>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 40/41 (97%), Positives = 41/41 (100%)
 Frame = -1

Query: 244 KPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 122
           KPETGEVIGVFES+QPSDTDLGAKAPKDVKIQGVWYAQLES
Sbjct: 289 KPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329

>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 37/40 (92%), Positives = 40/40 (100%)
 Frame = -1

Query: 244 KPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           KPETGEVIGVFES+QPSDTDLG+KAPKDVKIQG+WYAQLE
Sbjct: 290 KPETGEVIGVFESIQPSDTDLGSKAPKDVKIQGIWYAQLE 329

>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 244 KPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           KPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct: 293 KPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332

>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 244 KPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           KPETGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLE
Sbjct: 290 KPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329

>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 36/40 (90%), Positives = 39/40 (97%)
 Frame = -1

Query: 241 PETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLES 122
           P+TGEVIGVFES+QPSDTDLGAK PKDVKIQG+WYAQLES
Sbjct: 294 PQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333

>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 37/40 (92%), Positives = 38/40 (95%)
 Frame = -1

Query: 244 KPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           KPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY QLE
Sbjct: 293 KPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQLE 332

>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 36/40 (90%), Positives = 38/40 (95%)
 Frame = -1

Query: 244 KPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           KPETGEVIGVFES+QPSDTDLGAK PKDVKIQGVWY Q+E
Sbjct: 292 KPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGVWYGQIE 331

>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 36/40 (90%), Positives = 39/40 (97%)
 Frame = -1

Query: 244 KPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           KPETGEVIGVF+S+QPSDTDLGAK PKDVKI+GVWYAQLE
Sbjct: 291 KPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLE 330

>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score = 78.2 bits (191), Expect = 5e-15
 Identities = 39/42 (92%), Positives = 40/42 (95%)
 Frame = -1

Query: 244 KPETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 119
           KPETGEVIGVFESVQPSDTDL  +APKDVKIQGVWYAQLESN
Sbjct: 286 KPETGEVIGVFESVQPSDTDL--EAPKDVKIQGVWYAQLESN 325

>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 291

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 29/39 (74%), Positives = 35/39 (89%)
 Frame = -1

Query: 241 PETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           P TGE+ GVFES+QPSDTDLGAK PKD+K+ G+WYAQL+
Sbjct: 253 PVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK 291

>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 338

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 29/37 (78%), Positives = 33/37 (89%)
 Frame = -1

Query: 238 ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 128
           ETGE+ GVFES+QPSDTDLGAK PKD+K  GVWYAQ+
Sbjct: 298 ETGEIAGVFESIQPSDTDLGAKVPKDIKTSGVWYAQI 334

>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 293

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = -1

Query: 235 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 128
           TGE+ GVFES+QPSDTDLGAK PKD+KI G+WY QL
Sbjct: 256 TGEIAGVFESIQPSDTDLGAKPPKDIKITGLWYGQL 291

>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 274

 Score = 57.8 bits (138), Expect = 7e-09
 Identities = 23/39 (58%), Positives = 34/39 (87%)
 Frame = -1

Query: 235 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLESN 119
           TGE+ G+FES QPSDTDLGAK P DVK++G++Y +++++
Sbjct: 235 TGEIAGIFESEQPSDTDLGAKEPLDVKVRGIFYGRVDTD 273

>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 273

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 24/37 (64%), Positives = 32/37 (86%)
 Frame = -1

Query: 235 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           +GE+ G FES QPSDTDLGA  PK+VKI+G++YA++E
Sbjct: 237 SGEIAGTFESEQPSDTDLGADEPKEVKIRGIFYARVE 273

>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 275

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 24/36 (66%), Positives = 32/36 (88%)
 Frame = -1

Query: 235 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQL 128
           TGE+ GVF+S QPSDTDLGAK P +VKI+G++YA++
Sbjct: 236 TGEIAGVFDSEQPSDTDLGAKEPVEVKIRGIFYARV 271

>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = -1

Query: 235 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           TGE+ G FES Q SD D+GA  P +VKIQGV+YA +E
Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270

>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = -1

Query: 235 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           TGE+ G FES Q SD D+GA  P +VKIQGV+YA +E
Sbjct: 234 TGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIE 270

>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 277

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 21/37 (56%), Positives = 28/37 (75%)
 Frame = -1

Query: 235 TGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWYAQLE 125
           TGEV GVF ++QPSDTD+G K   DVK+ G +Y ++E
Sbjct: 237 TGEVAGVFTAIQPSDTDMGGKEAVDVKLVGQFYGRIE 273

>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1)
          Length = 373

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 202 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 71
           QP    +     KD+K++G W +Q + N S  E K  ILI C  IR
Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336

>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC|
           1.3.1.38)
          Length = 373

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 202 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 77
           QP    +     KD+K++G W +Q + N S  E K LI   C
Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332

>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)|
          Length = 644

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +3

Query: 18  YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 197
           Y H     S ++ PP  P +  Q+M+  TS+     ++     PW  +S  A+ P + S 
Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS- 528

Query: 198 GCTLSKTPITSPVSGL 245
             + S +  +SP + +
Sbjct: 529 ASSSSSSSASSPAAAV 544

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
            (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 8    YTSIHTQTHCCLDSFLSTDQPTYACTKDEYL 100
            +T     T  C D  L   QP Y+C +D+Y+
Sbjct: 3173 HTCYSPGTKVCCDGLLYDPQPGYSCCEDKYI 3203

>DPOL_NPVAC (P18131) DNA polymerase (EC 2.7.7.7)|
          Length = 984

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 20  HTQTHCCLDSFLSTDQPTYACTKDEYLHFCYALVRLELRVPHTLDLD 160
           H  +   +D  +S     Y    DEY  FC+   +L  ++P T D D
Sbjct: 204 HNMSKASVDCIMSIGFVVYK--NDEYAKFCFMYHKLPTQIPETYDDD 248

>TIBA_ECOLI (Q9XD84) Adhesin/invasin tibA precursor (Glycoprotein tibA)|
          Length = 989

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 238 ETGEVIGVFESVQPSDTDLGAKAPKDVKIQGVWY 137
           E G  + VF+  Q SDT +G+    DV+  GV Y
Sbjct: 347 ENGGYLTVFDGHQASDTMVGSDGTLDVRSGGVLY 380

>KCNKA_RAT (Q9JIS4) Potassium channel subfamily K member 10 (Outward|
           rectifying potassium channel protein TREK-2) (TREK-2
           K(+) channel subunit)
          Length = 538

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 50  FLSTDQPTYACTKDEYL--HFCYALVRLELRVPHTLDLDILG 169
           F S+ + T A  K E+L  H C +   LE  + H LD D  G
Sbjct: 97  FESSQKNTIALEKAEFLRDHICVSPQELETLIQHALDADNAG 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,216,209
Number of Sequences: 219361
Number of extensions: 573687
Number of successful extensions: 1864
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1862
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)