ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd26h14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009620.1| Triticum aestivum clone wre1n.pk0126.e11:fis, ful... 622 e-175
2dbj|AK111569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 9e-27
3gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic seque... 107 3e-20
4gb|AC128646.5| Oryza sativa chromosome 3 BAC OSJNBb0029I19 genom... 107 3e-20
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 107 3e-20
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
7gb|AY112561.1| Zea mays CL39582_1 mRNA sequence 105 1e-19
8dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
9dbj|AK111837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 74 5e-10
11emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 74 5e-10
12gb|AF475127.1| Triticum aestivum 18S subunit ribosomal protein m... 64 5e-07
13gb|AY112520.1| Zea mays CL889_1 mRNA sequence 52 0.002
14gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromo... 42 1.7
15emb|AL590227.13| Human DNA sequence from clone RP11-343D24 on ch... 42 1.7
16gb|AC147332.2| Pan troglodytes BAC clone RP43-6C11 from chromoso... 42 1.7
17dbj|AP002068.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 1.7
18ref|NM_124966.1| Arabidopsis thaliana unknown protein AT5G55840 ... 40 6.6
19gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome... 40 6.6
20gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 6.6
21gb|AC112739.5| Rattus norvegicus 7 BAC CH230-108A12 (Children's ... 40 6.6
22gb|AY809924.1| Schistosoma japonicum SJCHGC02321 protein mRNA, p... 40 6.6
23gb|AC093662.4| Homo sapiens BAC clone RP11-477A19 from 7, comple... 40 6.6
24gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, co... 40 6.6
25ref|XM_810237.1| Trypanosoma cruzi strain CL Brener acyl-CoA deh... 40 6.6
26ref|XM_814523.1| Trypanosoma cruzi strain CL Brener acyl-CoA deh... 40 6.6
27gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, compl... 40 6.6
28gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 6.6
29emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chr... 40 6.6
30emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 6.6
31emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 6.6
32emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 6.6
33gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 6.6
34dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, ... 40 6.6
35gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.6
36gb|AC159216.2| Pan troglodytes BAC clone CH251-477A18 from chrom... 40 6.6
37gb|AC016817.6| Homo sapiens chromosome 10 clone RP11-13G8, compl... 40 6.6
38gb|AC159034.2| Pan troglodytes BAC clone CH251-335D18 from chrom... 40 6.6
39gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, comp... 40 6.6
40gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, comp... 40 6.6
41dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 6.6
42gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from... 40 6.6
43emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, c... 40 6.6
44dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.6
45gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y... 40 6.6
46gb|AC006561.8|AC006561 Homo sapiens 12 PAC RPCI3-474D1 (Roswell ... 40 6.6
47gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complet... 40 6.6
48gb|AC087587.14| Homo sapiens 12 BAC CTC-465D4 (CalTech Human BAC... 40 6.6 
>gb|BT009620.1| Triticum aestivum clone wre1n.pk0126.e11:fis, full insert mRNA
           sequence
          Length = 862

 Score =  622 bits (314), Expect = e-175
 Identities = 431/473 (91%), Gaps = 21/473 (4%)
 Strand = Plus / Minus

                                                                       
Query: 31  gaatacagctnncgacgtgcatgctttccttggtgaaattccaaaaaa------cacttt 84
           ||||||||||  |||| |||| ||||||||||||||||||||||||||      ||||||
Sbjct: 752 gaatacagctttcgacatgcaagctttccttggtgaaattccaaaaaaaaaaaacacttt 693

                                                                       
Query: 85  atgtgtctttgttcttccaggtcaggcagcaaccaatcaccaaaggctggaaataccagt 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 atgtgtctttgttcttccaggtcaggcagcaaccaatcaccaaaggctggaaataccagt 633

                                                                       
Query: 145 acatggtctttccaggtttttatatagaacacaaaacaggtatacatcaggngagaaaca 204
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 632 acatggtctttccaggttcttatatagaacacaaaacaggtatacatcaggtgagaaaca 573

                                                                       
Query: 205 atcattcaatttttcccaggtgtaattccgactacgacgttgctgaccagtttacccttt 264
           | | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 572 acccttcaatttttcccaggtgtaattccaactacgacgttgctgaccagtttacccttt 513

