ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26i01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TBCA_ARATH (O04350) Tubulin-specific chaperone A (Tubulin-foldin... 103 5e-22
2KPRS4_ORYSA (Q6ZFT5) Ribose-phosphate pyrophosphokinase 4 (EC 2.... 84 4e-16
3KPRS4_SPIOL (Q9XGA1) Ribose-phosphate pyrophosphokinase 4 (EC 2.... 76 7e-14
4KPRS4_ARATH (Q680A5) Ribose-phosphate pyrophosphokinase 4 (EC 2.... 75 2e-13
5KPRS3_ARATH (Q93Z66) Ribose-phosphate pyrophosphokinase 3 (EC 2.... 72 1e-12
6KPRS3_ORYSA (Q8S2E5) Ribose-phosphate pyrophosphokinase 3 (EC 2.... 71 3e-12
7KPRS3_SPIOL (Q9XGA0) Ribose-phosphate pyrophosphokinase 3, mitoc... 67 3e-11
8TBCA_MOUSE (P48428) Tubulin-specific chaperone A (Tubulin-foldin... 58 3e-08
9TBCA_HUMAN (O75347) Tubulin-specific chaperone A (Tubulin-foldin... 57 3e-08
10TBCA_RABIT (P80584) Tubulin-specific chaperone A (Tubulin-foldin... 57 6e-08
11TBCA_BOVIN (P48427) Tubulin-specific chaperone A (Tubulin-foldin... 56 1e-07
12TBCA_CHICK (P80585) Tubulin-specific chaperone A (Tubulin-foldin... 55 1e-07
13TBCA_YEAST (P48606) Tubulin-specific chaperone A (Tubulin-foldin... 37 0.036
14YQJE_BACSU (P54542) Hypothetical protein yqjE 34 0.30
15PACN3_MOUSE (Q99JB8) Protein kinase C and casein kinase II subst... 33 0.88
16PACN3_HUMAN (Q9UKS6) Protein kinase C and casein kinase substrat... 30 4.4
17YOSB_SCHPO (Q9P7L2) Protein C21C3.11 in chromosome II 30 4.4
18CHCH6_MOUSE (Q91VN4) Coiled-coil-helix-coiled-coil-helix domain-... 30 5.7
19ICAL_RABIT (P08855) Calpastatin (Calpain inhibitor) [Contains: E... 29 9.8
20PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolo... 29 9.8

>TBCA_ARATH (O04350) Tubulin-specific chaperone A (Tubulin-folding cofactor A)|
           (CFA) (TCP1-chaperonin cofactor A homolog)
          Length = 113

 Score =  103 bits (256), Expect = 5e-22
 Identities = 48/61 (78%), Positives = 58/61 (95%)
 Frame = -1

Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322
           ++EAAKTADMK+KGAD YDLKQQENVL ESRMM+PDCHKRLE+AL DLK+TLAEL+E++E
Sbjct: 29  EREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELEETDE 88

Query: 321 Q 319
           +
Sbjct: 89  K 89



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>KPRS4_ORYSA (Q6ZFT5) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 4)
          Length = 325

 Score = 83.6 bits (205), Expect = 4e-16
 Identities = 42/48 (87%), Positives = 43/48 (89%)
 Frame = +2

Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 619
           S  L   FFPTG+FERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI
Sbjct: 96  SFTLVLPFFPTGSFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 143



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>KPRS4_SPIOL (Q9XGA1) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 4)
          Length = 318

 Score = 76.3 bits (186), Expect = 7e-14
 Identities = 38/48 (79%), Positives = 41/48 (85%)
 Frame = +2

Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 619
           S  L   FFPTG+FER+EEEGDVATAFT+ARILS IP SRGGPTSVVI
Sbjct: 90  SFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPVSRGGPTSVVI 137



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>KPRS4_ARATH (Q680A5) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 4)
          Length = 337

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 37/48 (77%), Positives = 41/48 (85%)
 Frame = +2

Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 619
           S  L   FFPTG+FER+EEEGDVATAFT+ARI+S IP SRGGPTSVVI
Sbjct: 109 SFTLVLPFFPTGSFERMEEEGDVATAFTMARIVSNIPISRGGPTSVVI 156



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>KPRS3_ARATH (Q93Z66) Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 3)
          Length = 411

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 36/47 (76%), Positives = 39/47 (82%)
 Frame = +2

Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVV 616
           S  L   FFPTGT ER+E+EGDVATAFTLARILS IP SRGGPTS+V
Sbjct: 182 SFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLV 228



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>KPRS3_ORYSA (Q8S2E5) Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 3)
          Length = 409

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 36/48 (75%), Positives = 40/48 (83%)
 Frame = +2

Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 619
           S  L   FFPTGT ER+E+EGDVATAFTLARILS IP SRGGP+S+VI
Sbjct: 180 SFTLILPFFPTGTSERMEDEGDVATAFTLARILSNIPISRGGPSSLVI 227



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>KPRS3_SPIOL (Q9XGA0) Ribose-phosphate pyrophosphokinase 3, mitochondrial|
           precursor (EC 2.7.6.1) (Phosphoribosyl pyrophosphate
           synthetase 3)
          Length = 406

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 34/44 (77%), Positives = 37/44 (84%)
 Frame = +2

Query: 485 LAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVV 616
           L   FFPTGT ER+E+EGDVATAFTLARILS IP SR GPTS+V
Sbjct: 180 LVLPFFPTGTSERMEDEGDVATAFTLARILSNIPISREGPTSLV 223



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>TBCA_MOUSE (P48428) Tubulin-specific chaperone A (Tubulin-folding cofactor A)|
           (CFA) (TCP1-chaperonin cofactor A)
          Length = 107

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 27/60 (45%), Positives = 38/60 (63%)
 Frame = -1

Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322
           K++  K   MK +  + Y +K+Q  +L ESRMM+PDC +RLEAA TDL+  L   K+  E
Sbjct: 30  KQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIPDCQRRLEAAYTDLQQILESEKDLEE 89



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>TBCA_HUMAN (O75347) Tubulin-specific chaperone A (Tubulin-folding cofactor A)|
           (CFA) (TCP1-chaperonin cofactor A)
          Length = 107

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 26/60 (43%), Positives = 38/60 (63%)
 Frame = -1

Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322
           K++  K   M+ +  + YD+K+Q  +L ESRMM+PDC +RLEAA  DL+  L   K+  E
Sbjct: 30  KQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEE 89



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>TBCA_RABIT (P80584) Tubulin-specific chaperone A (Tubulin-folding cofactor A)|
           (CFA) (TCP1-chaperonin cofactor A)
          Length = 107

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 26/60 (43%), Positives = 38/60 (63%)
 Frame = -1

Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322
           K++  K   M+ +  + Y +K+Q  +L ESRMM+PDC +RLEAA TDL+  L   K+  E
Sbjct: 30  KQQEEKIEKMRAEDGENYAIKKQAEILQESRMMIPDCQRRLEAACTDLQQILESEKDLEE 89



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>TBCA_BOVIN (P48427) Tubulin-specific chaperone A (Tubulin-folding cofactor A)|
           (CFA) (TCP1-chaperonin cofactor A)
          Length = 107

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 27/60 (45%), Positives = 37/60 (61%)
 Frame = -1

Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322
           K++  K   MK +  + Y +K+Q  +L ESRMM+PDC +RLEAA TDL   L   K+  E
Sbjct: 30  KQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIPDCQRRLEAAHTDLLQLLESEKDLEE 89



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>TBCA_CHICK (P80585) Tubulin-specific chaperone A (Tubulin-folding cofactor A)|
           (CFA) (TCP1-chaperonin cofactor A)
          Length = 107

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 27/60 (45%), Positives = 35/60 (58%)
 Frame = -1

Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322
           K++  K   MK +  D Y +K+Q  +L ESRMM+PDC +RLE A  DL   L   KE  E
Sbjct: 30  KQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIPDCQRRLEIAHADLTQLLENEKELEE 89



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>TBCA_YEAST (P48606) Tubulin-specific chaperone A (Tubulin-folding cofactor A)|
           (CFA)
          Length = 106

 Score = 37.4 bits (85), Expect = 0.036
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = -1

Query: 501 KKEAAKTADMKE-KGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATL 346
           K + A  A +KE K  D YDLK+QE VL +++ ++P  ++++     DL+  L
Sbjct: 28  KDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80



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>YQJE_BACSU (P54542) Hypothetical protein yqjE|
          Length = 371

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = -1

Query: 546 ATSPSSSTRSKVPVGKKEAAKTADMK--EKGADTYDLKQQENVLAESRMMVPDCHKRLEA 373
           A + +S   SK+P+G+ +   TA++   E G  T  +  + ++LAE+R +VP+   ++EA
Sbjct: 202 AITIASKAISKMPLGRIDEETTANIGRFEGGTQTNIVCDEVHILAEARSLVPE---KMEA 258

Query: 372 ALTDLKATLAE 340
            +  +KA   E
Sbjct: 259 QVQKMKAAFEE 269



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>PACN3_MOUSE (Q99JB8) Protein kinase C and casein kinase II substrate protein 3|
          Length = 424

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 4/132 (3%)
 Frame = -1

Query: 486 KTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNEQXXXX 307
           KTA  +E  A       QE  L + +  V  C K  E   T  + TLAEL          
Sbjct: 165 KTAQTRESHAKADSSMSQEQ-LRKLQERVGRCTKEAEKMKTQYEQTLAELNR-------- 215

