044.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.9
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
22dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
23dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
24emb|X97570.1|ZMDEK34 Z.mays dek34 gene 42 1.9
25dbj|AK110449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
26gb|AY110442.1| Zea mays CL1457_1 mRNA sequence 42 1.9
27ref|NM_120304.2| Arabidopsis thaliana ATEXPA9 (ARABIDOPSIS THALI... 40 7.5
28gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, co... 40 7.5
29emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chro... 40 7.5
30gb|AY245777.1| Monosiga brevicollis MBTK3 mRNA, partial cds 40 7.5
31emb|AL162874.1|ATT1E22 Arabidopsis thaliana DNA chromosome 5, BA... 40 7.5
32emb|AL157918.1|SPBC21C3 S.pombe chromosome II cosmid c21C3 40 7.5
33gb|AC108169.5| Homo sapiens BAC clone RP11-1236J3 from 4, comple... 40 7.5
34gb|BC102429.1| Bos taurus similar to Adipocyte plasma membrane-a... 40 7.5
35gb|AY054586.1| Arabidopsis thaliana expansin precursor-like prot... 40 7.5
36ref|NM_001022511.1| Schizosaccharomyces pombe 972h- hypothetical... 40 7.5
37gb|AY086085.1| Arabidopsis thaliana clone 21205 mRNA, complete s... 40 7.5
38dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
39dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
40gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, co... 40 7.5
41dbj|AK067472.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
42emb|AL773557.21| Mouse DNA sequence from clone RP23-391F9 on chr... 40 7.5
43gb|DQ323065.1| Triticum aestivum cadmium tolerance factor mRNA, ... 40 7.5
44ref|NM_001035413.1| Bos taurus similar to Adipocyte plasma membr... 40 7.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  264 bits (133), Expect = 3e-67
 Identities = 250/289 (86%)
 Strand = Plus / Minus

                                                                            
Query: 217      cccttctccttcactaaccttgccacttcgtgaaatgacaacaagacatggatgccgatg 276
                |||||||| |||||||||  ||| || || | |||||||| ||| ||||| ||| |||||
Sbjct: 10869981 cccttctctttcactaacaatgcgacctcatcaaatgacagcaatacatgaatgacgatg 10869922

                                                                            
Query: 277      tagatgatcacggcaatgacgagtgcaaaaatgtacacagatgtcttcaacttcctgcag 336
                ||||| | |||||| ||||| ||||||||||||||  |||||||||| ||||||||||||
Sbjct: 10869921 tagataaacacggcgatgacaagtgcaaaaatgtatgcagatgtcttgaacttcctgcag 10869862

                                                                            
Query: 337      ctgcccgcggcatatgcccctagtaaaccaagcaatcccaataccattgccgttttcata 396
                ||||| || ||||||||||| || | |||||||||  | ||||||||||| || ||||| 
Sbjct: 10869861 ctgccggctgcatatgccccaaggagaccaagcaagtctaataccattgctgtcttcatg 10869802

                                                                            
Query: 397      acaaggagagatctctggtacttgcttattgtgttgttcagtaggaggctgaccatggcc 456
                 ||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 10869801 gcaaggagtgatctcttgtacttgcttattgtgttgttcagaaggaggatgaccatgacc 10869742

                                                                 
Query: 457      attgaggccatgaatgctgtggcgttgcagtagaagaataccttgtacc 505
                 ||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 10869741 gttgaggccatgaatgctgttgcattgcaatagaagaataccttgtacc 10869693



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 480      gttgcagtagaagaataccttgtacc 505
                |||||||||||||||| |||||||||
Sbjct: 10657310 gttgcagtagaagaatgccttgtacc 10657335



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 463      gccatgaatgctgtggcgttgcagtagaagaat 495
                |||||||| ||||| || |||||||||||||||
Sbjct: 10624622 gccatgaaggctgttgcattgcagtagaagaat 10624654



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 478      gcgttgcagtagaagaataccttgtaccg 506
                ||||||||||||||||| ||| |||||||
Sbjct: 10601821 gcgttgcagtagaagaacaccatgtaccg 10601793



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 480      gttgcagtagaagaataccttgta 503
                ||||||||| ||||||||||||||
Sbjct: 10776582 gttgcagtaaaagaataccttgta 10776559



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 475      gtggcgttgcagtagaagaa 494
                ||||||||||||||||||||
Sbjct: 10658513 gtggcgttgcagtagaagaa 10658532



