ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26h14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AERA_AERSO (Q06304) Aerolysin precursor (Hemolysin) 29 7.8
2AERA_AERSA (Q08676) Aerolysin precursor (Hemolysin-3) 29 7.8

>AERA_AERSO (Q06304) Aerolysin precursor (Hemolysin)|
          Length = 488

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 144 YMVFPGFYIEHKTGIHQXRNNHSIFPRCNSDYDVADQFTLFVDSHRVL-NNNGYILGLRC 320
           Y + P  Y+ H  G      NHS  P    D DV    T   D   +  NN+G   G RC
Sbjct: 135 YFIKPVSYLAHYLGYAWVGGNHS--PYVGEDMDV----TRVGDGWLIKGNNDGGCSGYRC 188

Query: 321 GNRS 332
           G +S
Sbjct: 189 GEKS 192



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>AERA_AERSA (Q08676) Aerolysin precursor (Hemolysin-3)|
          Length = 489

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 144 YMVFPGFYIEHKTGIHQXRNNHSIFPRCNSDYDVADQFTLFVDSHRVL-NNNGYILGLRC 320
           Y + P  Y+ H  G      NHS  P    D DV    T   D   +  NN+G   G RC
Sbjct: 136 YFIKPVSYLAHYLGYAWVGGNHS--PYVGEDMDV----TRVGDGWLIKGNNDGGCSGYRC 189

Query: 321 GNRS 332
           G +S
Sbjct: 190 GEKS 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,894,844
Number of Sequences: 219361
Number of extensions: 1586534
Number of successful extensions: 3909
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3909
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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