Query: 306 XXXXXXXXXXXXVYTPTEAED*ARNFLSLKCQYASPDLLLSDMVVTFHMTL----TRKFV 139
                        YTP   ED  + F S +       L   D+++T H  L    + KF 
Sbjct: 216 -------------YTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKF- 261

Query: 138 CITTHDLSRDVQ 103
               H+L RD+Q
Sbjct: 262 ----HELHRDLQ 269



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>PACN3_HUMAN (Q9UKS6) Protein kinase C and casein kinase substrate in neurons|
           protein 3 (SH3 domain-containing protein 6511)
           (Endophilin I)
          Length = 424

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 4/131 (3%)
 Frame = -1

Query: 486 KTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNEQXXXX 307
           KTA  +E  A       QE  L + +  V  C K  E      + TLAEL          
Sbjct: 165 KTAQTRESHAKADSAVSQEQ-LRKLQERVERCAKEAEKTKAQYEQTLAELHR-------- 215

Query: 306 XXXXXXXXXXXXVYTPTEAED*ARNFLSLKCQYASPDLLLSDMVVTFHMTL----TRKFV 139
                        YTP   ED  + F + +       L   DM++T H  L    + KF 
Sbjct: 216 -------------YTPRYMEDMEQAFETCQAAERQRLLFFKDMLLTLHQHLDLSSSEKF- 261

Query: 138 CITTHDLSRDV 106
               H+L RD+
Sbjct: 262 ----HELHRDL 268



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>YOSB_SCHPO (Q9P7L2) Protein C21C3.11 in chromosome II|
          Length = 425

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
 Frame = -1

Query: 618 MTTLVGPPRDFGIMERMRASVNAVATSPSSSTRSKVPVGKKEAAKTADMKEK-----GAD 454
           + T+    +D G++E++     AV  +PS S++S  P  K  ++  A +K++     G+D
Sbjct: 249 LPTVSNQEKDEGVIEKV-----AVNNTPSVSSKSPFPKKKSFSSMLAQVKKEKAENNGSD 303

Query: 453 TYDLKQQENVL 421
            YDL+  ++ L
Sbjct: 304 GYDLQPTKSQL 314



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>CHCH6_MOUSE (Q91VN4) Coiled-coil-helix-coiled-coil-helix domain-containing|
           protein 6
          Length = 273

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
 Frame = -1

Query: 564 ASVNAVATSPSSSTRSKVPVG---------KKEAAKTADMKEKGADTYDLKQ-QENVLAE 415
           A    V T+PSSS R  +P G         K  +A++    +  A   DLK+ Q+  LA 
Sbjct: 77  APTTPVPTAPSSSVRG-LPGGTCKGPLTDVKVPSAESGGGLQSSAVKEDLKKFQQEQLAV 135

Query: 414 SRMMVPDCHKRLEAALTDLKATLAELKES 328
              MV    K  EAA   LKA+L + K S
Sbjct: 136 QDEMVRVAKKEKEAAEKHLKASLPKKKAS 164



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>ICAL_RABIT (P08855) Calpastatin (Calpain inhibitor) [Contains: Erythrocyte|
           calpastatin]
          Length = 718

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
 Frame = -1

Query: 552 AVATSPSSSTRSKVPVGKKE-AAKTADMKEKGADTYDLKQQ--ENVLAESRMMVPDCHKR 382
           A  T P +  +   P G K  AA T     K  D    K+      LAE +   P     
Sbjct: 93  AKRTEPETKPQDTKPAGGKSVAAGTTAAPGKAGDPKKEKKSLPAAALAEPKPDEPSGKSG 152

Query: 381 LEAALTDLKATLAELKESNE 322
           ++AAL DL  TL E  E+ E
Sbjct: 153 MDAALDDLIDTLGEPSETQE 172



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>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)|
           (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA
           protein kinase)
          Length = 1007

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 14/77 (18%)
 Frame = -1

Query: 582 IMERMRASVNAVATSPSSSTRSKVP----VGKKEAAKTADMKEKGADTYDLK-------- 439
           + E    SV +  +SP SSTRS+ P    + ++ AA   + + +  DT++          
Sbjct: 555 LAEDSNISVPSEPSSPQSSTRSRSPSPDDILERVAADVKEYERENVDTFEASVKAKHNLM 614

Query: 438 --QQENVLAESRMMVPD 394
             +Q N  ++ +++ PD
Sbjct: 615 TVEQNNGSSQKKILAPD 631


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,622,322
Number of Sequences: 219361
Number of extensions: 1262221
Number of successful extensions: 3850
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3848
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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