                                                                       
Query: 265 tcgtcgacagtcatagggttctcaacaacaacggttacattctggggctgagatgtggga 324
           ||||| || |||||||||||||||||||| ||||||||||||||||| |||| |||||||
Sbjct: 512 tcgtcaactgtcatagggttctcaacaacgacggttacattctggggttgaggtgtggga 453

                                                                       
Query: 325 acagaagctgatgaagcattatatgcagattcatttgatgtaggccttggacatggtgca 384
           |||||||||||||| |||||||||||||||||||||||||||||      |||||| || 
Sbjct: 452 acagaagctgatgaggcattatatgcagattcatttgatgtagg------acatggcgcg 399

                                                                       
Query: 385 ggtgacatggtgtttattccagtat---------tcgtgataaaatcgcagatggcacat 435
           |||| |||||| |||||||||||||         | |||||| |||||||||||||||||
Sbjct: 398 ggtggcatggtatttattccagtatttgtgatatttgtgatataatcgcagatggcacat 339

                                                                
Query: 436 ttgacagaaggtgctccatgtggatacatcaaagttgtccggcaccgaccaca 488
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttgacagaaggtgctccatgtggatacatcaaagttgtccggcaccgaccaca 286
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>dbj|AK111569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071E13, full
           insert sequence
          Length = 1089

 Score =  129 bits (65), Expect = 9e-27
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                       
Query: 216 tttcccaggtgtaattccgactacgacgttgctgaccagtttacccttttcgtcgacagt 275
           |||||||| ||||| ||| ||||| || ||||| ||||||||||||||||| || |||||
Sbjct: 780 tttcccagttgtaactccaactacaacattgctaaccagtttacccttttcatcaacagt 721

                                                            
Query: 276 catagggttctcaacaacaacggttacattctggggctgagatgtggga 324
           |||||||||||| |||||||||||||||||||||||  |||||||||||
Sbjct: 720 catagggttctcgacaacaacggttacattctggggtcgagatgtggga 672



 Score =  105 bits (53), Expect = 1e-19
 Identities = 119/141 (84%)
 Strand = Plus / Minus

                                                                       
Query: 340 gcattatatgcagattcatttgatgtaggccttggacatggtgcaggtgacatggtgttt 399
           |||||||||| |||| || ||||||||||| ||||| |||| |  |||| ||  || || 
Sbjct: 626 gcattatatgaagatccacttgatgtaggcattggagatggcgtgggtgccacagtattc 567

                                                                       
Query: 400 attccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgctccatgtgga 459
           ||||| || || |||||| ||| ||| ||||||||||||||||||||||| |||| ||||
Sbjct: 566 attccggtgtttgtgatataatggcatatggcacatttgacagaaggtgcgccatatgga 507

                                
Query: 460 tacatcaaagttgtccggcac 480
           ||||||||||| |||||||||
Sbjct: 506 tacatcaaagtcgtccggcac 486
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>gb|AC147427.2| Oryza sativa chromosome 3  B1394A07 genomic sequence, complete sequence
          Length = 175704

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                          
Query: 250    accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 309
              ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 173435 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 173376

                            
Query: 310    ggctgagatgtggg 323
              ||  ||||||||||
Sbjct: 173375 ggtcgagatgtggg 173362



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                          
Query: 412    gtgataaaatcgcagatggcacatttgacagaaggtgctccatgtggatacatcaaagtt 471
              |||||| ||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| 
Sbjct: 173055 gtgatataatggcatatggcacatttgacagaaggtgcgccatatggatacatcaaagtc 172996

                       
Query: 472    gtccggcac 480
              |||||||||
Sbjct: 172995 gtccggcac 172987



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 340    gcattatatgcagattcatttgatgtaggccttggacatgg 380
              |||||||||| |||| || ||||||||||| ||||| ||||
Sbjct: 173229 gcattatatgaagatccacttgatgtaggcattggagatgg 173189
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>gb|AC128646.5| Oryza sativa chromosome 3 BAC OSJNBb0029I19 genomic sequence, complete
             sequence
          Length = 120254

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                         
Query: 250   accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 309
             ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 11532 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 11473

                           
Query: 310   ggctgagatgtggg 323
             ||  ||||||||||
Sbjct: 11472 ggtcgagatgtggg 11459



