Clone Name | rbasd26i01 |
---|---|
Clone Library Name | barley_pub |
>TBCA_ARATH (O04350) Tubulin-specific chaperone A (Tubulin-folding cofactor A)| (CFA) (TCP1-chaperonin cofactor A homolog) Length = 113 Score = 103 bits (256), Expect = 5e-22 Identities = 48/61 (78%), Positives = 58/61 (95%) Frame = -1 Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322 ++EAAKTADMK+KGAD YDLKQQENVL ESRMM+PDCHKRLE+AL DLK+TLAEL+E++E Sbjct: 29 EREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAELEETDE 88 Query: 321 Q 319 + Sbjct: 89 K 89
>KPRS4_ORYSA (Q6ZFT5) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)| (Phosphoribosyl pyrophosphate synthetase 4) Length = 325 Score = 83.6 bits (205), Expect = 4e-16 Identities = 42/48 (87%), Positives = 43/48 (89%) Frame = +2 Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 619 S L FFPTG+FERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI Sbjct: 96 SFTLVLPFFPTGSFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 143
>KPRS4_SPIOL (Q9XGA1) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)| (Phosphoribosyl pyrophosphate synthetase 4) Length = 318 Score = 76.3 bits (186), Expect = 7e-14 Identities = 38/48 (79%), Positives = 41/48 (85%) Frame = +2 Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 619 S L FFPTG+FER+EEEGDVATAFT+ARILS IP SRGGPTSVVI Sbjct: 90 SFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPVSRGGPTSVVI 137
>KPRS4_ARATH (Q680A5) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)| (Phosphoribosyl pyrophosphate synthetase 4) Length = 337 Score = 74.7 bits (182), Expect = 2e-13 Identities = 37/48 (77%), Positives = 41/48 (85%) Frame = +2 Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 619 S L FFPTG+FER+EEEGDVATAFT+ARI+S IP SRGGPTSVVI Sbjct: 109 SFTLVLPFFPTGSFERMEEEGDVATAFTMARIVSNIPISRGGPTSVVI 156
>KPRS3_ARATH (Q93Z66) Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1)| (Phosphoribosyl pyrophosphate synthetase 3) Length = 411 Score = 72.0 bits (175), Expect = 1e-12 Identities = 36/47 (76%), Positives = 39/47 (82%) Frame = +2 Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVV 616 S L FFPTGT ER+E+EGDVATAFTLARILS IP SRGGPTS+V Sbjct: 182 SFTLVLPFFPTGTSERMEDEGDVATAFTLARILSNIPTSRGGPTSLV 228
>KPRS3_ORYSA (Q8S2E5) Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1)| (Phosphoribosyl pyrophosphate synthetase 3) Length = 409 Score = 70.9 bits (172), Expect = 3e-12 Identities = 36/48 (75%), Positives = 40/48 (83%) Frame = +2 Query: 476 SAVLAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVVI 619 S L FFPTGT ER+E+EGDVATAFTLARILS IP SRGGP+S+VI Sbjct: 180 SFTLILPFFPTGTSERMEDEGDVATAFTLARILSNIPISRGGPSSLVI 227
>KPRS3_SPIOL (Q9XGA0) Ribose-phosphate pyrophosphokinase 3, mitochondrial| precursor (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 3) Length = 406 Score = 67.4 bits (163), Expect = 3e-11 Identities = 34/44 (77%), Positives = 37/44 (84%) Frame = +2 Query: 485 LAASFFPTGTFERVEEEGDVATAFTLARILSMIPKSRGGPTSVV 616 L FFPTGT ER+E+EGDVATAFTLARILS IP SR GPTS+V Sbjct: 180 LVLPFFPTGTSERMEDEGDVATAFTLARILSNIPISREGPTSLV 223
