ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd26h21 |
|---|---|
| Clone Library Name | barley_pub |
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D| (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) Length = 815 Score = 132 bits (332), Expect = 5e-31 Identities = 70/108 (64%), Positives = 73/108 (67%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D ALAKYTQGF G DITEICQR+CKYAI +P Sbjct: 675 DLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESPEAMEEDEEEIAE- 733 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQP 163 I+A HFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD P Sbjct: 734 IKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDAP 781
>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)| Length = 809 Score = 132 bits (331), Expect = 6e-31 Identities = 71/104 (68%), Positives = 72/104 (69%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D ALAKYTQGF G DITEICQRACKYAI NP E Sbjct: 675 DIGALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSE 734 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 175 I+AAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF Sbjct: 735 IKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778
>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)| (Transitional endoplasmic reticulum ATPase E) Length = 810 Score = 129 bits (323), Expect = 5e-30 Identities = 71/105 (67%), Positives = 72/105 (68%), Gaps = 1/105 (0%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D +ALAKYTQGF G DITEICQRACKYAI NP Sbjct: 674 DVTALAKYTQGFSGADITEICQRACKYAIRENIEKDIENERRRSQNPEAMEEDMVDDEVS 733 Query: 306 -IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 175 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF Sbjct: 734 EIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRF 778
>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing| protein homolog) (VCP) Length = 807 Score = 126 bits (316), Expect = 3e-29 Identities = 68/107 (63%), Positives = 73/107 (68%), Gaps = 1/107 (0%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D ALA++TQGF G DITEICQRACKYAI NP Sbjct: 675 DLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVA 734 Query: 306 -IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 169 I+AAHFEESMK+ARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP+ Sbjct: 735 EIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPE 781
>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog| Length = 805 Score = 122 bits (307), Expect = 4e-28 Identities = 67/106 (63%), Positives = 71/106 (66%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D ALAK+TQGF G D+TEICQRACKYAI NP Sbjct: 675 DLRALAKHTQGFSGADVTEICQRACKYAIRENIEKDIEREKRRQENPDSMDEDVDEVPE- 733 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPD 169 I+ AHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFG+EFRF D Sbjct: 734 IKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFAD 779
>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 104 bits (260), Expect = 1e-22 Identities = 59/105 (56%), Positives = 64/105 (60%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D LAK T GF G D+TEICQRACK AI NP E Sbjct: 670 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPE 729 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 172 IR HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 730 IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773
>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 104 bits (260), Expect = 1e-22 Identities = 59/105 (56%), Positives = 64/105 (60%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D LAK T GF G D+TEICQRACK AI NP E Sbjct: 670 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPE 729 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 172 IR HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 730 IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773
>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 104 bits (260), Expect = 1e-22 Identities = 59/105 (56%), Positives = 64/105 (60%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D LAK T GF G D+TEICQRACK AI NP E Sbjct: 670 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPE 729 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 172 IR HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 730 IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773