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                         
Query: 412   gtgataaaatcgcagatggcacatttgacagaaggtgctccatgtggatacatcaaagtt 471
             |||||| ||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| 
Sbjct: 11152 gtgatataatggcatatggcacatttgacagaaggtgcgccatatggatacatcaaagtc 11093

                      
Query: 472   gtccggcac 480
             |||||||||
Sbjct: 11092 gtccggcac 11084



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 340   gcattatatgcagattcatttgatgtaggccttggacatgg 380
             |||||||||| |||| || ||||||||||| ||||| ||||
Sbjct: 11326 gcattatatgaagatccacttgatgtaggcattggagatgg 11286
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                            
Query: 250      accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 309
                ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 24462425 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 24462484

                              
Query: 310      ggctgagatgtggg 323
                ||  ||||||||||
Sbjct: 24462485 ggtcgagatgtggg 24462498



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                            
Query: 412      gtgataaaatcgcagatggcacatttgacagaaggtgctccatgtggatacatcaaagtt 471
                |||||| ||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| 
Sbjct: 24462805 gtgatataatggcatatggcacatttgacagaaggtgcgccatatggatacatcaaagtc 24462864

                         
Query: 472      gtccggcac 480
                |||||||||
Sbjct: 24462865 gtccggcac 24462873



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 340      gcattatatgcagattcatttgatgtaggccttggacatgg 380
                |||||||||| |||| || ||||||||||| ||||| ||||
Sbjct: 24462631 gcattatatgaagatccacttgatgtaggcattggagatgg 24462671
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  107 bits (54), Expect = 3e-20
 Identities = 69/74 (93%)
 Strand = Plus / Plus

                                                                            
Query: 250      accagtttacccttttcgtcgacagtcatagggttctcaacaacaacggttacattctgg 309
                ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 24379894 accagtttacccttttcatcaacagtcatagggttctcgacaacaacggttacattctgg 24379953

                              
Query: 310      ggctgagatgtggg 323
                ||  ||||||||||
Sbjct: 24379954 ggtcgagatgtggg 24379967



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                            
Query: 412      gtgataaaatcgcagatggcacatttgacagaaggtgctccatgtggatacatcaaagtt 471
                |||||| ||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| 
Sbjct: 24380274 gtgatataatggcatatggcacatttgacagaaggtgcgccatatggatacatcaaagtc 24380333

                         
Query: 472      gtccggcac 480
                |||||||||
Sbjct: 24380334 gtccggcac 24380342



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 340      gcattatatgcagattcatttgatgtaggccttggacatgg 380
                |||||||||| |||| || ||||||||||| ||||| ||||
Sbjct: 24380100 gcattatatgaagatccacttgatgtaggcattggagatgg 24380140
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>gb|AY112561.1| Zea mays CL39582_1 mRNA sequence
          Length = 749

 Score =  105 bits (53), Expect = 1e-19
 Identities = 212/265 (80%)
 Strand = Plus / Plus

                                                                       
Query: 216 tttcccaggtgtaattccgactacgacgttgctgaccagtttacccttttcgtcgacagt 275
           |||||||| ||| | ||| ||||| ||| ||||||| ||||| ||||| || || || ||
Sbjct: 316 tttcccagctgtgactccaactacaacgctgctgacaagttttcccttgtcatcaactgt 375

                                                                       
Query: 276 catagggttctcaacaacaacggttacattctggggctgagatgtgggaacagaagctga 335
           ||||||||||||||||||||| ||||||||||| |  |||||| | ||| ||||||  ||
Sbjct: 376 catagggttctcaacaacaacagttacattctgagattgagatttaggagcagaagtaga 435

                                                                       
Query: 336 tgaagcattatatgcagattcatttgatgtaggccttggacatggtgcaggtgacatggt 395
           |||  || |||||| |||  ||| |||||| ||||| | | |||| |  |||| ||  ||
Sbjct: 436 tgagccactatatgaagacccatctgatgttggcctcgcagatggggtgggtgccacagt 495

                                                                       
Query: 396 gtttattccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgctccatg 455
            |||| |||||||   |||| | ||| ||| | ||||||||| || |||||||| || | 
Sbjct: 496 atttactccagtagctgtgacataattgcatacggcacattttactgaaggtgcgccgta 555