>TBCA_MOUSE (P48428) Tubulin-specific chaperone A (Tubulin-folding cofactor A)| (CFA) (TCP1-chaperonin cofactor A) Length = 107 Score = 57.8 bits (138), Expect = 3e-08 Identities = 27/60 (45%), Positives = 38/60 (63%) Frame = -1 Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322 K++ K MK + + Y +K+Q +L ESRMM+PDC +RLEAA TDL+ L K+ E Sbjct: 30 KQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIPDCQRRLEAAYTDLQQILESEKDLEE 89
>TBCA_HUMAN (O75347) Tubulin-specific chaperone A (Tubulin-folding cofactor A)| (CFA) (TCP1-chaperonin cofactor A) Length = 107 Score = 57.4 bits (137), Expect = 3e-08 Identities = 26/60 (43%), Positives = 38/60 (63%) Frame = -1 Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322 K++ K M+ + + YD+K+Q +L ESRMM+PDC +RLEAA DL+ L K+ E Sbjct: 30 KQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENEKDLEE 89
>TBCA_RABIT (P80584) Tubulin-specific chaperone A (Tubulin-folding cofactor A)| (CFA) (TCP1-chaperonin cofactor A) Length = 107 Score = 56.6 bits (135), Expect = 6e-08 Identities = 26/60 (43%), Positives = 38/60 (63%) Frame = -1 Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322 K++ K M+ + + Y +K+Q +L ESRMM+PDC +RLEAA TDL+ L K+ E Sbjct: 30 KQQEEKIEKMRAEDGENYAIKKQAEILQESRMMIPDCQRRLEAACTDLQQILESEKDLEE 89
>TBCA_BOVIN (P48427) Tubulin-specific chaperone A (Tubulin-folding cofactor A)| (CFA) (TCP1-chaperonin cofactor A) Length = 107 Score = 55.8 bits (133), Expect = 1e-07 Identities = 27/60 (45%), Positives = 37/60 (61%) Frame = -1 Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322 K++ K MK + + Y +K+Q +L ESRMM+PDC +RLEAA TDL L K+ E Sbjct: 30 KQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIPDCQRRLEAAHTDLLQLLESEKDLEE 89
>TBCA_CHICK (P80585) Tubulin-specific chaperone A (Tubulin-folding cofactor A)| (CFA) (TCP1-chaperonin cofactor A) Length = 107 Score = 55.5 bits (132), Expect = 1e-07 Identities = 27/60 (45%), Positives = 35/60 (58%) Frame = -1 Query: 501 KKEAAKTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNE 322 K++ K MK + D Y +K+Q +L ESRMM+PDC +RLE A DL L KE E Sbjct: 30 KQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIPDCQRRLEIAHADLTQLLENEKELEE 89
>TBCA_YEAST (P48606) Tubulin-specific chaperone A (Tubulin-folding cofactor A)| (CFA) Length = 106 Score = 37.4 bits (85), Expect = 0.036 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Frame = -1 Query: 501 KKEAAKTADMKE-KGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATL 346 K + A A +KE K D YDLK+QE VL +++ ++P ++++ DL+ L Sbjct: 28 KDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80
>YQJE_BACSU (P54542) Hypothetical protein yqjE| Length = 371 Score = 34.3 bits (77), Expect = 0.30 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Frame = -1 Query: 546 ATSPSSSTRSKVPVGKKEAAKTADMK--EKGADTYDLKQQENVLAESRMMVPDCHKRLEA 373 A + +S SK+P+G+ + TA++ E G T + + ++LAE+R +VP+ ++EA Sbjct: 202 AITIASKAISKMPLGRIDEETTANIGRFEGGTQTNIVCDEVHILAEARSLVPE---KMEA 258 Query: 372 ALTDLKATLAE 340 + +KA E Sbjct: 259 QVQKMKAAFEE 269
>PACN3_MOUSE (Q99JB8) Protein kinase C and casein kinase II substrate protein 3| Length = 424 Score = 32.7 bits (73), Expect = 0.88 Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 4/132 (3%) Frame = -1 Query: 486 KTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNEQXXXX 307 KTA +E A QE L + + V C K E T + TLAEL Sbjct: 165 KTAQTRESHAKADSSMSQEQ-LRKLQERVGRCTKEAEKMKTQYEQTLAELNR-------- 215 Query: 306 XXXXXXXXXXXXVYTPTEAED*ARNFLSLKCQYASPDLLLSDMVVTFHMTL----TRKFV 139 YTP ED + F S + L D+++T H L + KF Sbjct: 216 -------------YTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKF- 261 Query: 138 CITTHDLSRDVQ 103 H+L RD+Q Sbjct: 262 ----HELHRDLQ 269