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 481      ttgcagtagaagaataccttgtaccgtg 508
                |||| ||||||||| |||||||||||||
Sbjct: 10650983 ttgctgtagaagaacaccttgtaccgtg 10651010



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 475      gtggcgttgcagtagaagaa 494
                ||||||||||||||||||||
Sbjct: 10599894 gtggcgttgcagtagaagaa 10599875



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 475      gtggcgttgcagtagaagaa 494
                ||||||||||||||||||||
Sbjct: 10599339 gtggcgttgcagtagaagaa 10599320



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 265     tggatgccgatgtagatgat 284
               ||||||||||||||||||||
Sbjct: 5934986 tggatgccgatgtagatgat 5934967
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>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0055N24
          Length = 142702

 Score =  264 bits (133), Expect = 3e-67
 Identities = 250/289 (86%)
 Strand = Plus / Minus

                                                                         
Query: 217   cccttctccttcactaaccttgccacttcgtgaaatgacaacaagacatggatgccgatg 276
             |||||||| |||||||||  ||| || || | |||||||| ||| ||||| ||| |||||
Sbjct: 96347 cccttctctttcactaacaatgcgacctcatcaaatgacagcaatacatgaatgacgatg 96288

                                                                         
Query: 277   tagatgatcacggcaatgacgagtgcaaaaatgtacacagatgtcttcaacttcctgcag 336
             ||||| | |||||| ||||| ||||||||||||||  |||||||||| ||||||||||||
Sbjct: 96287 tagataaacacggcgatgacaagtgcaaaaatgtatgcagatgtcttgaacttcctgcag 96228

                                                                         
Query: 337   ctgcccgcggcatatgcccctagtaaaccaagcaatcccaataccattgccgttttcata 396
             ||||| || ||||||||||| || | |||||||||  | ||||||||||| || ||||| 
Sbjct: 96227 ctgccggctgcatatgccccaaggagaccaagcaagtctaataccattgctgtcttcatg 96168

                                                                         
Query: 397   acaaggagagatctctggtacttgcttattgtgttgttcagtaggaggctgaccatggcc 456
              ||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 96167 gcaaggagtgatctcttgtacttgcttattgtgttgttcagaaggaggatgaccatgacc 96108

                                                              
Query: 457   attgaggccatgaatgctgtggcgttgcagtagaagaataccttgtacc 505
              ||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 96107 gttgaggccatgaatgctgttgcattgcaatagaagaataccttgtacc 96059



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 480  gttgcagtagaagaataccttgta 503
            ||||||||| ||||||||||||||
Sbjct: 2948 gttgcagtaaaagaataccttgta 2925
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>dbj|AK100158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019J01, full
            insert sequence
          Length = 3208

 Score =  264 bits (133), Expect = 3e-67
 Identities = 250/289 (86%)
 Strand = Plus / Minus

                                                                        
Query: 217  cccttctccttcactaaccttgccacttcgtgaaatgacaacaagacatggatgccgatg 276
            |||||||| |||||||||  ||| || || | |||||||| ||| ||||| ||| |||||
Sbjct: 2917 cccttctctttcactaacaatgcgacctcatcaaatgacagcaatacatgaatgacgatg 2858

                                                                        
Query: 277  tagatgatcacggcaatgacgagtgcaaaaatgtacacagatgtcttcaacttcctgcag 336
            ||||| | |||||| ||||| ||||||||||||||  |||||||||| ||||||||||||
Sbjct: 2857 tagataaacacggcgatgacaagtgcaaaaatgtatgcagatgtcttgaacttcctgcag 2798

                                                                        
Query: 337  ctgcccgcggcatatgcccctagtaaaccaagcaatcccaataccattgccgttttcata 396
            ||||| || ||||||||||| || | |||||||||  | ||||||||||| || ||||| 
Sbjct: 2797 ctgccggctgcatatgccccaaggagaccaagcaagtctaataccattgctgtcttcatg 2738

                                                                        
Query: 397  acaaggagagatctctggtacttgcttattgtgttgttcagtaggaggctgaccatggcc 456
             ||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 2737 gcaaggagtgatctcttgtacttgcttattgtgttgttcagaaggaggatgaccatgacc 2678

                                                             
Query: 457  attgaggccatgaatgctgtggcgttgcagtagaagaataccttgtacc 505
             ||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 2677 gttgaggccatgaatgctgttgcattgcaatagaagaataccttgtacc 2629
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>dbj|AK073114.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020F13, full
            insert sequence
          Length = 3190