                                    
Query: 456 tggatacatcaaagttgtccggcac 480
           |||||||||||||||||||||||||
Sbjct: 556 tggatacatcaaagttgtccggcac 580
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 403      ccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgctccatgtggatac 462
                |||||||| || ||||||| |||||| ||||| ||||||||||||||||| | |||||||
Sbjct: 25849757 ccagtatttgtaataaaattgcagatagcacacttgacagaaggtgctccgtatggatac 25849816

                     
Query: 463      atcaa 467
                |||||
Sbjct: 25849817 atcaa 25849821
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>dbj|AK111837.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139G05, full
           insert sequence
          Length = 1182

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                       
Query: 403 ccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgctccatgtggatac 462
           |||||||| || ||||||| |||||| ||||| ||||||||||||||||| | |||||||
Sbjct: 553 ccagtatttgtaataaaattgcagatagcacacttgacagaaggtgctccgtatggatac 494

                
Query: 463 atcaa 467
           |||||
Sbjct: 493 atcaa 489



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 235 actacgacgttgctgaccagtttacccttttcgtcgacagtcatagggttctcaacaaca 294
           ||||| |||||||| ||||  || |||||| | || || |||||||| || |||||||||
Sbjct: 706 actacaacgttgctcaccaactttccctttgcatctaccgtcataggattttcaacaaca 647

                         
Query: 295 acggttacattctg 308
           || || ||||||||
Sbjct: 646 acagtaacattctg 633
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 403      ccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgctccatgtggatac 462
                |||||||| || ||||||| |||||| ||||| ||||||||||||||||| | |||||||
Sbjct: 25777933 ccagtatttgtaataaaattgcagatagcacacttgacagaaggtgctccgtatggatac 25777992

                     
Query: 463      atcaa 467
                |||||
Sbjct: 25777993 atcaa 25777997
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137492

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 403   ccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgctccatgtggatac 462
             |||||||| || ||||||| |||||| ||||| ||||||||||||||||| | |||||||
Sbjct: 71208 ccagtatttgtaataaaattgcagatagcacacttgacagaaggtgctccgtatggatac 71267

                  
Query: 463   atcaa 467
             |||||
Sbjct: 71268 atcaa 71272
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>gb|AF475127.1| Triticum aestivum 18S subunit ribosomal protein mRNA, partial cds
          Length = 465

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 393 ggtgtttattccagtattcgtgataaaatcgcagatggcacatttgacagaaggtgctcc 452
           |||||| |||||| | || || ||||||| |||||| ||||||||||| |||| ||||||
Sbjct: 279 ggtgttcattccaatgtttgtaataaaattgcagatagcacatttgaccgaagatgctcc 220

                       
Query: 453 atgtggatacat 464
           || |||||||||
Sbjct: 219 atatggatacat 208



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 232 ccgactacgacgttgctgaccagtttacccttttcgtcgacagtcatagggttctcaaca 291
           ||||||||||||||||| |||| ||| ||||| || || || ||||| ||||| || || 
Sbjct: 440 ccgactacgacgttgctcaccaatttccccttgtcatctactgtcattgggttttcgacg 381

                            
Query: 292 acaacggttacattctg 308
           || || |||||||||||
Sbjct: 380 accaccgttacattctg 364
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>gb|AY112520.1| Zea mays CL889_1 mRNA sequence
          Length = 1158

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 430 gcacatttgacagaaggtgctccatgtggatacatcaa 467
           |||||||||||||| |||||||| | ||||||||||||
Sbjct: 444 gcacatttgacagacggtgctccgtatggatacatcaa 407
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>gb|AC183962.3| Pan troglodytes BAC clone CH251-711F5 from chromosome 6, complete
              sequence
          Length = 196547

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    gtttttatatagaacacaaaa 180
              |||||||||||||||||||||
Sbjct: 148335 gtttttatatagaacacaaaa 148315
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>emb|AL590227.13| Human DNA sequence from clone RP11-343D24 on chromosome 6 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene
             and a novel gene, complete sequence
          Length = 138027

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   gtttttatatagaacacaaaa 180
             |||||||||||||||||||||
Sbjct: 52250 gtttttatatagaacacaaaa 52230
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>gb|AC147332.2| Pan troglodytes BAC clone RP43-6C11 from chromosome 7, complete
             sequence
          Length = 23935