>PACN3_HUMAN (Q9UKS6) Protein kinase C and casein kinase substrate in neurons| protein 3 (SH3 domain-containing protein 6511) (Endophilin I) Length = 424 Score = 30.4 bits (67), Expect = 4.4 Identities = 35/131 (26%), Positives = 47/131 (35%), Gaps = 4/131 (3%) Frame = -1 Query: 486 KTADMKEKGADTYDLKQQENVLAESRMMVPDCHKRLEAALTDLKATLAELKESNEQXXXX 307 KTA +E A QE L + + V C K E + TLAEL Sbjct: 165 KTAQTRESHAKADSAVSQEQ-LRKLQERVERCAKEAEKTKAQYEQTLAELHR-------- 215 Query: 306 XXXXXXXXXXXXVYTPTEAED*ARNFLSLKCQYASPDLLLSDMVVTFHMTL----TRKFV 139 YTP ED + F + + L DM++T H L + KF Sbjct: 216 -------------YTPRYMEDMEQAFETCQAAERQRLLFFKDMLLTLHQHLDLSSSEKF- 261 Query: 138 CITTHDLSRDV 106 H+L RD+ Sbjct: 262 ----HELHRDL 268
>YOSB_SCHPO (Q9P7L2) Protein C21C3.11 in chromosome II| Length = 425 Score = 30.4 bits (67), Expect = 4.4 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%) Frame = -1 Query: 618 MTTLVGPPRDFGIMERMRASVNAVATSPSSSTRSKVPVGKKEAAKTADMKEK-----GAD 454 + T+ +D G++E++ AV +PS S++S P K ++ A +K++ G+D Sbjct: 249 LPTVSNQEKDEGVIEKV-----AVNNTPSVSSKSPFPKKKSFSSMLAQVKKEKAENNGSD 303 Query: 453 TYDLKQQENVL 421 YDL+ ++ L Sbjct: 304 GYDLQPTKSQL 314
>CHCH6_MOUSE (Q91VN4) Coiled-coil-helix-coiled-coil-helix domain-containing| protein 6 Length = 273 Score = 30.0 bits (66), Expect = 5.7 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 10/89 (11%) Frame = -1 Query: 564 ASVNAVATSPSSSTRSKVPVG---------KKEAAKTADMKEKGADTYDLKQ-QENVLAE 415 A V T+PSSS R +P G K +A++ + A DLK+ Q+ LA Sbjct: 77 APTTPVPTAPSSSVRG-LPGGTCKGPLTDVKVPSAESGGGLQSSAVKEDLKKFQQEQLAV 135 Query: 414 SRMMVPDCHKRLEAALTDLKATLAELKES 328 MV K EAA LKA+L + K S Sbjct: 136 QDEMVRVAKKEKEAAEKHLKASLPKKKAS 164
>ICAL_RABIT (P08855) Calpastatin (Calpain inhibitor) [Contains: Erythrocyte| calpastatin] Length = 718 Score = 29.3 bits (64), Expect = 9.8 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Frame = -1 Query: 552 AVATSPSSSTRSKVPVGKKE-AAKTADMKEKGADTYDLKQQ--ENVLAESRMMVPDCHKR 382 A T P + + P G K AA T K D K+ LAE + P Sbjct: 93 AKRTEPETKPQDTKPAGGKSVAAGTTAAPGKAGDPKKEKKSLPAAALAEPKPDEPSGKSG 152 Query: 381 LEAALTDLKATLAELKESNE 322 ++AAL DL TL E E+ E Sbjct: 153 MDAALDDLIDTLGEPSETQE 172
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 29.3 bits (64), Expect = 9.8 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 14/77 (18%) Frame = -1 Query: 582 IMERMRASVNAVATSPSSSTRSKVP----VGKKEAAKTADMKEKGADTYDLK-------- 439 + E SV + +SP SSTRS+ P + ++ AA + + + DT++ Sbjct: 555 LAEDSNISVPSEPSSPQSSTRSRSPSPDDILERVAADVKEYERENVDTFEASVKAKHNLM 614 Query: 438 --QQENVLAESRMMVPD 394 +Q N ++ +++ PD Sbjct: 615 TVEQNNGSSQKKILAPD 631 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,622,322 Number of Sequences: 219361 Number of extensions: 1262221 Number of successful extensions: 3850 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3711 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3848 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)