ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd26h19 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3| theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/60 (43%), Positives = 31/60 (51%) Frame = -3 Query: 600 SPSKYVPKXKREGDSSSQRTAVAAETDRWGXXXXXXXXXXXXXXXXRDARPLRQDAPPAR 421 +PSKY+PK KR GDSSS + + + DRWG PLRQD PPAR Sbjct: 887 APSKYIPKFKRGGDSSSIPSG-SRDEDRWGSRG-----------------PLRQDGPPAR 928
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 33.9 bits (76), Expect = 0.43 Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 2/78 (2%) Frame = +3 Query: 345 HRPAGGQGAPLDVXXXXXXXXXXXHHVQEGHLGGGDE--HHAEEELPGGEQGEDDHHAPT 518 HR G +P + HH G GG E HH+ E HHAP Sbjct: 242 HRGQGSHTSPSALSPTPAGVSADEHHNGSGTGGGAGEADHHSTTE----------HHAPP 291 Query: 519 GLFQLQQPSSDCYCHPHV 572 Q Q P + HPH+ Sbjct: 292 SHPQQQHPHHQQHHHPHL 309
>BCLF1_MOUSE (Q8K019) Bcl-2-associated transcription factor 1 (Btf)| Length = 919 Score = 31.2 bits (69), Expect = 2.8 Identities = 17/77 (22%), Positives = 36/77 (46%) Frame = +1 Query: 37 CDSQNIKHN*XNSTKSPFENLGAQQANSSNRASRYQWQTFNCV*SSQAWKEDGKNLSQQA 216 CDS +++H+ K + G + + + SR Q +T + +K+D K+ ++ Sbjct: 686 CDSADLRHDIDRRRKERSKERGDSKGSRESSGSRKQEKTPKDYKEYKPYKDDSKHKGRER 745 Query: 217 GRARRISGQEASAPPAS 267 +R S + + P+S Sbjct: 746 DHSRSSSSSASPSSPSS 762
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Frame = -1 Query: 449 PSAKMPLLHVMSAPSARRLLP-PHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILHPTP 273 P A + H +S + + P H LP+ +L H+++ G G L LHP P Sbjct: 2189 PPAPVHAQHALSFSNLHEMQPLAHGASTVLPSVSQLLSHHHIVSPGSGSAGSLSRLHPVP 2248 Query: 272 LP 267 +P Sbjct: 2249 VP 2250
>ICEA_PANAN (P20469) Ice nucleation protein inaA| Length = 1322 Score = 30.4 bits (67), Expect = 4.8 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +1 Query: 316 PAFSRCSWSSTVRLAGRGRLLTCGGRSLLAEGAD---ITCRRGILAEGTSITQ----RRS 474 P ++ + + ++ +AG+G T G RS L GAD + RG L G TQ R Sbjct: 1156 PESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSK 1215 Query: 475 FLAGSRA 495 LAG+ + Sbjct: 1216 LLAGNNS 1222
>ICEN_PANAN (Q47879) Ice nucleation protein inaU| Length = 1034 Score = 30.4 bits (67), Expect = 4.8 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +1 Query: 316 PAFSRCSWSSTVRLAGRGRLLTCGGRSLLAEGAD---ITCRRGILAEGTSITQ----RRS 474 P ++ + + ++ +AG+G T G RS L GAD + RG L G TQ R Sbjct: 868 PESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSK 927 Query: 475 FLAGSRA 495 LAG+ + Sbjct: 928 LLAGNNS 934
>ICEN_ENTAG (P16239) Ice nucleation protein| Length = 1258 Score = 30.4 bits (67), Expect = 4.8 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +1 Query: 316 PAFSRCSWSSTVRLAGRGRLLTCGGRSLLAEGAD---ITCRRGILAEGTSITQ----RRS 474 P ++ + + ++ +AG+G T G RS L GAD + RG L G TQ R Sbjct: 1092 PESTQITGNRSMLIAGKGSSQTAGYRSTLISGADSVQMAGERGKLIAGADSTQTAGDRSK 1151 Query: 475 FLAGSRA 495 LAG+ + Sbjct: 1152 LLAGNNS 1158
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/55 (29%), Positives = 19/55 (34%) Frame = +1 Query: 181 WKEDGKNLSQQAGRARRISGQEASAPPASGRGVG*RICRGPRSRTPAFSRCSWSS 345 W E+ S G G + GRG G CR P S C WS+ Sbjct: 1300 WGEESGAGSASRGPTSSQRGPHPDGKESQGRGRGLEACRSPNSPQLPLDSCIWST 1354
>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) Length = 559 Score = 29.6 bits (65), Expect = 8.1 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -1 Query: 449 PSAKMPLLHVMSAPSARRLL----PPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILH 282 P PL +S S R + PP V P P + + L + P +LH Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAP-GVLH 383 Query: 281 PTPLPLAGGAEASWPEMRRALPAC 210 P P P+A P + RA P C Sbjct: 384 PAPPPIAPPLVQPSPPVARAAPVC 407
>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1| (WASP-family protein member 1) (WAVE-1 protein) (Verprolin homology domain-containing protein 1) Length = 559 Score = 29.6 bits (65), Expect = 8.1 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 4/84 (4%) Frame = -1 Query: 449 PSAKMPLLHVMSAPSARRLL----PPHVKRRPLPASRTVLLQLHLLNAGVLDLGPLQILH 282 P PL +S S R + PP V P P + + L + P +LH Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPPPAPLQIAP-GVLH 383 Query: 281 PTPLPLAGGAEASWPEMRRALPAC 210 P P P+A P + RA P C Sbjct: 384 PAPPPIAPPLVQPSPPVARAAPVC 407 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,863,300 Number of Sequences: 219361 Number of extensions: 1620919 Number of successful extensions: 4934 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4713 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4925 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