>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 104 bits (260), Expect = 1e-22 Identities = 59/105 (56%), Positives = 64/105 (60%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D LAK T GF G D+TEICQRACK AI NP E Sbjct: 670 DLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPE 729 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 172 IR HFEE+M++ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 730 IRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 773
>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) Length = 805 Score = 102 bits (255), Expect = 4e-22 Identities = 59/105 (56%), Positives = 63/105 (60%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D LAK T GF G D+TEICQRACK AI NP E Sbjct: 671 DVDFLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERDRQTNPSAMEVEEDDPVPE 730 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFP 172 IR HFEE+M+ ARRSVSD DIRKY+ FAQTLQQSRGFGS FRFP Sbjct: 731 IRRDHFEEAMRLARRSVSDNDIRKYEMFAQTLQQSRGFGS-FRFP 774
>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2| (p97/CDC48 homolog 2) Length = 810 Score = 97.8 bits (242), Expect = 1e-20 Identities = 54/111 (48%), Positives = 64/111 (57%), Gaps = 4/111 (3%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D + LAK T GF G D+TEICQRACK AI + Sbjct: 676 DLNFLAKNTVGFSGADLTEICQRACKLAIRESIEREIRQEKERQDRSARGEELMEDELAD 735 Query: 306 ----IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 166 I AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP + Sbjct: 736 PVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGE 786
>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1| (p97/CDC48 homolog 1) Length = 809 Score = 97.8 bits (242), Expect = 1e-20 Identities = 54/111 (48%), Positives = 64/111 (57%), Gaps = 4/111 (3%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D + LAK T GF G D+TEICQRACK AI + Sbjct: 678 DLTFLAKNTVGFSGADLTEICQRACKLAIRESIEKEIRIEKERQDRQARGEELMEDDAVD 737 Query: 306 ----IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQ 166 I AHFEE+MK+ARRSV+D DIRKY+ FAQTLQQSRGFG+ F+FP + Sbjct: 738 PVPEITRAHFEEAMKFARRSVTDNDIRKYEMFAQTLQQSRGFGNNFKFPGE 788
>CDC48_YEAST (P25694) Cell division control protein 48| Length = 835 Score = 68.2 bits (165), Expect = 1e-11 Identities = 42/120 (35%), Positives = 57/120 (47%), Gaps = 12/120 (10%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 + +A+AK TQGF G D+ I QRA KYAI + Sbjct: 681 ELTAIAKATQGFSGADLLYIVQRAAKYAIKDSIEAHRQHEAEKEVKVEGEDVEMTDEGAK 740 Query: 306 ------------IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDQP 163 I HF E+MK A+RSVSDA++R+Y+A++Q ++ SRG S F F D P Sbjct: 741 AEQEPEVDPVPYITKEHFAEAMKTAKRSVSDAELRRYEAYSQQMKASRGQFSNFNFNDAP 800
>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48| Length = 815 Score = 63.9 bits (154), Expect = 2e-10 Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D A+AK T GF G D+ + QRA K AI P Sbjct: 690 DLRAVAKATHGFSGADLEFVVQRAVKLAIKDSIEEDIKRENETGEAPADDVVMDEDASVS 749 Query: 306 -IRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGF-GSEFRFPD 169 ++ H EE+MK ARRSVSDA++R+Y+A+A L SRG G +F D Sbjct: 750 QVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSRGLTGFQFDSAD 797
>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase| Length = 1229 Score = 37.7 bits (86), Expect = 0.016 Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 7/99 (7%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXX- 310 D +AK T+GF G DIT +CQ A AI Sbjct: 1126 DIHDMAKRTEGFSGADITNLCQSAVNEAIKETIHLLNIRKKEQEEQRKKNKNSFKIDDTD 1185 Query: 309 ------EIRAAHFEESMKYARRSVSDADIRKYQAFAQTL 211 + HF+ + K AR S+ D+ KY+ F + L Sbjct: 1186 TYDPVPTLSKKHFDLAFKNARISIQPEDVLKYEKFKEKL 1224
>Y1297_ARCFU (O28972) Cell division cycle protein 48 homolog AF1297| Length = 733 Score = 35.0 bits (79), Expect = 0.11 Identities = 22/82 (26%), Positives = 33/82 (40%) Frame = -2 Query: 474 LAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 295 LA+ T+G+ G DI +C+ A AI I Sbjct: 651 LAEKTEGYSGADIEAVCREAGMLAIRELIKPGMTREEAKEAAKKLK----------ITKK 700 Query: 294 HFEESMKYARRSVSDADIRKYQ 229 HFEE++K R S++ D+ KY+ Sbjct: 701 HFEEALKKVRPSLTKEDVEKYE 722 Score = 28.9 bits (63), Expect = 7.6 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAI 400 D LA+ T GF G D+ +C+ A +A+ Sbjct: 373 DLEELAELTNGFVGADLEALCKEAAMHAL 401