 Score =  264 bits (133), Expect = 3e-67
 Identities = 250/289 (86%)
 Strand = Plus / Minus

                                                                        
Query: 217  cccttctccttcactaaccttgccacttcgtgaaatgacaacaagacatggatgccgatg 276
            |||||||| |||||||||  ||| || || | |||||||| ||| ||||| ||| |||||
Sbjct: 2915 cccttctctttcactaacaatgcgacctcatcaaatgacagcaatacatgaatgacgatg 2856

                                                                        
Query: 277  tagatgatcacggcaatgacgagtgcaaaaatgtacacagatgtcttcaacttcctgcag 336
            ||||| | |||||| ||||| ||||||||||||||  |||||||||| ||||||||||||
Sbjct: 2855 tagataaacacggcgatgacaagtgcaaaaatgtatgcagatgtcttgaacttcctgcag 2796

                                                                        
Query: 337  ctgcccgcggcatatgcccctagtaaaccaagcaatcccaataccattgccgttttcata 396
            ||||| || ||||||||||| || | |||||||||  | ||||||||||| || ||||| 
Sbjct: 2795 ctgccggctgcatatgccccaaggagaccaagcaagtctaataccattgctgtcttcatg 2736

                                                                        
Query: 397  acaaggagagatctctggtacttgcttattgtgttgttcagtaggaggctgaccatggcc 456
             ||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 2735 gcaaggagtgatctcttgtacttgcttattgtgttgttcagaaggaggatgaccatgacc 2676

                                                             
Query: 457  attgaggccatgaatgctgtggcgttgcagtagaagaataccttgtacc 505
             ||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 2675 gttgaggccatgaatgctgttgcattgcaatagaagaataccttgtacc 2627
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>dbj|AK071459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089M14, full
            insert sequence
          Length = 3577

 Score =  264 bits (133), Expect = 3e-67
 Identities = 250/289 (86%)
 Strand = Plus / Minus

                                                                        
Query: 217  cccttctccttcactaaccttgccacttcgtgaaatgacaacaagacatggatgccgatg 276
            |||||||| |||||||||  ||| || || | |||||||| ||| ||||| ||| |||||
Sbjct: 2917 cccttctctttcactaacaatgcgacctcatcaaatgacagcaatacatgaatgacgatg 2858

                                                                        
Query: 277  tagatgatcacggcaatgacgagtgcaaaaatgtacacagatgtcttcaacttcctgcag 336
            ||||| | |||||| ||||| ||||||||||||||  |||||||||| ||||||||||||
Sbjct: 2857 tagataaacacggcgatgacaagtgcaaaaatgtatgcagatgtcttgaacttcctgcag 2798

                                                                        
Query: 337  ctgcccgcggcatatgcccctagtaaaccaagcaatcccaataccattgccgttttcata 396
            ||||| || ||||||||||| || | |||||||||  | ||||||||||| || ||||| 
Sbjct: 2797 ctgccggctgcatatgccccaaggagaccaagcaagtctaataccattgctgtcttcatg 2738

                                                                        
Query: 397  acaaggagagatctctggtacttgcttattgtgttgttcagtaggaggctgaccatggcc 456
             ||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 2737 gcaaggagtgatctcttgtacttgcttattgtgttgttcagaaggaggatgaccatgacc 2678

                                                             
Query: 457  attgaggccatgaatgctgtggcgttgcagtagaagaataccttgtacc 505
             ||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 2677 gttgaggccatgaatgctgttgcattgcaatagaagaataccttgtacc 2629
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>emb|AL583862.35| Human DNA sequence from clone RP11-506B15 on chromosome 1 Contains the
             3' end of the gene for a novel protein (LOC149469), three
             novel genes (FLJ00408), gene KIAA0467 (FLJ45025,
             FLJ23425), the gene for a novel protein (HT036)
             (FLJ38925), the 5' end of the PTPRF gene for protein
             tyrosine phosphatase receptor type F and a CpG island,
             complete sequence
          Length = 167444

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 23    tggccttgagcaagcaataaagc 45
             |||||||||||||||||||||||
Sbjct: 97868 tggccttgagcaagcaataaagc 97846
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>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNAb0050G15, complete sequence
          Length = 126156

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 478   gcgttgcagtagaagaataccttgta 503
             |||||||||||||||||| |||||||
Sbjct: 68966 gcgttgcagtagaagaatgccttgta 68991
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>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0052C03, complete sequence
          Length = 157178