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   caatttttcccaggtgtaatt 231
             |||||||||||||||||||||
Sbjct: 19530 caatttttcccaggtgtaatt 19510
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>dbj|AP002068.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T8O3
          Length = 54386

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 60   ttggtgaaattccaaaaaaca 80
            |||||||||||||||||||||
Sbjct: 3242 ttggtgaaattccaaaaaaca 3222
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>ref|NM_124966.1| Arabidopsis thaliana unknown protein AT5G55840 mRNA, complete cds
          Length = 3825

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cacaaaacaggtatacatca 193
            ||||||||||||||||||||
Sbjct: 2073 cacaaaacaggtatacatca 2054
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>gb|AC159273.4| Mus musculus BAC clone RP23-391G8 from chromosome 7, complete sequence
          Length = 227709

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   acatggtgcaggtgacatgg 394
             ||||||||||||||||||||
Sbjct: 54918 acatggtgcaggtgacatgg 54937
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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 329     aagctgatgaagcattatat 348
               ||||||||||||||||||||
Sbjct: 2375354 aagctgatgaagcattatat 2375335
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>gb|AC112739.5| Rattus norvegicus 7 BAC CH230-108A12 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 234420

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    gatgtgggaacagaagctga 335
              ||||||||||||||||||||
Sbjct: 111220 gatgtgggaacagaagctga 111239
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>gb|AY809924.1| Schistosoma japonicum SJCHGC02321 protein mRNA, partial cds
          Length = 1298

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   gaaattccaaaaaacacttt 84
            ||||||||||||||||||||
Sbjct: 1100 gaaattccaaaaaacacttt 1081
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>gb|AC093662.4| Homo sapiens BAC clone RP11-477A19 from 7, complete sequence
          Length = 48279

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   tttttatatagaacacaaaa 180
             ||||||||||||||||||||
Sbjct: 42002 tttttatatagaacacaaaa 42021
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>gb|AC147133.2| Pan troglodytes BAC clone CH251-372A19 from Y, complete sequence
          Length = 192074

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    ggctgagatgtgggaacaga 329
              ||||||||||||||||||||
Sbjct: 166669 ggctgagatgtgggaacaga 166650
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>ref|XM_810237.1| Trypanosoma cruzi strain CL Brener acyl-CoA dehydrogenase
           (Tc00.1047053509153.120) partial mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 tttttcccaggtgtaattcc 233
           ||||||||||||||||||||
Sbjct: 653 tttttcccaggtgtaattcc 634
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>ref|XM_814523.1| Trypanosoma cruzi strain CL Brener acyl-CoA dehydrogenase
           (Tc00.1047053510303.290) partial mRNA
          Length = 1206

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 tttttcccaggtgtaattcc 233
           ||||||||||||||||||||
Sbjct: 653 tttttcccaggtgtaattcc 634
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>gb|AC044798.7| Homo sapiens chromosome 16 clone RP11-22D3, complete sequence
          Length = 165651

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   tgagatgtgggaacagaagc 332
             ||||||||||||||||||||
Sbjct: 47008 tgagatgtgggaacagaagc 47027
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 420     atcgcagatggcacatttga 439
               ||||||||||||||||||||
Sbjct: 2589014 atcgcagatggcacatttga 2588995
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>emb|AL512307.12| Human DNA sequence from clone RP11-285B6 on chromosome 1 Contains part of
              the RGS7 gene for regulator of G-protein signalling 7,
              complete sequence
          Length = 182323

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tttatgtgtctttgttcttc 101
              ||||||||||||||||||||
Sbjct: 150383 tttatgtgtctttgttcttc 150402
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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 329     aagctgatgaagcattatat 348
               ||||||||||||||||||||
Sbjct: 2318924 aagctgatgaagcattatat 2318905
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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 329     aagctgatgaagcattatat 348
               ||||||||||||||||||||
Sbjct: 2345300 aagctgatgaagcattatat 2345281
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>emb|BX927156.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 9/10
          Length = 349115

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 382    gcaggtgacatggtgtttat 401
              ||||||||||||||||||||
Sbjct: 310862 gcaggtgacatggtgtttat 310881
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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     gctgagatgtgggaacagaa 330
               ||||||||||||||||||||
Sbjct: 1439210 gctgagatgtgggaacagaa 1439191
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>dbj|BS000642.2| Pan troglodytes chromosome Y clone: PTB-307G08, complete sequence
          Length = 162472