>CD48C_ARATH (Q9SS94) Cell division control protein 48 homolog C (AtCDC48c)| Length = 820 Score = 32.3 bits (72), Expect = 0.69 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Frame = -2 Query: 486 DXSALAKYT-QGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXX 310 D +AK +GF G D+ + Q+A A+ + Sbjct: 718 DLDGIAKNNCEGFSGADLAHLVQKATFQAV----------EEMIGSSESSEDDVTDITQC 767 Query: 309 EIRAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSE 184 I+ HFE+++ SV+ R Y A + LQ+S G +E Sbjct: 768 TIKTRHFEQALSLVSPSVNKQQRRHYDALSTKLQESVGRNTE 809
>ADRO_BOVIN (P08165) NADPH:adrenodoxin oxidoreductase, mitochondrial precursor| (EC 1.18.1.2) (Adrenodoxin reductase) (AR) (Ferredoxin reductase) (Ferredoxin--NADP(+) reductase) Length = 492 Score = 30.0 bits (66), Expect = 3.4 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 347 PKQWRRMRWTRWLRSELPTSRS 282 P+ WR W+ W R+ LP SRS Sbjct: 3 PRCWRWWPWSSWTRTRLPPSRS 24
>KTNA1_HUMAN (O75449) Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3)| (Katanin p60 subunit A1) (p60 katanin) Length = 491 Score = 29.6 bits (65), Expect = 4.4 Identities = 20/86 (23%), Positives = 34/86 (39%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXE 307 D +++A+ +G+ G DIT +C+ A A+ Sbjct: 405 DLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHMPTT------ 458 Query: 306 IRAAHFEESMKYARRSVSDADIRKYQ 229 FE ++K +SVS ADI +Y+ Sbjct: 459 --MEDFEMALKKVSKSVSAADIERYE 482
>Y802_XYLFT (Q87D84) UPF0149 protein PD0802| Length = 185 Score = 28.9 bits (63), Expect = 7.6 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Frame = +1 Query: 178 PELAAESTGLLQSLG------KGLVLADVGVAHTPAG-ILHRLLEVGSSDL 309 PEL +GLL G ++LAD GVA P G +L RL + +S L Sbjct: 27 PELHGSLSGLLAGGGCNGPDWLAMILADAGVAAPPKGSVLERLYQATASQL 77
>Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156| Length = 903 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -2 Query: 474 LAKYTQGFXGXDITEICQRACKYAI 400 LAK T+G+ G DI +C+ A A+ Sbjct: 648 LAKKTEGYTGADIEALCREAAMLAV 672
>KATL1_RAT (Q5XIK7) Katanin p60 ATPase-containing subunit A-like 1 (EC| 3.6.4.3) (Katanin p60 subunit A-like 1) (p60 katanin-like 1) Length = 488 Score = 28.5 bits (62), Expect = 9.9 Identities = 20/82 (24%), Positives = 32/82 (39%) Frame = -2 Query: 474 LAKYTQGFXGXDITEICQRACKYAIXXXXXXXXXXXXXXXXNPXXXXXXXXXXXXEIRAA 295 +A+ T+G+ G DIT IC+ A A+ + Sbjct: 406 IAEKTEGYSGADITNICRDASLMAM--------RRRINGLSPEEIRALSKEELQMPVTRG 457 Query: 294 HFEESMKYARRSVSDADIRKYQ 229 E ++K +SVS AD+ KY+ Sbjct: 458 DLELALKKIAKSVSAADLEKYE 479
>SO2A1_MOUSE (Q9EPT5) Solute carrier organic anion transporter family member 2A1| (Solute carrier family 21 member 2) (Prostaglandin transporter) (PGT) Length = 643 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 5/38 (13%) Frame = -1 Query: 298 CPLRGVDEVCPPECERRRHPQVPG-----LCPDSAAVP 200 C V EV PP HPQ P LCPDS P Sbjct: 419 CSTPAVAEVYPPSTPSSIHPQPPACRRDCLCPDSVFHP 456
>PRS10_SPETR (P62335) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) (Conserved ATPase domain protein 44) (CADp44) Length = 389 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAI 400 D A+ K + GF G D+ +C A +AI Sbjct: 327 DYEAIVKLSDGFNGADLRNVCTEAGMFAI 355
>PRS10_MOUSE (P62334) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) Length = 389 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAI 400 D A+ K + GF G D+ +C A +AI Sbjct: 327 DYEAIVKLSDGFNGADLRNVCTEAGMFAI 355
>PRS10_HUMAN (P62333) 26S protease regulatory subunit S10B (Proteasome subunit| p42) (Proteasome 26S subunit ATPase 6) Length = 389 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRACKYAI 400 D A+ K + GF G D+ +C A +AI Sbjct: 327 DYEAIVKLSDGFNGADLRNVCTEAGMFAI 355
>ATD1B_BRARE (Q503W7) ATPase family AAA domain-containing protein 1-B| Length = 362 Score = 28.5 bits (62), Expect = 9.9 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 486 DXSALAKYTQGFXGXDITEICQRA 415 + S +AK T GF G D+ E+C+ A Sbjct: 287 ELSEIAKQTDGFSGSDLREMCRDA 310 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,999,493 Number of Sequences: 219361 Number of extensions: 580003 Number of successful extensions: 1793 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 1703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1777 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