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 478  gcgttgcagtagaagaataccttgta 503
            |||||||||||||||||| |||||||
Sbjct: 2810 gcgttgcagtagaagaatgccttgta 2835
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 478     gcgttgcagtagaagaataccttgta 503
               ||||||||||||||||| ||||||||
Sbjct: 1987710 gcgttgcagtagaagaagaccttgta 1987685



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 319     gtcttcaacttcctgcagctgcccgcggc 347
               ||||||| ||||||||||||||| |||||
Sbjct: 1987329 gtcttcaccttcctgcagctgccggcggc 1987301
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 478     gcgttgcagtagaagaataccttgta 503
               |||||||||||||||||| |||||||
Sbjct: 6219532 gcgttgcagtagaagaatgccttgta 6219557



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 319     gtcttcaacttcctgcagctgcccgcggc 347
               ||||||| ||||||||||||||| |||||
Sbjct: 2041081 gtcttcaccttcctgcagctgccggcggc 2041053



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 475     gtggcgttgcagtagaagaataccttgta 503
               ||||||||||||||||||||  |||||||
Sbjct: 2039371 gtggcgttgcagtagaagaaggccttgta 2039343
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>dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0036B02
          Length = 168253

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 480   gttgcagtagaagaataccttgtacc 505
             |||||||||||||||| |||||||||
Sbjct: 10373 gttgcagtagaagaatgccttgtacc 10398



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 480    gttgcagtagaagaataccttgta 503
              ||||||||| ||||||||||||||
Sbjct: 129645 gttgcagtaaaagaataccttgta 129622



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   gtggcgttgcagtagaagaa 494
             ||||||||||||||||||||
Sbjct: 11576 gtggcgttgcagtagaagaa 11595



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 481  ttgcagtagaagaataccttgtaccgtg 508
            |||| ||||||||| |||||||||||||
Sbjct: 4046 ttgctgtagaagaacaccttgtaccgtg 4073
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>emb|AL845360.10| Mouse DNA sequence from clone RP23-421L7 on chromosome 2, complete
              sequence
          Length = 196651

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 210    ctctccccccttctccttcactaaccttgccact 243
              ||||||||||||||||||| ||  ||||||||||
Sbjct: 181823 ctctccccccttctccttccctgcccttgccact 181856
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>dbj|AK120954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E10, full
            insert sequence
          Length = 2917

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 319  gtcttcaacttcctgcagctgcccgcggca 348
            ||||||| ||||||||||||||| ||||||
Sbjct: 2040 gtcttcaccttcctgcagctgccggcggca 2011



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 475 gtggcgttgcagtagaagaataccttgta 503
           ||||||||||||||||||||  |||||||
Sbjct: 330 gtggcgttgcagtagaagaaggccttgta 302
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>dbj|AK119403.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-E08, full
            insert sequence
          Length = 2896

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 480  gttgcagtagaagaataccttgtacc 505
            |||||||||||||||| |||||||||
Sbjct: 1360 gttgcagtagaagaatgccttgtacc 1335



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 gtggcgttgcagtagaagaa 494
           ||||||||||||||||||||
Sbjct: 357 gtggcgttgcagtagaagaa 338
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 478     gcgttgcagtagaagaataccttgta 503
               |||||||||||||||||| |||||||
Sbjct: 6285999 gcgttgcagtagaagaatgccttgta 6286024



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 319     gtcttcaacttcctgcagctgcccgcggc 347
               ||||||| ||||||||||||||| |||||
Sbjct: 2048862 gtcttcaccttcctgcagctgccggcggc 2048834



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 475     gtggcgttgcagtagaagaataccttgta 503
               ||||||||||||||||||||  |||||||
Sbjct: 2047152 gtggcgttgcagtagaagaaggccttgta 2047124
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 478     gcgttgcagtagaagaataccttgta 503
               ||||||||||||||||| ||||||||
Sbjct: 1987661 gcgttgcagtagaagaagaccttgta 1987636



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 319     gtcttcaacttcctgcagctgcccgcggc 347
               ||||||| ||||||||||||||| |||||
Sbjct: 1987280 gtcttcaccttcctgcagctgccggcggc 1987252
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>emb|AL928783.4|CNS08CCD Oryza sativa chromosome 12, . BAC OSJNBa0028B04 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 158885