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ggctgagatgtgggaacaga 329
             ||||||||||||||||||||
Sbjct: 36056 ggctgagatgtgggaacaga 36037
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 310      ggctgagatgtgggaacaga 329
                ||||||||||||||||||||
Sbjct: 18871350 ggctgagatgtgggaacaga 18871369
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>gb|AC159216.2| Pan troglodytes BAC clone CH251-477A18 from chromosome unknown, complete
              sequence
          Length = 206361

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 330    agctgatgaagcattatatgcaga 353
              |||||||||||||||| |||||||
Sbjct: 189599 agctgatgaagcattaaatgcaga 189622
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>gb|AC016817.6| Homo sapiens chromosome 10 clone RP11-13G8, complete sequence
          Length = 159981

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 330   agctgatgaagcattatatgcaga 353
             |||||||||||||||| |||||||
Sbjct: 61304 agctgatgaagcattaaatgcaga 61281
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>gb|AC159034.2| Pan troglodytes BAC clone CH251-335D18 from chromosome unknown, complete
              sequence
          Length = 170276

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 330    agctgatgaagcattatatgcaga 353
              |||||||||||||||| |||||||
Sbjct: 110069 agctgatgaagcattaaatgcaga 110046
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>gb|AC093469.11| Mus musculus chromosome 7, clone RP23-21I4, complete sequence
          Length = 215022

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    acatggtgcaggtgacatgg 394
              ||||||||||||||||||||
Sbjct: 211820 acatggtgcaggtgacatgg 211839
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>gb|AC007614.7| Homo sapiens chromosome 16 clone RP11-491F9, complete sequence
          Length = 192347

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    tgagatgtgggaacagaagc 332
              ||||||||||||||||||||
Sbjct: 187937 tgagatgtgggaacagaagc 187956
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 382     gcaggtgacatggtgtttat 401
               ||||||||||||||||||||
Sbjct: 3131142 gcaggtgacatggtgtttat 3131161
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>gb|AC146450.5| Pan troglodytes BAC clone clone CH251-552K12 from y, complete sequence
          Length = 172072

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ggctgagatgtgggaacaga 329
             ||||||||||||||||||||
Sbjct: 82150 ggctgagatgtgggaacaga 82131
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>emb|BX000984.7| Zebrafish DNA sequence from clone CH211-157C7, complete sequence
          Length = 160029

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    tttttatatagaacacaaaa 180
              ||||||||||||||||||||
Sbjct: 110802 tttttatatagaacacaaaa 110821
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>dbj|AB018120.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWJ3
          Length = 42356

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 174  cacaaaacaggtatacatca 193
            ||||||||||||||||||||
Sbjct: 5353 cacaaaacaggtatacatca 5334
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>gb|AC006371.2|AC006371 Homo sapiens BAC clone RP11-304C24 from Y, complete sequence
          Length = 202354

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   ggctgagatgtgggaacaga 329
             ||||||||||||||||||||
Sbjct: 60083 ggctgagatgtgggaacaga 60102
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>gb|AC006561.8|AC006561 Homo sapiens 12 PAC RPCI3-474D1 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 60801

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 163   tttatatagaacacaaaacaggta 186
             |||||||| |||||||||||||||
Sbjct: 29208 tttatatataacacaaaacaggta 29231
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>gb|AY449458.1| Oikopleura dioica clone BACOIKO002 4xj18, complete sequence
          Length = 188193

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 244    ttgctgaccagtttacccttttcgtcga 271
              ||||||||||||||||| ||||| ||||
Sbjct: 175814 ttgctgaccagtttaccgttttcctcga 175787
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>gb|AC087587.14| Homo sapiens 12 BAC CTC-465D4 (CalTech Human BAC Library C) complete
              sequence
          Length = 198842

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 336    tgaagcattatatgcagattcatt 359
              ||||||| ||||||||||||||||
Sbjct: 147126 tgaagcaatatatgcagattcatt 147103


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,768,673
Number of Sequences: 3902068
Number of extensions: 4768673
Number of successful extensions: 102188
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101770
Number of HSP's gapped (non-prelim): 417
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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