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 478   gcgttgcagtagaagaataccttgta 503
             ||||||||||||||||| ||||||||
Sbjct: 18603 gcgttgcagtagaagaagaccttgta 18578



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 319   gtcttcaacttcctgcagctgcccgcggc 347
             ||||||| ||||||||||||||| |||||
Sbjct: 18222 gtcttcaccttcctgcagctgccggcggc 18194
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>gb|AC132570.3| Mus musculus BAC clone RP24-531D1 from chromosome 5, complete sequence
          Length = 183005

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 128    aggactttgtcctggttccccatcagatg 156
              |||| |||||||| |||||||||||||||
Sbjct: 144065 aggattttgtccttgttccccatcagatg 144037
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>gb|AC123526.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06,
              complete sequence
          Length = 185449

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 319    gtcttcaacttcctgcagctgcccgcggc 347
              ||||||| ||||||||||||||| |||||
Sbjct: 112636 gtcttcaccttcctgcagctgccggcggc 112608



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 475    gtggcgttgcagtagaagaataccttgta 503
              ||||||||||||||||||||  |||||||
Sbjct: 110926 gtggcgttgcagtagaagaaggccttgta 110898
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>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 3/11
          Length = 340493

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 127    gaggactttgtcctggttccc 147
              |||||||||||||||||||||
Sbjct: 330818 gaggactttgtcctggttccc 330798
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                    
Query: 320     tcttcaacttcctgcagctgcccgcggcatatgcccc 356
               |||| ||||| ||||||||||| || |||||||||||
Sbjct: 9822214 tcttgaacttgctgcagctgccagctgcatatgcccc 9822250
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>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025D05
          Length = 145684

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 320   tcttcaacttcctgcagctgcccgcggcatatgcccc 356
             |||| ||||| ||||||||||| || |||||||||||
Sbjct: 86464 tcttgaacttgctgcagctgccagctgcatatgcccc 86500
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>dbj|AP005761.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1066D09
          Length = 183999

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 463    gccatgaatgctgtggcgttgcagtagaagaat 495
              |||||||| ||||| || |||||||||||||||
Sbjct: 161329 gccatgaaggctgttgcattgcagtagaagaat 161361



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 478    gcgttgcagtagaagaataccttgtaccg 506
              ||||||||||||||||| ||| |||||||
Sbjct: 138528 gcgttgcagtagaagaacaccatgtaccg 138500



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    gtggcgttgcagtagaagaa 494
              ||||||||||||||||||||
Sbjct: 136601 gtggcgttgcagtagaagaa 136582



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    gtggcgttgcagtagaagaa 494
              ||||||||||||||||||||
Sbjct: 136046 gtggcgttgcagtagaagaa 136027
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>emb|X97570.1|ZMDEK34 Z.mays dek34 gene
          Length = 5267

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 472  gctgtggcgttgcagtagaagaataccttgtaccgtg 508
            ||||| || ||||||||||||||||||| || |||||
Sbjct: 1621 gctgttgcattgcagtagaagaatacctcgtgccgtg 1585
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>dbj|AK110449.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-E04, full
            insert sequence
          Length = 2836

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 463  gccatgaatgctgtggcgttgcagtagaagaat 495
            |||||||| ||||| || |||||||||||||||
Sbjct: 1794 gccatgaaggctgttgcattgcagtagaagaat 1762
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>gb|AY110442.1| Zea mays CL1457_1 mRNA sequence
          Length = 4170

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 472 gctgtggcgttgcagtagaagaataccttgtaccgtg 508
           ||||| || ||||||||||||||||||| || |||||
Sbjct: 746 gctgttgcattgcagtagaagaatacctcgtgccgtg 710
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>ref|NM_120304.2| Arabidopsis thaliana ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)
            AT5G02260 (ATEXPA9) mRNA, complete cds
          Length = 1249

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 361  aaaccaagcaatcccaatac 380
            ||||||||||||||||||||
Sbjct: 1005 aaaccaagcaatcccaatac 986
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>gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, complete sequence
          Length = 152173

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 408   tctctggtacttgcttattgtgtt 431
             |||||||| |||||||||||||||
Sbjct: 55043 tctctggttcttgcttattgtgtt 55020
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>emb|AL389887.7| Human DNA sequence from clone RP11-54F22 on chromosome Xq21.1-21.31
             Contains the 5' end of the RPS6KA6 gene for ribosomal
             protein S6 kinase (90kD) polypeptide 6 and a CpG island,
             complete sequence
          Length = 143220

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 356   ctagtaaaccaagcaatcccaata 379
             ||||||||||||||||| ||||||
Sbjct: 97039 ctagtaaaccaagcaattccaata 97016
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>gb|AY245777.1| Monosiga brevicollis MBTK3 mRNA, partial cds
          Length = 1594

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 451 atggccattgaggccatgaa 470
           ||||||||||||||||||||
Sbjct: 735 atggccattgaggccatgaa 754
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>emb|AL162874.1|ATT1E22 Arabidopsis thaliana DNA chromosome 5, BAC clone T1E22 (ESSA project)
          Length = 96575

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 361   aaaccaagcaatcccaatac 380
             ||||||||||||||||||||
Sbjct: 13951 aaaccaagcaatcccaatac 13932
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>emb|AL157918.1|SPBC21C3 S.pombe chromosome II cosmid c21C3
          Length = 43610

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 320   tcttcaacttcctgcagctgcccg 343
             |||||||||||||| |||||||||
Sbjct: 24717 tcttcaacttcctggagctgcccg 24740
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>gb|AC108169.5| Homo sapiens BAC clone RP11-1236J3 from 4, complete sequence
          Length = 111806

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   caaaaatgtacacagatgtc 321
             ||||||||||||||||||||
Sbjct: 83952 caaaaatgtacacagatgtc 83933
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>gb|BC102429.1| Bos taurus similar to Adipocyte plasma membrane-associated protein
           (BSCv protein), mRNA (cDNA clone MGC:127374
           IMAGE:7951031), complete cds
          Length = 1527

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 124 gcagaggactttgtcctggt 143
           ||||||||||||||||||||
Sbjct: 828 gcagaggactttgtcctggt 847
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>gb|AY054586.1| Arabidopsis thaliana expansin precursor-like protein (At5g02260;
            T1E22_20) mRNA, complete cds
          Length = 1205

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 361  aaaccaagcaatcccaatac 380
            ||||||||||||||||||||
Sbjct: 1005 aaaccaagcaatcccaatac 986
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>ref|NM_001022511.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC21C3.11),
           partial mRNA
          Length = 1278

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 320 tcttcaacttcctgcagctgcccg 343
           |||||||||||||| |||||||||
Sbjct: 285 tcttcaacttcctggagctgcccg 308
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>gb|AY086085.1| Arabidopsis thaliana clone 21205 mRNA, complete sequence
          Length = 1230

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 361  aaaccaagcaatcccaatac 380
            ||||||||||||||||||||
Sbjct: 1005 aaaccaagcaatcccaatac 986
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>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0024N18
          Length = 128739

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   tggatgccgatgtagatgat 284
             ||||||||||||||||||||
Sbjct: 56638 tggatgccgatgtagatgat 56619
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>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0537F07
          Length = 147724

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    tggatgccgatgtagatgat 284
              ||||||||||||||||||||
Sbjct: 135761 tggatgccgatgtagatgat 135742
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>gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, complete sequence
          Length = 153799

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 408    tctctggtacttgcttattgtgtt 431
              |||||||| |||||||||||||||
Sbjct: 151008 tctctggttcttgcttattgtgtt 150985
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>dbj|AK067472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105J22, full
            insert sequence
          Length = 3124

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 481  ttgcagtagaagaataccttgtaccgtg 508
            |||| ||||||||| |||||||||||||
Sbjct: 1339 ttgctgtagaagaacaccttgtaccgtg 1312
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>emb|AL773557.21| Mouse DNA sequence from clone RP23-391F9 on chromosome 2, complete
             sequence
          Length = 215139

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   ctctccccccttctccttca 229
             ||||||||||||||||||||
Sbjct: 90253 ctctccccccttctccttca 90234
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>gb|DQ323065.1| Triticum aestivum cadmium tolerance factor mRNA, complete cds
          Length = 2998

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 475 gtggcgttgcagtagaagaa 494
           ||||||||||||||||||||
Sbjct: 337 gtggcgttgcagtagaagaa 318
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>ref|NM_001035413.1| Bos taurus similar to Adipocyte plasma membrane-associated protein
           (BSCv protein) (MGC127374), mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 124 gcagaggactttgtcctggt 143
           ||||||||||||||||||||
Sbjct: 828 gcagaggactttgtcctggt 847


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,864,407
Number of Sequences: 3902068
Number of extensions: 4864407
Number of successful extensions: 92501
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92086
Number of HSP's gapped (non-prelim): 415
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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